Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009720

Physical Location & Seq

Genomic Coordinates Forward (+)

16492144 .. 16497212

Gene Structure 5069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1148400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGAAGAATAATTTGCAAGCCAAGTATGAGGTGGAAACTCTGGAAGCTGAGATTAGGATGTTCAGGAAGAAACTGACTTTTAAAACAGCTCCAATGCCAATCTTCTATCAGGAGCCTCCACCTCCTAAAGCAGACCTGAAGAAGATACCAACAAGAGCCAGTCTTCCAACATTGGATGTAGGAAGAGCTTACTTCCTGCAGTTTCTGAAGCAAACGGTAATGCCAATGGTCGATCTAGGAGATTTAGTCTGGATGAGAAAGTACCTCAGAACACTGCTAGAGGGTCATCTTATGTGTATCCAAAGAAGCCACAACGAAGTCCCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

111

Amino Acids

12.91

Weight (kDa)

9.48

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	2 - 45	3.3e-08	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009720)

Species	Orthologous Gene IDs
malus_domestica	MD03G1148400.v1.1 MD05G1175700.v1.1 MD10G1012100.v1.1
pyrus_communis	pycom03g10260 pycom05g16230
rosa_chinensis	RchiOBHm_Chr1g0330921 RchiOBHm_Chr1g0356631 RchiOBHm_Chr5g0083671
rosa_laevigata	RLG00000008846
rosa_multiflora	Rmu_sc0000650.1_g000020
rosa_roxburghii	Rroxscaffold_2G00114950 Rroxscaffold_2G00138200 Rroxscaffold_3G00218770 Rroxscaffold_3G00224400 Rroxscaffold_3G00276410 Rroxscaffold_4G00325870 Rroxscaffold_7G00196860
rosa_samantha	Rh1CG247500 Rh2DG367700 Rh3CG314600 Rh7BG472300 Rh7DG486100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	161, 230
AfaI	GTAC	1 cut(s)	266
AluBI	AGCT	3 cut(s)	50, 92, 191
AluI	AGCT	3 cut(s)	50, 92, 191
AlwNI	CAGNNNCTG	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	158
BciVI	GTATCC	1 cut(s)	311
BfaI	CTAG	3 cut(s)	239, 281, 331
BfmI	CTRYAG	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bse1I	ACTGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	66, 184, 261
BseMII	CTCAG	2 cut(s)	42, 283
BseNI	ACTGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	308
BsmFI	GGGAC	1 cut(s)	308
Bsp143I	GATC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	43, 282
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	204
BspQI	GCTCTTC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	51, 269
BstF5I	GGATG	3 cut(s)	66, 184, 261
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	200
BstV2I	GAAGAC	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	311
BtsCI	GGATG	3 cut(s)	66, 184, 261
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	1 cut(s)	21
CaiI	CAGNNNCTG	1 cut(s)	208
Csp6I	GTAC	1 cut(s)	265
CviJI	RGCY	7 cut(s)	23, 50, 92, 118, 161, 191, 312
CviKI_1	RGCY	7 cut(s)	23, 50, 92, 118, 161, 191, 312
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	51, 269
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
DraI	TTTAAA	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco57I	CTGAAG	2 cut(s)	161, 230
FaiI	YATR	2 cut(s)	30, 296
FaqI	GGGAC	1 cut(s)	308
FokI	GGATG	3 cut(s)	73, 191, 268
FspBI	CTAG	3 cut(s)	239, 281, 331
Hpy188I	TCNGA	2 cut(s)	210, 272
Hpy188III	TCNNGA	4 cut(s)	44, 67, 113, 253
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	19, 202
HpyF3I	CTNAG	2 cut(s)	51, 269
Kzo9I	GATC	1 cut(s)	235
LguI	GCTCTTC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	97, 115
LpnPI	CCDG	7 cut(s)	29, 52, 98, 152, 175, 212, 238
MaeI	CTAG	3 cut(s)	239, 281, 331
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	7 cut(s)	19, 82, 97, 154, 157, 158, 198
MluCI	AATT	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	5 cut(s)	25, 129, 135, 277, 278
MseI	TTAA	1 cut(s)	84
NdeII	GATC	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	117
PstI	CTGCAG	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	235
SetI	ASST	7 cut(s)	36, 52, 94, 127, 141, 193, 270
SfcI	CTRYAG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	13
SspMI	CTAG	3 cut(s)	239, 281, 331
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	234
TasI	AATT	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	282
TspRI	CASTG	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
XspI	CTAG	3 cut(s)	239, 281, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.