Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009720

Physical Location & Seq

Genomic Coordinates Forward (+)

57851839 .. 57863189

Gene Structure 11351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00325870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCGGTCGGACCGCGATCAATGCGGTCAACCACCTCCGATGCAAAAGTCATCAACTACAAACTTGTTCAAAATGAAAGGGTAACATCACGCCTTCAATCACACACTTTCAACATCCAACGGGACCTCACTTCCACAAAACAATTCTCAACAACTCAACGAGTTAAATCCGGAGGCAGCAACATCAGTGCTATGTCCCAACCGGATCCTACCTCTTCGACCCTCGCCACCTCGCTTGGTGCCCCTTCTCCCCATGCCCGTAACCCCCACGTCTACGGCCTCTACAACTTTACCTCCGTTACGATCGAGCCCCACATCGGAGACACTCTCTTCGACACGAGGTTCTTCCCGATCGATCGCCCTACACCGTCGTCGGCGGTGTTCCGGTTTGACTTCACCACCGCCTCCCGGGAGTACGCACTCGATGCTAACCCCGCACGGGAGCTTCGCATGTGTGAAGGTTCCGGATTTCGACCAAATCATCGTCGCCGGAGGAGGTTCCTACCACATCATGTTCGGCGCCGCCGGGAGCAAGATAACCTCGGTGGAGAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like Kelch_1

Protein Analysis

185

Amino Acids

20.94

Weight (kDa)

10.94

Isoelectric Point (pI)

70.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009720)

Species	Orthologous Gene IDs
malus_domestica	MD03G1148400.v1.1 MD05G1175700.v1.1 MD10G1012100.v1.1
pyrus_communis	pycom03g10260 pycom05g16230
rosa_chinensis	RchiOBHm_Chr1g0330921 RchiOBHm_Chr1g0356631 RchiOBHm_Chr5g0083671
rosa_laevigata	RLG00000008846
rosa_multiflora	Rmu_sc0000650.1_g000020
rosa_roxburghii	Rroxscaffold_2G00114950 Rroxscaffold_2G00138200 Rroxscaffold_3G00218770 Rroxscaffold_3G00224400 Rroxscaffold_3G00276410 Rroxscaffold_4G00325870 Rroxscaffold_7G00196860
rosa_samantha	Rh1CG247500 Rh2DG367700 Rh3CG314600 Rh7BG472300 Rh7DG486100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	239, 519
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	16
AccIII	TCCGGA	2 cut(s)	170, 464
AciI	CCGC	7 cut(s)	5, 14, 25, 377, 402, 435, 523
AclWI	GGATC	2 cut(s)	200, 213
AcyI	GRCGYC	1 cut(s)	520
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	3 cut(s)	317, 408, 439
AgsI	TTSAA	3 cut(s)	71, 98, 112
AjiI	CACGTC	1 cut(s)	271
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	200, 213
Ama87I	CYCGRG	1 cut(s)	408
Aor13HI	TCCGGA	2 cut(s)	170, 464
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	177
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	2 cut(s)	11, 124
AsuC2I	CCSGG	3 cut(s)	409, 410, 527
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	408
AvaII	GGWCC	2 cut(s)	11, 124
BaeGI	GKGCMC	1 cut(s)	244
BamHI	GGATCC	1 cut(s)	205
BanI	GGYRCC	2 cut(s)	239, 519
BanII	GRGCYC	1 cut(s)	312
BauI	CACGAG	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	292
BcnI	CCSGG	3 cut(s)	409, 410, 527
BcoDI	GTCTC	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	523
BisI	GCNGC	2 cut(s)	178, 523
BlsI	GCNGC	2 cut(s)	179, 524
Bme1390I	CCNGG	3 cut(s)	409, 410, 527
Bme18I	GGWCC	2 cut(s)	11, 124
BmeT110I	CYCGRG	1 cut(s)	408
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	11, 124
BmiI	GGNNCC	6 cut(s)	125, 207, 241, 463, 500, 521
BmrFI	CCNGG	3 cut(s)	409, 410, 527
BmsI	GCATC	2 cut(s)	31, 415
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpuMI	CCSGG	3 cut(s)	409, 410, 527
Bsa29I	ATCGAT	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	408, 541
BsaWI	WCCGGW	4 cut(s)	170, 202, 384, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 408, 439
BseAI	TCCGGA	2 cut(s)	170, 464
BseCI	ATCGAT	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	408, 541
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	317, 408, 439
BseRI	GAGGAG	1 cut(s)	508
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	4 cut(s)	9, 306, 354, 358
BshFI	GGCC	1 cut(s)	279
BshNI	GGYRCC	2 cut(s)	239, 519
BshVI	ATCGAT	1 cut(s)	354
BsiEI	CGRYCG	4 cut(s)	9, 306, 354, 358
BsiHKCI	CYCGRG	1 cut(s)	408
BsiSI	CCGG	7 cut(s)	171, 203, 385, 409, 465, 490, 526
BslFI	GGGAC	2 cut(s)	137, 181
BslI	CCNNNNNNNGG	3 cut(s)	317, 408, 439
BsmAI	GTCTC	1 cut(s)	315
BsmFI	GGGAC	2 cut(s)	137, 181
BsnI	GGCC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	408
Bsp1286I	GDGCHC	2 cut(s)	244, 312
Bsp13I	TCCGGA	2 cut(s)	170, 464
Bsp143I	GATC	5 cut(s)	17, 205, 303, 351, 355
BspACI	CCGC	7 cut(s)	5, 14, 25, 377, 402, 435, 523
BspANI	GGCC	1 cut(s)	279
BspDI	ATCGAT	1 cut(s)	354
BspEI	TCCGGA	2 cut(s)	170, 464
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	6 cut(s)	125, 207, 241, 463, 500, 521
BspPI	GGATC	2 cut(s)	200, 213
BspT107I	GGYRCC	2 cut(s)	239, 519
BssECI	CCNNGG	2 cut(s)	408, 541
BssMI	GATC	5 cut(s)	17, 205, 303, 351, 355
BssNI	GRCGYC	1 cut(s)	520
BssSI	CACGAG	1 cut(s)	337
Bst2BI	CACGAG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	369
Bst6I	CTCTTC	2 cut(s)	220, 335
BstACI	GRCGYC	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	523
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	5 cut(s)	20, 208, 306, 354, 358
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	5 cut(s)	17, 205, 303, 351, 355
BstMCI	CGRYCG	4 cut(s)	9, 306, 354, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 425, 434
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	3 cut(s)	407, 408, 525
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	354
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	114
BtsIMutI	CAGTG	1 cut(s)	193
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	2 cut(s)	11, 124
Cfr9I	CCCGGG	1 cut(s)	408
ClaI	ATCGAT	1 cut(s)	354
CpoI	CGGWCCG	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	415
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CspI	CGGWCCG	1 cut(s)	11
CviAII	CATG	3 cut(s)	254, 451, 512
CviJI	RGCY	3 cut(s)	279, 310, 445
CviKI_1	RGCY	3 cut(s)	279, 310, 445
CviQI	GTAC	1 cut(s)	415
DinI	GGCGCC	1 cut(s)	521
DpnI	GATC	5 cut(s)	19, 207, 305, 353, 357
DpnII	GATC	5 cut(s)	17, 205, 303, 351, 355
Eam1104I	CTCTTC	2 cut(s)	220, 335
EarI	CTCTTC	2 cut(s)	220, 335
Eco24I	GRGCYC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	11, 124
Eco88I	CYCGRG	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	312
EgeI	GGCGCC	1 cut(s)	521
EheI	GGCGCC	1 cut(s)	521
FaeI	CATG	3 cut(s)	257, 454, 515
FaiI	YATR	4 cut(s)	194, 255, 452, 513
FaqI	GGGAC	2 cut(s)	137, 181
FatI	CATG	3 cut(s)	253, 450, 511
FauI	CCCGC	1 cut(s)	442
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	178, 523
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	178, 523
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	2 cut(s)	178, 523
HaeII	RGCGCY	1 cut(s)	523
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	7 cut(s)	171, 203, 385, 409, 465, 490, 526
HhaI	GCGC	1 cut(s)	522
Hin1I	GRCGYC	1 cut(s)	520
Hin1II	CATG	3 cut(s)	257, 454, 515
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HpaII	CCGG	7 cut(s)	171, 203, 385, 409, 465, 490, 526
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	2 cut(s)	30, 274
Hpy188I	TCNGA	3 cut(s)	11, 40, 320
Hpy188III	TCNNGA	3 cut(s)	171, 349, 465
Hpy8I	GTNNAC	2 cut(s)	30, 274
Hpy99I	CGWCG	3 cut(s)	373, 376, 489
HpyAV	CCTTC	3 cut(s)	104, 255, 452
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	44
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 425, 434
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	1 cut(s)	520
Hsp92II	CATG	3 cut(s)	257, 454, 515
HspAI	GCGC	1 cut(s)	520
KasI	GGCGCC	1 cut(s)	519
Kpn2I	TCCGGA	2 cut(s)	170, 464
Kzo9I	GATC	5 cut(s)	17, 205, 303, 351, 355
LmnI	GCTCC	2 cut(s)	442, 529
LpnPI	CCDG	7 cut(s)	184, 216, 398, 422, 478, 503, 539
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	2 cut(s)	31, 415
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	82, 260, 298
MalI	GATC	5 cut(s)	19, 207, 305, 353, 357
MboI	GATC	5 cut(s)	17, 205, 303, 351, 355
MboII	GAAGA	3 cut(s)	207, 322, 337
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	2 cut(s)	244, 312
MluCI	AATT	1 cut(s)	143
Mly113I	GGCGCC	1 cut(s)	520
MmeI	TCCRAC	1 cut(s)	142
MroI	TCCGGA	2 cut(s)	170, 464
MseI	TTAA	1 cut(s)	165
MspI	CCGG	7 cut(s)	171, 203, 385, 409, 465, 490, 526
MspR9I	CCNGG	3 cut(s)	409, 410, 527
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	22, 425, 434
NarI	GGCGCC	1 cut(s)	520
NciI	CCSGG	3 cut(s)	409, 410, 527
NdeII	GATC	5 cut(s)	17, 205, 303, 351, 355
NlaIII	CATG	3 cut(s)	257, 454, 515
NlaIV	GGNNCC	6 cut(s)	125, 207, 241, 463, 500, 521
NspI	RCATGY	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	179, 524
Ple19I	CGATCG	3 cut(s)	306, 354, 358
PluTI	GGCGCC	1 cut(s)	523
PpuMI	RGGWCCY	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	124
PspN4I	GGNNCC	6 cut(s)	125, 207, 241, 463, 500, 521
PspPI	GGNCC	2 cut(s)	11, 124
PspPPI	RGGWCCY	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	205
PvuI	CGATCG	3 cut(s)	306, 354, 358
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
Rsr2I	CGGWCCG	1 cut(s)	11
RsrII	CGGWCCG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	178, 523
Sau3AI	GATC	5 cut(s)	17, 205, 303, 351, 355
Sau96I	GGNCC	2 cut(s)	11, 124
ScrFI	CCNGG	3 cut(s)	409, 410, 527
SduI	GDGCHC	2 cut(s)	244, 312
SfaNI	GCATC	2 cut(s)	31, 415
SfoI	GGCGCC	1 cut(s)	521
SinI	GGWCC	2 cut(s)	11, 124
SmaI	CCCGGG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	7 cut(s)	5, 14, 25, 377, 402, 435, 523
SspDI	GGCGCC	1 cut(s)	519
StyD4I	CCNGG	3 cut(s)	407, 408, 525
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	6 cut(s)	218, 306, 333, 354, 423, 472
TasI	AATT	1 cut(s)	143
TauI	GCSGC	1 cut(s)	525
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	286
TspMI	CCCGGG	1 cut(s)	408
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	2 cut(s)	11, 124
XceI	RCATGY	1 cut(s)	454
XmaI	CCCGGG	1 cut(s)	408
XmiI	GTMKAC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.