Rroxscaffold_7G00196860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009720
Physical Location & Seq
Reverse (-)
40276089 .. 40291476
15388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196860.1

Sequence Viewer

Length: 459 bp
ATGAATCACCAAAAACTTCCACTAAAATTTTCCAAGATAACATCACACTTTCAATCGAGCACTTTCAACATCCAAAAAGGACTCACTTCCACCCACCAAACAATCCTTGTCGAGCTAAATCCAGAGATGCGTCAAGGGGGTGGAGACGAGCTTGGGGATAGCCGGATTTCGTCGTGGGTCGGCCGGAAGAGGAAGAAATCGAAGGAGAACCAACTCGGGCCGAAGAGGAAGGAGTCGGGGGAGGAGAGAGGGAGAGTTACCATGGGTTTCCGAAAATGGAAGCCTACAGTGCGTGGTGAGGATGGAGCCTCTGAATCGTGCAAGTCCATACACAACATCCGGGATGCTTCTCATGTCGTTCGCGCCATCAACCTTCACGACCCGCCGACATTGTCGTTGTCCGTGAAACCGGAATTACCAAGAATCGGCGTTCATGGCCGACAAAGATCTTCCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.06

Weight (kDa)

10.5

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 363
AciI CCGC 1 cut(s) 383
AcoI YGGCCR 2 cut(s) 181, 436
AcsI RAATTY 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 2 cut(s) 53, 67
AluBI AGCT 3 cut(s) 115, 151, 456
AluI AGCT 3 cut(s) 115, 151, 456
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 3 cut(s) 181, 218, 436
ApoI RAATTY 1 cut(s) 26
AspLEI GCGC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 341
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 2 cut(s) 296, 374
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 285
BglII AGATCT 1 cut(s) 446
Bme1390I CCNGG 1 cut(s) 341
BmeT110I CYCGRG 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 2 cut(s) 117, 334
BpuMI CCSGG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 409
Bsc4I CCNNNNNNNGG 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 4 cut(s) 69, 307, 336, 349
BseLI CCNNNNNNNGG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 257
BseX3I CGGCCG 1 cut(s) 181
Bsh1236I CGCG 1 cut(s) 363
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 3 cut(s) 183, 220, 438
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 4 cut(s) 163, 184, 340, 410
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 3 cut(s) 183, 220, 438
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 446
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 1 cut(s) 383
BspANI GGCC 3 cut(s) 183, 220, 438
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 2 cut(s) 182, 218
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 4 cut(s) 69, 307, 336, 349
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 1 cut(s) 449
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 446
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 289, 435
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 285
BstUI CGCG 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 3 cut(s) 183, 220, 438
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 4 cut(s) 69, 307, 336, 349
BtsIMutI CAGTG 1 cut(s) 294
CfoI GCGC 1 cut(s) 365
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 119
CviAII CATG 3 cut(s) 262, 353, 434
CviJI RGCY 9 cut(s) 115, 151, 162, 183, 220, 283, 308, 438, 456
CviKI_1 RGCY 9 cut(s) 115, 151, 162, 183, 220, 283, 308, 438, 456
DpnI GATC 1 cut(s) 448
DpnII GATC 1 cut(s) 446
EaeI YGGCCR 2 cut(s) 181, 436
EagI CGGCCG 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 182, 218
EarI CTCTTC 2 cut(s) 182, 218
EclXI CGGCCG 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 261
Eco52I CGGCCG 1 cut(s) 181
Eco88I CYCGRG 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 3 cut(s) 265, 356, 437
FaiI YATR 4 cut(s) 263, 329, 354, 435
FatI CATG 3 cut(s) 261, 352, 433
FauI CCCGC 1 cut(s) 390
FokI GGATG 4 cut(s) 56, 314, 323, 356
GlaI GCGC 1 cut(s) 364
HaeIII GGCC 3 cut(s) 183, 220, 438
HapII CCGG 4 cut(s) 163, 184, 340, 410
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 365
Hin1II CATG 3 cut(s) 265, 356, 437
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HinfI GANTC 5 cut(s) 4, 81, 233, 314, 423
HpaII CCGG 4 cut(s) 163, 184, 340, 410
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 2 cut(s) 272, 313
Hpy188III TCNNGA 2 cut(s) 122, 377
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 196, 223, 383
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 289, 435
Hsp92II CATG 3 cut(s) 265, 356, 437
HspAI GCGC 1 cut(s) 363
Kzo9I GATC 1 cut(s) 446
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 5 cut(s) 135, 176, 197, 353, 423
LweI GCATC 2 cut(s) 117, 334
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 448
MboI GATC 1 cut(s) 446
MboII GAAGA 4 cut(s) 199, 205, 235, 441
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 2 cut(s) 26, 413
MlyI GAGTC 2 cut(s) 75, 242
MnlI CCTC 6 cut(s) 183, 219, 235, 242, 292, 319
MspI CCGG 4 cut(s) 163, 184, 340, 410
MspR9I CCNGG 1 cut(s) 341
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 289, 435
NciI CCSGG 1 cut(s) 341
NcoI CCATGG 1 cut(s) 261
NdeII GATC 1 cut(s) 446
NlaIII CATG 3 cut(s) 265, 356, 437
NlaIV GGNNCC 1 cut(s) 307
PfeI GAWTC 3 cut(s) 4, 314, 423
PflFI GACNNNGTC 1 cut(s) 391
PfoI TCCNGGA 1 cut(s) 339
PleI GAGTC 2 cut(s) 75, 241
PpsI GAGTC 2 cut(s) 75, 241
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 1 cut(s) 218
PsuI RGATCY 1 cut(s) 446
PsyI GACNNNGTC 1 cut(s) 391
Sau3AI GATC 1 cut(s) 446
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 75, 242
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 62
SetI ASST 4 cut(s) 117, 153, 375, 458
SfaNI GCATC 2 cut(s) 117, 334
SfcI CTRYAG 1 cut(s) 285
Sse9I AATT 2 cut(s) 26, 413
SsiI CCGC 1 cut(s) 383
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 1 cut(s) 289
TaqI TCGA 3 cut(s) 56, 111, 200
TasI AATT 2 cut(s) 26, 413
TfiI GAWTC 3 cut(s) 4, 314, 423
TscAI CASTG 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 17, 422
TspGWI ACGGA 1 cut(s) 391
TspRI CASTG 1 cut(s) 294
Tth111I GACNNNGTC 1 cut(s) 391
XapI RAATTY 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.