Rroxscaffold_2G00114950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009720
Physical Location & Seq
Reverse (-)
41066642 .. 41068127
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114950.1

Sequence Viewer

Length: 354 bp
ATGGGGAGAGAGGGCCTCCACTTCTTCTCCTTCTCTGTCTCTCGAGGAGCATCATCGTTCTCATCGGAAACACGTGAAAGGATCCCTATTTCTCGATTCTTAAACTTGCATTTGGACACTCTTGGCCTCTTGGGTGTAATTGGGGCTCGGAGAGCCCATATTAGGATCTTCGATTATCTCCACATGTTAATGATTCTCTTAACCACGGATGTGCCCGAGACAAGGCCATTAGAACGTGCTGATGTATCTCATAAATTGAAAGATCTCATTGGCTACACTCTCGATATCAAACCTTCTCGGATACCCCATAAGGAAGCAGGCCAAGGATTAAAGAATAGAGAAGAAAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.31

Weight (kDa)

9.76

Isoelectric Point (pI)

33.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 76, 89, 173
AcvI CACGTG 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 162, 222
AflIII ACRYGT 2 cut(s) 71, 183
AgsI TTSAA 1 cut(s) 259
AleI CACNNNNGTG 1 cut(s) 209
AluBI AGCT 1 cut(s) 351
AluI AGCT 1 cut(s) 351
Alw26I GTCTC 2 cut(s) 43, 212
AlwI GGATC 3 cut(s) 76, 89, 173
Ama87I CYCGRG 2 cut(s) 42, 215
AoxI GGCC 4 cut(s) 13, 124, 224, 319
AspS9I GGNCC 1 cut(s) 13
AvaI CYCGRG 2 cut(s) 42, 215
BaeGI GKGCMC 1 cut(s) 216
BamHI GGATCC 1 cut(s) 81
BanII GRGCYC 2 cut(s) 148, 157
BbrPI CACGTG 1 cut(s) 74
BciVI GTATCC 1 cut(s) 294
BcoDI GTCTC 2 cut(s) 43, 212
BfuI GTATCC 1 cut(s) 294
BglII AGATCT 1 cut(s) 262
BmeT110I CYCGRG 2 cut(s) 42, 215
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 1 cut(s) 59
BplI GAGNNNNNCTC 1 cut(s) 32
BsaAI YACGTR 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 204, 322
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 222
BseDI CCNNGG 2 cut(s) 204, 322
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 162, 222
BseRI GAGGAG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 216
BshFI GGCC 4 cut(s) 15, 126, 226, 321
BsiHKCI CYCGRG 2 cut(s) 42, 215
BslI CCNNNNNNNGG 2 cut(s) 162, 222
BsmAI GTCTC 2 cut(s) 43, 212
BsnI GGCC 4 cut(s) 15, 126, 226, 321
BsoBI CYCGRG 2 cut(s) 42, 215
Bsp1286I GDGCHC 3 cut(s) 148, 157, 216
Bsp143I GATC 3 cut(s) 81, 165, 262
BspANI GGCC 4 cut(s) 15, 126, 226, 321
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 3 cut(s) 76, 89, 173
BssECI CCNNGG 2 cut(s) 204, 322
BssMI GATC 3 cut(s) 81, 165, 262
BssT1I CCWWGG 1 cut(s) 322
BstBAI YACGTR 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 319
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 3 cut(s) 84, 168, 265
BstMAI GTCTC 2 cut(s) 43, 212
BstMBI GATC 3 cut(s) 81, 165, 262
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 187
BstSLI GKGCMC 1 cut(s) 216
BstX2I RGATCY 3 cut(s) 81, 165, 262
BstYI RGATCY 3 cut(s) 81, 165, 262
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 4 cut(s) 15, 126, 226, 321
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 1 cut(s) 184
CviJI RGCY 8 cut(s) 15, 126, 146, 155, 226, 273, 321, 351
CviKI_1 RGCY 8 cut(s) 15, 126, 146, 155, 226, 273, 321, 351
DpnI GATC 3 cut(s) 83, 167, 264
DpnII GATC 3 cut(s) 81, 165, 262
Eco130I CCWWGG 1 cut(s) 322
Eco24I GRGCYC 2 cut(s) 148, 157
Eco32I GATATC 1 cut(s) 286
Eco72I CACGTG 1 cut(s) 74
Eco88I CYCGRG 2 cut(s) 42, 215
EcoO109I RGGNCCY 1 cut(s) 13
EcoRV GATATC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 322
EcoT38I GRGCYC 2 cut(s) 148, 157
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 1 cut(s) 187
FaiI YATR 4 cut(s) 159, 185, 252, 309
FatI CATG 1 cut(s) 183
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 2 cut(s) 148, 157
HaeIII GGCC 4 cut(s) 15, 126, 226, 321
Hin1II CATG 1 cut(s) 187
HinfI GANTC 2 cut(s) 96, 193
Hpy188I TCNGA 3 cut(s) 67, 150, 300
Hpy188III TCNNGA 3 cut(s) 42, 93, 281
HpyAV CCTTC 2 cut(s) 40, 303
HpyCH4IV ACGT 2 cut(s) 73, 235
HpyCH4V TGCA 1 cut(s) 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpySE526I ACGT 2 cut(s) 73, 235
Hsp92II CATG 1 cut(s) 187
Kzo9I GATC 3 cut(s) 81, 165, 262
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 1 cut(s) 303
LweI GCATC 1 cut(s) 59
MaeII ACGT 2 cut(s) 73, 235
MalI GATC 3 cut(s) 83, 167, 264
MboI GATC 3 cut(s) 81, 165, 262
MboII GAAGA 3 cut(s) 16, 160, 353
MflI RGATCY 3 cut(s) 81, 165, 262
MhlI GDGCHC 3 cut(s) 148, 157, 216
MluCI AATT 2 cut(s) 138, 254
MnlI CCTC 4 cut(s) 4, 26, 38, 137
MseI TTAA 4 cut(s) 101, 188, 200, 329
MslI CAYNNNNRTG 2 cut(s) 188, 209
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 3 cut(s) 81, 165, 262
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 83
NspI RCATGY 1 cut(s) 187
OliI CACNNNNGTG 1 cut(s) 209
PaeR7I CTCGAG 1 cut(s) 42
PciI ACATGT 1 cut(s) 183
PfeI GAWTC 2 cut(s) 96, 193
PmaCI CACGTG 1 cut(s) 74
PmlI CACGTG 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 74
PscI ACATGT 1 cut(s) 183
PspCI CACGTG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 3 cut(s) 81, 165, 262
RseI CAYNNNNRTG 2 cut(s) 188, 209
SaqAI TTAA 4 cut(s) 101, 188, 200, 329
Sau3AI GATC 3 cut(s) 81, 165, 262
Sau96I GGNCC 1 cut(s) 13
SduI GDGCHC 3 cut(s) 148, 157, 216
SetI ASST 4 cut(s) 76, 238, 295, 353
SfaNI GCATC 1 cut(s) 59
Sfr274I CTCGAG 1 cut(s) 42
SlaI CTCGAG 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 188, 209
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 138, 254
StyI CCWWGG 1 cut(s) 322
TaiI ACGT 2 cut(s) 76, 238
TaqI TCGA 4 cut(s) 43, 94, 171, 282
TasI AATT 2 cut(s) 138, 254
TfiI GAWTC 2 cut(s) 96, 193
Tru1I TTAA 4 cut(s) 101, 188, 200, 329
Tru9I TTAA 4 cut(s) 101, 188, 200, 329
TspGWI ACGGA 1 cut(s) 221
XceI RCATGY 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.