MD05G1175700.v1.1

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0009720
Physical Location & Seq
Reverse (-)
30332199 .. 30333527
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1175700.v1.1.491

Sequence Viewer

Length: 702 bp
ATGTCTGATTTAGACCAAATTCATCTCAGCTGGCAACAGCTTCAGTTGACAAATCTGTACGATTGTGGGATGCAGCCAATCCAAACTGTTGTTTACAAGCATATACGGGACACAGCTCCTACTATGTCCCTTGGCAGCCAAACTATTTTCATTAAGAAGACTGATTTATTTTGTTTCCGTGATCATGACAATGTTATTCAGTACTGGAATACCAACCCATGCTCTTGTACTCGTAGTTCGAAGGGAGGTACTGCACAAGTGAGGTTTCAGCCAAGAACTGGACAACTGCTGGCAGCAGCCTCGGATAAAATTGTTTCCATCTATGATGTCGAAACTGACAGGCAAACACATTCGTTCCAGGGGTACTCTGACATGGTAAACTACATTGGTTGGCATGCAAATGAAGAATATCTGGCATCTGTTAGTCAGAACTTGGTGAAGATTTGGTTGTTATCTTCGGGAGAGTGTATTCAGGAGCTCAGCTCTGACGGCAACCAGTTTCATTCGTGTGTCTTTCACCCAAGTTATTCAACTCTCTTGATCATCAGAGGAATCTCGTCTTTGGAGCTGTGGAACATGGCTGAGAACAAGAGCGTGACAGTTGCGGCACACGAGAATATAATCTCAGCTCTGGCTCAGTCACCTTATACTGGAATGGTTGCGTCAGCAAGTCATGACAGTTCCGTTAAGTTATGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

234

Amino Acids

26.19

Weight (kDa)

5.95

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B-prop_COPA_B_2nd PF04053 40 - 171 3.3e-06 COPA/B second beta-propeller
Beta-prop_THOC3 PF25174 46 - 179 7.9e-15 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 55 - 192 2.1e-14 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 62 - 232 3.7e-17 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 62 - 162 8.2e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 63 - 232 1.2e-20 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 66 - 231 1.8e-07 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 75 - 232 3.6e-13 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 76 - 154 6.9e-07 Echinoderm microtubule-associated protein second beta-propeller
WDR55 PF24796 80 - 200 3.5e-06 WDR55
Beta-prop_WDR5 PF25175 81 - 232 1e-22 WDR5 beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 91 - 212 8.8e-06 WDR90/POC16, second beta-propeller
WD40_Gbeta PF25391 94 - 214 8.9e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 131 - 233 5.6e-10 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 278
AciI CCGC 1 cut(s) 605
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 5 cut(s) 59, 203, 229, 250, 365
AfiI CCNNNNNNNGG 2 cut(s) 278, 650
AgsI TTSAA 1 cut(s) 531
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 7 cut(s) 30, 40, 116, 478, 483, 568, 629
AluI AGCT 7 cut(s) 30, 40, 116, 478, 483, 568, 629
Alw21I GWGCWC 1 cut(s) 480
ApeKI GCWGC 4 cut(s) 73, 135, 293, 296
ApoI RAATTY 1 cut(s) 18
AsuHPI GGTGA 3 cut(s) 448, 509, 633
AsuII TTCGAA 1 cut(s) 239
BanII GRGCYC 1 cut(s) 480
BauI CACGAG 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 480
BbvI GCAGC 4 cut(s) 85, 147, 305, 308
BccI CCATC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 505
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BciT130I CCWGG 1 cut(s) 359
BclI TGATCA 2 cut(s) 181, 540
BisI GCNGC 5 cut(s) 74, 136, 294, 297, 606
BlpI GCTNAGC 1 cut(s) 479
BlsI GCNGC 5 cut(s) 75, 137, 295, 298, 607
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 359
BmsI GCATC 2 cut(s) 60, 425
BpiI GAAGAC 1 cut(s) 164
BplI GAGNNNNNCTC 2 cut(s) 467, 499
Bpu1102I GCTNAGC 1 cut(s) 479
Bpu14I TTCGAA 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 130, 300, 358
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 650
Bse1I ACTGG 4 cut(s) 209, 283, 496, 655
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 3 cut(s) 130, 300, 358
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 2 cut(s) 278, 650
BseMII CTCAG 5 cut(s) 40, 493, 573, 639, 650
BseNI ACTGG 4 cut(s) 209, 283, 496, 655
BseXI GCAGC 4 cut(s) 85, 147, 305, 308
BsgI GTGCAG 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 480
BslFI GGGAC 2 cut(s) 112, 122
BslI CCNNNNNNNGG 2 cut(s) 278, 650
BsmFI GGGAC 2 cut(s) 112, 122
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 2 cut(s) 181, 540
Bsp1720I GCTNAGC 1 cut(s) 479
BspACI CCGC 1 cut(s) 605
BspCNI CTCAG 5 cut(s) 39, 492, 574, 638, 649
BspHI TCATGA 2 cut(s) 184, 673
BspT104I TTCGAA 1 cut(s) 239
BsrI ACTGG 4 cut(s) 209, 283, 496, 655
BssECI CCNNGG 3 cut(s) 130, 300, 358
BssMI GATC 2 cut(s) 181, 540
BssSI CACGAG 1 cut(s) 611
BssT1I CCWWGG 1 cut(s) 130
Bst2BI CACGAG 1 cut(s) 611
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 3 cut(s) 88, 601, 680
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 32, 291, 396
BstDEI CTNAG 5 cut(s) 26, 479, 582, 625, 636
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 2 cut(s) 184, 543
BstMBI GATC 2 cut(s) 181, 540
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstNI CCWGG 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 1 cut(s) 357
BstV1I GCAGC 4 cut(s) 85, 147, 305, 308
BstV2I GAAGAC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 32, 291, 396
CciI TCATGA 2 cut(s) 184, 673
CseI GACGC 1 cut(s) 651
Csp6I GTAC 5 cut(s) 58, 202, 228, 249, 364
CviAII CATG 6 cut(s) 185, 219, 373, 395, 577, 674
CviQI GTAC 5 cut(s) 58, 202, 228, 249, 364
DdeI CTNAG 5 cut(s) 26, 479, 582, 625, 636
DpnI GATC 2 cut(s) 183, 542
DpnII GATC 2 cut(s) 181, 540
Ecl136II GAGCTC 1 cut(s) 478
Eco130I CCWWGG 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 480
Eco53kI GAGCTC 1 cut(s) 478
Eco57I CTGAAG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 130
FaeI CATG 6 cut(s) 188, 222, 376, 398, 580, 677
FaqI GGGAC 2 cut(s) 112, 122
FatI CATG 6 cut(s) 184, 218, 372, 394, 576, 673
FbaI TGATCA 2 cut(s) 181, 540
Fnu4HI GCNGC 5 cut(s) 74, 136, 294, 297, 606
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 5 cut(s) 74, 136, 294, 297, 606
GluI GCNGC 5 cut(s) 74, 136, 294, 297, 606
HgaI GACGC 1 cut(s) 651
Hin1II CATG 6 cut(s) 188, 222, 376, 398, 580, 677
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 1 cut(s) 552
HphI GGTGA 3 cut(s) 448, 509, 633
Hpy166II GTNNAC 3 cut(s) 48, 94, 379
Hpy188I TCNGA 6 cut(s) 7, 304, 370, 429, 487, 548
Hpy188III TCNNGA 5 cut(s) 185, 459, 473, 538, 674
Hpy8I GTNNAC 3 cut(s) 48, 94, 379
HpyAV CCTTC 1 cut(s) 235
HpyCH4III ACNGT 3 cut(s) 88, 601, 680
HpyCH4V TGCA 3 cut(s) 73, 254, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
HpyF3I CTNAG 5 cut(s) 26, 479, 582, 625, 636
Hsp92II CATG 6 cut(s) 188, 222, 376, 398, 580, 677
Ksp22I TGATCA 2 cut(s) 181, 540
Kzo9I GATC 2 cut(s) 181, 540
LmnI GCTCC 3 cut(s) 121, 475, 565
Lsp1109I GCAGC 4 cut(s) 85, 147, 305, 308
LweI GCATC 2 cut(s) 60, 425
MaeIII GTNAC 2 cut(s) 595, 639
MalI GATC 2 cut(s) 183, 542
MboI GATC 2 cut(s) 181, 540
MboII GAAGA 4 cut(s) 169, 416, 447, 451
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 2 cut(s) 18, 309
MnlI CCTC 4 cut(s) 239, 255, 310, 542
MseI TTAA 2 cut(s) 153, 687
MslI CAYNNNNRTG 3 cut(s) 189, 399, 507
MspA1I CMGCKG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 489
NdeII GATC 2 cut(s) 181, 540
NlaIII CATG 6 cut(s) 188, 222, 376, 398, 580, 677
NmuCI GTSAC 2 cut(s) 595, 639
NspI RCATGY 1 cut(s) 398
NspV TTCGAA 1 cut(s) 239
PaeI GCATGC 1 cut(s) 398
PagI TCATGA 2 cut(s) 184, 673
PfeI GAWTC 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 5 cut(s) 75, 137, 295, 298, 607
Psp124BI GAGCTC 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PsrI GAACNNNNNNTAC 2 cut(s) 220, 252
PvuII CAGCTG 1 cut(s) 30
RsaI GTAC 5 cut(s) 59, 203, 229, 250, 365
RsaNI GTAC 5 cut(s) 58, 202, 228, 249, 364
RseI CAYNNNNRTG 3 cut(s) 189, 399, 507
SacI GAGCTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 153, 687
SatI GCNGC 5 cut(s) 74, 136, 294, 297, 606
Sau3AI GATC 2 cut(s) 181, 540
ScaI AGTACT 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 1 cut(s) 480
SfaNI GCATC 2 cut(s) 60, 425
SfuI TTCGAA 1 cut(s) 239
SmiMI CAYNNNNRTG 3 cut(s) 189, 399, 507
SphI GCATGC 1 cut(s) 398
Sse9I AATT 2 cut(s) 18, 309
SsiI CCGC 1 cut(s) 605
SstI GAGCTC 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 130
TaaI ACNGT 3 cut(s) 88, 601, 680
TaqI TCGA 2 cut(s) 239, 330
TasI AATT 2 cut(s) 18, 309
TatI WGTACW 2 cut(s) 201, 227
TauI GCSGC 1 cut(s) 608
TfiI GAWTC 1 cut(s) 552
Tru1I TTAA 2 cut(s) 153, 687
Tru9I TTAA 2 cut(s) 153, 687
TseFI GTSAC 2 cut(s) 595, 639
TseI GCWGC 4 cut(s) 73, 135, 293, 296
Tsp45I GTSAC 2 cut(s) 595, 639
TspDTI ATGAA 4 cut(s) 11, 139, 417, 491
TspGWI ACGGA 2 cut(s) 167, 673
Van91I CCANNNNNTGG 1 cut(s) 278
XapI RAATTY 1 cut(s) 18
XceI RCATGY 1 cut(s) 398
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.