Rroxscaffold_3G00224400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009720
Physical Location & Seq
Reverse (-)
7513524 .. 7547929
34406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224400.1

Sequence Viewer

Length: 846 bp
ATGGTGGATAGTATGTTATCAAAGCGGTGCAGGATGAGAAAAAATAAGTCTCTTTTGCTTCAACAGATTCCCTATAACTATCTCTATTTTAAGGAAAGTGTAACATCACACTTTCGATCAAGCACTTTCAACATCCAAAAAGGACTCACTTCCACAAATCAATCCTCAACAACTCAACGAGTTAAATCCAGAGATTGCTCGATAACCTGTGGGACAAATGTTGTAAAGTTTGGGAGTTACACTTGTGTTTTTGGATTATGTTGTATGGTTCTTATTTCAATTGTAAATTGTGGAGTTGTTGTGATTTGGGGAGCAGGACGGCTCCAGGAGAATAAGGATGTTGCTACAAAGCAGAAAACTGCAGTTCAGAATCAGCTTATCAAGAAAAGTTTTGGAGAGCTTTTCTTGCAATCTTTCAAGCAGACTCTTGGAAAAAGGCTAGCATTCCTTGAAGACATGATCTTATCCATTTCAAATTTGTTTGTCGGTGGCCGCATCATTCGGAAGTACGCAACAATGAACTCCCCGCAATGTCTTTATCCGGAAGTGTCAACATCCGGAAGCTTGGATGCATGTACACGCCATGAGCATCGAAGCACCACCGTCGGCATGAACAACATCGACAATACGAGCATGAACGTCGACCATTTCGAGCTCCGTAACCGGCCTCCTTACCTCCCCTTCGCTATTGTTGAACCACGAGCTCCGAACCTAAAAGCTCGATCGTTCGGAGACTCGGGCTTTCGAATCGGGCTTGAAGAGCTGTTCAACACCATCTCTCTCTCTCCTCTTCGTGGGATGGAATCGGAAGCCCCGCAGCAAGCTACTCAACAAAGACAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

31.64

Weight (kDa)

9.54

Isoelectric Point (pI)

49.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 642
AccIII TCCGGA 2 cut(s) 541, 557
AciI CCGC 4 cut(s) 25, 493, 527, 815
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 1 cut(s) 475
AfaI GTAC 2 cut(s) 509, 577
AfiI CCNNNNNNNGG 1 cut(s) 794
AgsI TTSAA 9 cut(s) 62, 130, 279, 418, 452, 474, 695, 758, 769
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 8 cut(s) 376, 400, 564, 655, 704, 719, 763, 824
AluI AGCT 8 cut(s) 376, 400, 564, 655, 704, 719, 763, 824
Alw21I GWGCWC 2 cut(s) 657, 706
Alw26I GTCTC 2 cut(s) 54, 726
Ama87I CYCGRG 1 cut(s) 736
Aor13HI TCCGGA 2 cut(s) 541, 557
AoxI GGCC 2 cut(s) 490, 665
ApeKI GCWGC 1 cut(s) 817
ApoI RAATTY 1 cut(s) 475
AsuII TTCGAA 1 cut(s) 745
AsuNHI GCTAGC 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 736
BanII GRGCYC 2 cut(s) 657, 706
BauI CACGAG 1 cut(s) 699
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 2 cut(s) 657, 706
BbvI GCAGC 1 cut(s) 829
BccI CCATC 2 cut(s) 782, 793
BceAI ACGGC 1 cut(s) 335
BcgI CGANNNNNNTGC 4 cut(s) 586, 620, 622, 656
BciT130I CCWGG 1 cut(s) 326
BcoDI GTCTC 2 cut(s) 54, 726
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 2 cut(s) 493, 818
BlsI GCNGC 2 cut(s) 494, 819
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 736
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 3 cut(s) 504, 559, 598
BmtI GCTAGC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 459
BpmI CTGGAG 1 cut(s) 308
Bpu14I TTCGAA 1 cut(s) 745
BsaWI WCCGGW 2 cut(s) 541, 557
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 794
Bse118I RCCGGY 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 536
BseAI TCCGGA 2 cut(s) 541, 557
BseBI CCWGG 1 cut(s) 326
BseGI GGATG 6 cut(s) 39, 132, 343, 554, 574, 804
BseLI CCNNNNNNNGG 1 cut(s) 794
BseMI GCAATG 1 cut(s) 536
BseRI GAGGAG 1 cut(s) 777
BseXI GCAGC 1 cut(s) 829
BsgI GTGCAG 1 cut(s) 49
Bsh1285I CGRYCG 1 cut(s) 725
BshFI GGCC 2 cut(s) 492, 667
BsiEI CGRYCG 1 cut(s) 725
BsiHKAI GWGCWC 2 cut(s) 657, 706
BsiHKCI CYCGRG 1 cut(s) 736
BsiSI CCGG 3 cut(s) 542, 558, 664
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 794
BsmAI GTCTC 2 cut(s) 54, 726
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 2 cut(s) 492, 667
BsoBI CYCGRG 1 cut(s) 736
Bsp119I TTCGAA 1 cut(s) 745
Bsp1286I GDGCHC 2 cut(s) 657, 706
Bsp13I TCCGGA 2 cut(s) 541, 557
Bsp1407I TGTACA 1 cut(s) 575
Bsp143I GATC 3 cut(s) 116, 459, 722
BspACI CCGC 4 cut(s) 25, 493, 527, 815
BspANI GGCC 2 cut(s) 492, 667
BspEI TCCGGA 2 cut(s) 541, 557
BspLI GGNNCC 1 cut(s) 323
BspMAI CTGCAG 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 443
BspQI GCTCTTC 1 cut(s) 753
BspT104I TTCGAA 1 cut(s) 745
BsrDI GCAATG 1 cut(s) 536
BsrFI RCCGGY 1 cut(s) 663
BsrGI TGTACA 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 663
BssMI GATC 3 cut(s) 116, 459, 722
BssSI CACGAG 1 cut(s) 699
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 1 cut(s) 604
Bst6I CTCTTC 2 cut(s) 753, 795
BstAUI TGTACA 1 cut(s) 575
BstBI TTCGAA 1 cut(s) 745
BstC8I GCNNGC 2 cut(s) 441, 822
BstF5I GGATG 6 cut(s) 39, 132, 343, 554, 574, 804
BstKTI GATC 3 cut(s) 119, 462, 725
BstMAI GTCTC 2 cut(s) 54, 726
BstMBI GATC 3 cut(s) 116, 459, 722
BstMCI CGRYCG 1 cut(s) 725
BstMWI GCNNNNNNNGC 2 cut(s) 406, 760
BstNI CCWGG 1 cut(s) 326
BstNSI RCATGY 1 cut(s) 576
BstSCI CCNGG 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 829
BstV2I GAAGAC 1 cut(s) 459
BsuRI GGCC 2 cut(s) 492, 667
BtsCI GGATG 6 cut(s) 39, 132, 343, 554, 574, 804
Cac8I GCNNGC 2 cut(s) 441, 822
Cfr10I RCCGGY 1 cut(s) 663
Csp6I GTAC 2 cut(s) 508, 576
CviAII CATG 5 cut(s) 457, 573, 584, 610, 634
CviQI GTAC 2 cut(s) 508, 576
DpnI GATC 3 cut(s) 118, 461, 724
DpnII GATC 3 cut(s) 116, 459, 722
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 753, 795
EarI CTCTTC 2 cut(s) 753, 795
Ecl136II GAGCTC 2 cut(s) 655, 704
Eco24I GRGCYC 2 cut(s) 657, 706
Eco53kI GAGCTC 2 cut(s) 655, 704
Eco88I CYCGRG 1 cut(s) 736
EcoICRI GAGCTC 2 cut(s) 655, 704
EcoRII CCWGG 1 cut(s) 324
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 2 cut(s) 657, 706
FaeI CATG 5 cut(s) 460, 576, 587, 613, 637
FaiI YATR 9 cut(s) 14, 75, 259, 266, 458, 574, 585, 611, 635
FaqI GGGAC 1 cut(s) 226
FatI CATG 5 cut(s) 456, 572, 583, 609, 633
FauI CCCGC 2 cut(s) 534, 822
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 2 cut(s) 493, 818
FokI GGATG 6 cut(s) 46, 119, 350, 541, 581, 811
FriOI GRGCYC 2 cut(s) 657, 706
Fsp4HI GCNGC 2 cut(s) 493, 818
FspBI CTAG 1 cut(s) 440
GluI GCNGC 2 cut(s) 493, 818
GsuI CTGGAG 1 cut(s) 308
HaeIII GGCC 2 cut(s) 492, 667
HapII CCGG 3 cut(s) 542, 558, 664
Hin1II CATG 5 cut(s) 460, 576, 587, 613, 637
HincII GTYRAC 2 cut(s) 552, 643
HindII GTYRAC 2 cut(s) 552, 643
HindIII AAGCTT 1 cut(s) 562
HinfI GANTC 7 cut(s) 67, 144, 370, 424, 734, 747, 803
HpaII CCGG 3 cut(s) 542, 558, 664
Hpy166II GTNNAC 3 cut(s) 552, 578, 643
Hpy188I TCNGA 5 cut(s) 369, 504, 708, 731, 808
Hpy188III TCNNGA 4 cut(s) 189, 382, 542, 558
Hpy8I GTNNAC 3 cut(s) 552, 578, 643
Hpy99I CGWCG 2 cut(s) 608, 644
HpyAV CCTTC 1 cut(s) 691
HpyCH4III ACNGT 1 cut(s) 604
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 4 cut(s) 30, 362, 409, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 406, 760
HpySE526I ACGT 1 cut(s) 639
Hsp92II CATG 5 cut(s) 460, 576, 587, 613, 637
Kpn2I TCCGGA 2 cut(s) 541, 557
Kzo9I GATC 3 cut(s) 116, 459, 722
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 4 cut(s) 311, 327, 660, 709
LpnPI CCDG 9 cut(s) 16, 202, 220, 300, 311, 338, 555, 571, 677
Lsp1109I GCAGC 1 cut(s) 829
LweI GCATC 3 cut(s) 504, 559, 598
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 3 cut(s) 100, 236, 659
MalI GATC 3 cut(s) 118, 461, 724
MboI GATC 3 cut(s) 116, 459, 722
MboII GAAGA 3 cut(s) 464, 770, 782
MfeI CAATTG 1 cut(s) 279
MhlI GDGCHC 2 cut(s) 657, 706
MluCI AATT 3 cut(s) 279, 286, 475
MlyI GAGTC 3 cut(s) 138, 418, 728
MnlI CCTC 4 cut(s) 175, 678, 686, 798
Mph1103I ATGCAT 1 cut(s) 574
MroI TCCGGA 2 cut(s) 541, 557
MseI TTAA 2 cut(s) 90, 183
MspI CCGG 3 cut(s) 542, 558, 664
MspR9I CCNGG 1 cut(s) 326
MunI CAATTG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 443
MvaI CCWGG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 406, 760
NdeII GATC 3 cut(s) 116, 459, 722
NheI GCTAGC 1 cut(s) 439
NlaIII CATG 5 cut(s) 460, 576, 587, 613, 637
NlaIV GGNNCC 1 cut(s) 323
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 576
NspV TTCGAA 1 cut(s) 745
PciSI GCTCTTC 1 cut(s) 753
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PctI GAATGC 1 cut(s) 443
PfeI GAWTC 4 cut(s) 67, 370, 747, 803
PfoI TCCNGGA 1 cut(s) 324
PkrI GCNGC 2 cut(s) 494, 819
Ple19I CGATCG 1 cut(s) 725
PleI GAGTC 3 cut(s) 138, 418, 728
PpsI GAGTC 3 cut(s) 138, 418, 728
Psp124BI GAGCTC 2 cut(s) 657, 706
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 323
PstI CTGCAG 1 cut(s) 364
PvuI CGATCG 1 cut(s) 725
RsaI GTAC 2 cut(s) 509, 577
RsaNI GTAC 2 cut(s) 508, 576
SacI GAGCTC 2 cut(s) 657, 706
SalI GTCGAC 1 cut(s) 641
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 2 cut(s) 90, 183
SatI GCNGC 2 cut(s) 493, 818
Sau3AI GATC 3 cut(s) 116, 459, 722
SchI GAGTC 3 cut(s) 138, 418, 728
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 2 cut(s) 657, 706
SfaNI GCATC 3 cut(s) 504, 559, 598
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 745
Sse9I AATT 3 cut(s) 279, 286, 475
SsiI CCGC 4 cut(s) 25, 493, 527, 815
SspMI CTAG 1 cut(s) 440
SstI GAGCTC 2 cut(s) 657, 706
StyD4I CCNGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 604
TaiI ACGT 1 cut(s) 642
TaqI TCGA 8 cut(s) 115, 200, 592, 621, 642, 651, 721, 745
TasI AATT 3 cut(s) 279, 286, 475
TatI WGTACW 1 cut(s) 575
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 4 cut(s) 67, 370, 747, 803
Tru1I TTAA 2 cut(s) 90, 183
Tru9I TTAA 2 cut(s) 90, 183
TseI GCWGC 1 cut(s) 817
TspDTI ATGAA 3 cut(s) 533, 626, 650
TspGWI ACGGA 1 cut(s) 647
XapI RAATTY 1 cut(s) 475
XceI RCATGY 1 cut(s) 576
XmiI GTMKAC 1 cut(s) 642
XspI CTAG 1 cut(s) 440
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.