Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009720

Physical Location & Seq

Genomic Coordinates Reverse (-)

67701529 .. 67708725

Gene Structure 7197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00276410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAAGGGGAGGAGTGGAAGGGCAGCAGCCCTCCCCTTGGTTGCGCTGCGGCTACCGAAGAAAAAAGTGAGTGTGTCCTCCGCTTCTCTAAGGAAGAGAGTGATCATGAAAATGGGTGGCTGCTGGAGGTCTTCGTGAGAAAAAGAAGGGATAAGATGCAGTCAAAAGATCAGAGCTCCTCCAAAAATTGGGCACGTGTCCCCTCACCTATTGCTATGCTTTTCGGGAATGAAAGACAAGACCTTAGGGAAAATGATCTCCATGAAAAACCCGACCTTCGACGCCGGTCTAGTGACCGGAGAAGGCCGGAATCGCCGGAAATCGGCAAAACTATCAAATCGCATTCGTTACCTTTCCGGCGAGAAATCGAGCTTCTCTCGGCCAAATCGTTGCAAAACACCACCGGCAACGTGTCGAGGGGAAGGAGACGAGCTCGGGGATGGCCGAACTCGCCGTGGGGTCGGCCGAGGAGGAAGAAATCGGAGGCGCTCCGATTCGGCCGAAAAGGGAAGGAAATCGGGGGAGAGGAGAGAGAGAGACTTACCCGGTTGGATGTGCCCGAGACAAGGCCATTAGAACGTGCTGATGTATCTCATAAATTGAAAGATCTCATTGGCTACACTCTCGATATCAAACTTTCTCGTATACCCCATAAGGAAGCAGGCCAAGGATTAAAGAATAGAGAAGAAAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

26.86

Weight (kDa)

10.06

Isoelectric Point (pI)

77.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009720)

Species	Orthologous Gene IDs
malus_domestica	MD03G1148400.v1.1 MD05G1175700.v1.1 MD10G1012100.v1.1
pyrus_communis	pycom03g10260 pycom05g16230
rosa_chinensis	RchiOBHm_Chr1g0330921 RchiOBHm_Chr1g0356631 RchiOBHm_Chr5g0083671
rosa_laevigata	RLG00000008846
rosa_multiflora	Rmu_sc0000650.1_g000020
rosa_roxburghii	Rroxscaffold_2G00114950 Rroxscaffold_2G00138200 Rroxscaffold_3G00218770 Rroxscaffold_3G00224400 Rroxscaffold_3G00276410 Rroxscaffold_4G00325870 Rroxscaffold_7G00196860
rosa_samantha	Rh1CG247500 Rh2DG367700 Rh3CG314600 Rh7BG472300 Rh7DG486100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	189
AccI	GTMKAC	1 cut(s)	646
AciI	CCGC	2 cut(s)	50, 82
AcoI	YGGCCR	4 cut(s)	381, 443, 464, 499
AcvI	CACGTG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	283
AfiI	CCNNNNNNNGG	4 cut(s)	38, 189, 323, 567
AflIII	ACRYGT	2 cut(s)	196, 411
AgsI	TTSAA	1 cut(s)	604
AluBI	AGCT	4 cut(s)	177, 373, 434, 696
AluI	AGCT	4 cut(s)	177, 373, 434, 696
Alw21I	GWGCWC	2 cut(s)	179, 436
Alw26I	GTCTC	3 cut(s)	421, 532, 557
Ama87I	CYCGRG	2 cut(s)	435, 560
AoxI	GGCC	7 cut(s)	305, 381, 443, 464, 499, 569, 664
ApeKI	GCWGC	4 cut(s)	24, 27, 47, 121
AspLEI	GCGC	2 cut(s)	47, 490
AsuC2I	CCSGG	1 cut(s)	547
AsuHPI	GGTGA	1 cut(s)	198
AvaI	CYCGRG	2 cut(s)	435, 560
AxyI	CCTNAGG	1 cut(s)	245
BaeGI	GKGCMC	2 cut(s)	196, 561
BanII	GRGCYC	2 cut(s)	179, 436
BbrPI	CACGTG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	179, 436
BbvI	GCAGC	4 cut(s)	34, 36, 39, 108
BccI	CCATC	1 cut(s)	435
BceAI	ACGGC	1 cut(s)	439
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	547
BcoDI	GTCTC	3 cut(s)	421, 532, 557
BfaI	CTAG	1 cut(s)	291
BfoI	RGCGCY	1 cut(s)	491
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	5 cut(s)	25, 28, 48, 51, 122
BlsI	GCNGC	5 cut(s)	26, 29, 49, 52, 123
Bme1390I	CCNGG	1 cut(s)	547
BmeT110I	CYCGRG	2 cut(s)	435, 560
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	1 cut(s)	147
BoxI	GACNNNNGTC	1 cut(s)	286
BpiI	GAAGAC	1 cut(s)	124
BplI	GAGNNNNNCTC	4 cut(s)	362, 394, 418, 450
BpmI	CTGGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	547
BsaAI	YACGTR	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	4 cut(s)	37, 455, 467, 667
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 189, 323, 567
Bse118I	RCCGGY	2 cut(s)	285, 404
Bse21I	CCTNAGG	1 cut(s)	245
BseDI	CCNNGG	4 cut(s)	37, 455, 467, 667
BseGI	GGATG	2 cut(s)	446, 559
BseLI	CCNNNNNNNGG	4 cut(s)	38, 189, 323, 567
BseRI	GAGGAG	4 cut(s)	26, 169, 484, 542
BseSI	GKGCMC	2 cut(s)	196, 561
BseX3I	CGGCCG	2 cut(s)	464, 499
BseXI	GCAGC	4 cut(s)	34, 36, 39, 108
Bsh1285I	CGRYCG	2 cut(s)	467, 502
BshFI	GGCC	7 cut(s)	307, 383, 445, 466, 501, 571, 666
BsiEI	CGRYCG	2 cut(s)	467, 502
BsiHKAI	GWGCWC	2 cut(s)	179, 436
BsiHKCI	CYCGRG	2 cut(s)	435, 560
BsiSI	CCGG	7 cut(s)	286, 298, 308, 317, 358, 405, 547
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	4 cut(s)	38, 189, 323, 567
BsmAI	GTCTC	3 cut(s)	421, 532, 557
BsmBI	CGTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	7 cut(s)	307, 383, 445, 466, 501, 571, 666
BsoBI	CYCGRG	2 cut(s)	435, 560
Bsp1286I	GDGCHC	4 cut(s)	179, 196, 436, 561
Bsp143I	GATC	4 cut(s)	103, 169, 256, 607
BspACI	CCGC	2 cut(s)	50, 82
BspANI	GGCC	7 cut(s)	307, 383, 445, 466, 501, 571, 666
BspHI	TCATGA	1 cut(s)	106
BsrFI	RCCGGY	2 cut(s)	285, 404
BssAI	RCCGGY	2 cut(s)	285, 404
BssECI	CCNNGG	4 cut(s)	37, 455, 467, 667
BssMI	GATC	4 cut(s)	103, 169, 256, 607
BssNAI	GTATAC	1 cut(s)	647
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	2 cut(s)	37, 667
Bst1107I	GTATAC	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	283
BstBAI	YACGTR	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	664
BstDEI	CTNAG	2 cut(s)	90, 245
BstDSI	CCRYGG	1 cut(s)	455
BstF5I	GGATG	2 cut(s)	446, 559
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	2 cut(s)	47, 490
BstKTI	GATC	4 cut(s)	106, 172, 259, 610
BstMAI	GTCTC	3 cut(s)	421, 532, 557
BstMBI	GATC	4 cut(s)	103, 169, 256, 607
BstMCI	CGRYCG	2 cut(s)	467, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 451
BstPAI	GACNNNNGTC	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	545
BstSLI	GKGCMC	2 cut(s)	196, 561
BstV1I	GCAGC	4 cut(s)	34, 36, 39, 108
BstV2I	GAAGAC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BstZ17I	GTATAC	1 cut(s)	647
BstZI	CGGCCG	2 cut(s)	464, 499
Bsu36I	CCTNAGG	1 cut(s)	245
BsuRI	GGCC	7 cut(s)	307, 383, 445, 466, 501, 571, 666
BtgI	CCRYGG	1 cut(s)	455
BtsCI	GGATG	2 cut(s)	446, 559
Cac8I	GCNNGC	1 cut(s)	664
CciI	TCATGA	1 cut(s)	106
CfoI	GCGC	2 cut(s)	47, 490
Cfr10I	RCCGGY	2 cut(s)	285, 404
CseI	GACGC	1 cut(s)	291
CviAII	CATG	2 cut(s)	107, 263
DdeI	CTNAG	2 cut(s)	90, 245
DpnI	GATC	4 cut(s)	105, 171, 258, 609
DpnII	GATC	4 cut(s)	103, 169, 256, 607
EaeI	YGGCCR	4 cut(s)	381, 443, 464, 499
EagI	CGGCCG	2 cut(s)	464, 499
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Ecl136II	GAGCTC	2 cut(s)	177, 434
EclXI	CGGCCG	2 cut(s)	464, 499
Eco130I	CCWWGG	2 cut(s)	37, 667
Eco24I	GRGCYC	2 cut(s)	179, 436
Eco32I	GATATC	1 cut(s)	631
Eco52I	CGGCCG	2 cut(s)	464, 499
Eco53kI	GAGCTC	2 cut(s)	177, 434
Eco72I	CACGTG	1 cut(s)	197
Eco81I	CCTNAGG	1 cut(s)	245
Eco88I	CYCGRG	2 cut(s)	435, 560
EcoICRI	GAGCTC	2 cut(s)	177, 434
EcoRV	GATATC	1 cut(s)	631
EcoT14I	CCWWGG	2 cut(s)	37, 667
EcoT38I	GRGCYC	2 cut(s)	179, 436
ErhI	CCWWGG	2 cut(s)	37, 667
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	2 cut(s)	110, 266
FaiI	YATR	6 cut(s)	108, 218, 264, 597, 647, 654
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	2 cut(s)	106, 262
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	646
Fnu4HI	GCNGC	5 cut(s)	25, 28, 48, 51, 122
FokI	GGATG	2 cut(s)	453, 566
FriOI	GRGCYC	2 cut(s)	179, 436
Fsp4HI	GCNGC	5 cut(s)	25, 28, 48, 51, 122
FspBI	CTAG	1 cut(s)	291
GlaI	GCGC	2 cut(s)	46, 489
GluI	GCNGC	5 cut(s)	25, 28, 48, 51, 122
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	7 cut(s)	307, 383, 445, 466, 501, 571, 666
HapII	CCGG	7 cut(s)	286, 298, 308, 317, 358, 405, 547
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	2 cut(s)	47, 490
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	110, 266
Hin6I	GCGC	2 cut(s)	45, 488
HinP1I	GCGC	2 cut(s)	45, 488
HinfI	GANTC	2 cut(s)	311, 495
HpaII	CCGG	7 cut(s)	286, 298, 308, 317, 358, 405, 547
HphI	GGTGA	1 cut(s)	198
Hpy166II	GTNNAC	1 cut(s)	647
Hpy188I	TCNGA	3 cut(s)	174, 484, 494
Hpy188III	TCNNGA	4 cut(s)	107, 136, 226, 626
Hpy8I	GTNNAC	1 cut(s)	647
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	6 cut(s)	13, 141, 287, 297, 417, 505
HpyCH4IV	ACGT	3 cut(s)	196, 411, 580
HpyCH4V	TGCA	2 cut(s)	160, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 451
HpyF3I	CTNAG	2 cut(s)	90, 245
HpySE526I	ACGT	3 cut(s)	196, 411, 580
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	2 cut(s)	110, 266
HspAI	GCGC	2 cut(s)	45, 488
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	103, 169, 256, 607
LmnI	GCTCC	2 cut(s)	182, 495
LpnPI	CCDG	9 cut(s)	110, 299, 311, 321, 330, 371, 418, 560, 648
Lsp1109I	GCAGC	4 cut(s)	34, 36, 39, 108
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	3 cut(s)	196, 411, 580
MaeIII	GTNAC	2 cut(s)	293, 348
MalI	GATC	4 cut(s)	105, 171, 258, 609
MboI	GATC	4 cut(s)	103, 169, 256, 607
MboII	GAAGA	5 cut(s)	71, 107, 124, 487, 698
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	4 cut(s)	179, 196, 436, 561
MluCI	AATT	2 cut(s)	187, 599
MmeI	TCCRAC	1 cut(s)	531
MseI	TTAA	1 cut(s)	674
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	7 cut(s)	286, 298, 308, 317, 358, 405, 547
MspR9I	CCNGG	1 cut(s)	547
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	2 cut(s)	313, 451
NciI	CCSGG	1 cut(s)	547
NdeII	GATC	4 cut(s)	103, 169, 256, 607
NlaIII	CATG	2 cut(s)	110, 266
NmeAIII	GCCGAG	2 cut(s)	359, 492
NmuCI	GTSAC	1 cut(s)	293
PagI	TCATGA	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
PctI	GAATGC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	311, 495
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	5 cut(s)	26, 29, 49, 52, 123
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
Ppu21I	YACGTR	1 cut(s)	197
PshAI	GACNNNNGTC	1 cut(s)	286
Psp124BI	GAGCTC	2 cut(s)	179, 436
PspCI	CACGTG	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	111
SacI	GAGCTC	2 cut(s)	179, 436
SaqAI	TTAA	1 cut(s)	674
SatI	GCNGC	5 cut(s)	25, 28, 48, 51, 122
Sau3AI	GATC	4 cut(s)	103, 169, 256, 607
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	4 cut(s)	179, 196, 436, 561
SfaNI	GCATC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	2 cut(s)	187, 599
SsiI	CCGC	2 cut(s)	50, 82
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	2 cut(s)	179, 436
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	2 cut(s)	37, 667
TaiI	ACGT	3 cut(s)	199, 414, 583
TaqI	TCGA	4 cut(s)	280, 369, 416, 627
TasI	AATT	2 cut(s)	187, 599
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	311, 495
Tru1I	TTAA	1 cut(s)	674
Tru9I	TTAA	1 cut(s)	674
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	4 cut(s)	24, 27, 47, 121
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	3 cut(s)	123, 246, 279
Van91I	CCANNNNNTGG	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	646
XspI	CTAG	1 cut(s)	291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.