Rroxscaffold_2G00138200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009720
Physical Location & Seq
Reverse (-)
76319595 .. 76336346
16752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00138200.1

Sequence Viewer

Length: 885 bp
ATGTGCGTTGTGGTCATGGACATCGGTTTCGACCGATGGGGAGGAGACGAGCTTGGGGATAGCCGGATTTCGTCGTGGGTCAGCCGGAGGAGGAAGAAATCGAAGGAGAACCAACTCGGGCCGAAGAGGAAGGAGTCGGGGGAGAAGAGAGGGAGAGTTACCGTGGGTTTCCGAAAATGGAAACCTACTGTGGGTTGCTTCGCCTCGTGGTCGTCTTTGACTCCGCAAGTTTTTCCCGCGCTTCGGGCTTTTTCTCGGCTTGACAACACTTGTGGATCAAACATTGAGAAGCTTGCCAGGTTGCAACATCAAACATCATCAGTTCATCATCAACCCAGTTTTGGCGTACAACAACTAGCTGTTTACAACCCCTTCAATTCCAAACGTGCTCTTTTACATTGTGCATGCACAAGGACTTTTGTCCACAGCCAAAGGACAAAAGTAGGAAGAGTTAAATTGGATAGAGACCTTATATGGATTAGATCCATTATGAACCCATTAACAGTTTACCACAGTGATCCAAAAGTTAACTGCTGGGTGTTTGCATTGAACCGACCATATTATAAACAGAGGAAACCCCTCCAGTCCTTCCATTTTCTCCGACCAAGCAACTTCTTCACTGTTTATTCTCCAGCCTCTCCCAAAGTACTTTCTGGGTTCCTTACCCAACAAAGCTCCAAGTTGGACTTGCACTGGAAACTCCAACGTCAGTGTTGGTCATGTGACGAGAGAGATAAACACTTGATTGTGAAGGTAGCAGAAAGATCTCATCCTAACTCTCTTCCGTTTAGGTTCTTTGTACAAAAATCTCTATGGGAAGACTCTTCAAGGCAATGCCTTAATGTCGTGTGCGAAGACCAAGTCCATCTTCCAGCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

294

Amino Acids

34.03

Weight (kDa)

10.1

Isoelectric Point (pI)

56.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 564
AccII CGCG 1 cut(s) 239
AciI CCGC 2 cut(s) 224, 237
AclWI GGATC 3 cut(s) 283, 477, 512
AfaI GTAC 3 cut(s) 348, 648, 801
AfiI CCNNNNNNNGG 3 cut(s) 191, 243, 341
AgsI TTSAA 3 cut(s) 376, 550, 828
AjnI CCWGG 1 cut(s) 296
AjuI GAANNNNNNNTTGG 2 cut(s) 852, 884
AluBI AGCT 5 cut(s) 52, 292, 359, 675, 875
AluI AGCT 5 cut(s) 52, 292, 359, 675, 875
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 39, 459
AlwI GGATC 3 cut(s) 283, 477, 512
AlwNI CAGNNNCTG 1 cut(s) 878
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 875, 878
ArsI GACNNNNNNTTYG 4 cut(s) 11, 43, 846, 878
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 116
BauI CACGAG 1 cut(s) 205
BbsI GAAGAC 2 cut(s) 825, 861
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 2 cut(s) 862, 865
BccI CCATC 2 cut(s) 30, 873
BciT130I CCWGG 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 39, 459
BfaI CTAG 1 cut(s) 356
BglII AGATCT 1 cut(s) 764
BisI GCNGC 2 cut(s) 876, 879
BlsI GCNGC 2 cut(s) 877, 880
BmcAI AGTACT 1 cut(s) 648
Bme1390I CCNGG 1 cut(s) 298
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 659
BmrFI CCNGG 1 cut(s) 298
BmrI ACTGGG 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 330
BoxI GACNNNNGTC 1 cut(s) 419
BpiI GAAGAC 2 cut(s) 825, 861
BpmI CTGGAG 2 cut(s) 566, 615
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 243, 341
Bse1I ACTGG 3 cut(s) 336, 583, 698
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 3 cut(s) 191, 243, 341
BseMI GCAATG 1 cut(s) 839
BseNI ACTGG 3 cut(s) 336, 583, 698
BseRI GAGGAG 2 cut(s) 57, 103
BseXI GCAGC 2 cut(s) 862, 865
BseYI CCCAGC 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 2 cut(s) 64, 85
BslI CCNNNNNNNGG 3 cut(s) 191, 243, 341
BsmAI GTCTC 2 cut(s) 39, 459
BsmBI CGTCTC 1 cut(s) 39
BsnI GGCC 1 cut(s) 121
Bso31I GGTCTC 1 cut(s) 459
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 391
Bsp1407I TGTACA 1 cut(s) 799
Bsp143I GATC 4 cut(s) 275, 482, 517, 764
BspACI CCGC 2 cut(s) 224, 237
BspANI GGCC 1 cut(s) 121
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 659
BspPI GGATC 3 cut(s) 283, 477, 512
BspTNI GGTCTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 799
BsrI ACTGG 3 cut(s) 336, 583, 698
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 4 cut(s) 275, 482, 517, 764
BssSI CACGAG 1 cut(s) 205
Bst2BI CACGAG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 298
Bst4CI ACNGT 5 cut(s) 163, 190, 505, 515, 622
Bst6I CTCTTC 5 cut(s) 119, 140, 442, 786, 829
BstAUI TGTACA 1 cut(s) 799
BstC8I GCNNGC 2 cut(s) 294, 406
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 4 cut(s) 278, 485, 520, 767
BstMAI GTCTC 2 cut(s) 39, 459
BstMBI GATC 4 cut(s) 275, 482, 517, 764
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 298
BstNSI RCATGY 1 cut(s) 408
BstPAI GACNNNNGTC 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 296
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 862, 865
BstV2I GAAGAC 2 cut(s) 825, 861
BstX2I RGATCY 2 cut(s) 482, 764
BstYI RGATCY 2 cut(s) 482, 764
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 1 cut(s) 769
BtsIMutI CAGTG 4 cut(s) 520, 618, 691, 716
Cac8I GCNNGC 2 cut(s) 294, 406
CaiI CAGNNNCTG 1 cut(s) 878
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 3 cut(s) 347, 647, 800
CspCI CAANNNNNGTGG 2 cut(s) 253, 288
CviAII CATG 3 cut(s) 16, 405, 720
CviQI GTAC 3 cut(s) 347, 647, 800
DpnI GATC 4 cut(s) 277, 484, 519, 766
DpnII GATC 4 cut(s) 275, 482, 517, 764
Eam1104I CTCTTC 5 cut(s) 119, 140, 442, 786, 829
EarI CTCTTC 5 cut(s) 119, 140, 442, 786, 829
Eco31I GGTCTC 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 296
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 3 cut(s) 19, 408, 723
FalI AAGNNNNNCTT 4 cut(s) 671, 703, 852, 884
FatI CATG 3 cut(s) 15, 404, 719
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 876, 879
FokI GGATG 1 cut(s) 756
Fsp4HI GCNGC 2 cut(s) 876, 879
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 240
GluI GCNGC 2 cut(s) 876, 879
GsaI CCCAGC 1 cut(s) 538
GsuI CTGGAG 2 cut(s) 566, 615
HaeIII GGCC 1 cut(s) 121
HapII CCGG 2 cut(s) 64, 85
HhaI GCGC 1 cut(s) 241
Hin1II CATG 3 cut(s) 19, 408, 723
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 3 cut(s) 134, 220, 821
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 2 cut(s) 64, 85
Hpy166II GTNNAC 4 cut(s) 364, 424, 508, 529
Hpy188I TCNGA 2 cut(s) 173, 602
Hpy8I GTNNAC 4 cut(s) 364, 424, 508, 529
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 5 cut(s) 97, 124, 382, 598, 745
HpyCH4III ACNGT 5 cut(s) 163, 190, 505, 515, 622
HpyCH4IV ACGT 2 cut(s) 385, 706
HpyCH4V TGCA 6 cut(s) 304, 404, 408, 545, 691, 881
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 2 cut(s) 385, 706
Hsp92II CATG 3 cut(s) 19, 408, 723
HspAI GCGC 1 cut(s) 239
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 4 cut(s) 275, 482, 517, 764
LmnI GCTCC 1 cut(s) 680
Lsp1109I GCAGC 2 cut(s) 862, 865
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 385, 706
MaeIII GTNAC 2 cut(s) 157, 722
MalI GATC 4 cut(s) 277, 484, 519, 766
MboI GATC 4 cut(s) 275, 482, 517, 764
MflI RGATCY 2 cut(s) 482, 764
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 2 cut(s) 376, 455
MlyI GAGTC 3 cut(s) 143, 214, 815
MmeI TCCRAC 3 cut(s) 625, 663, 727
MnlI CCTC 9 cut(s) 35, 81, 84, 120, 143, 214, 564, 590, 646
MseI TTAA 4 cut(s) 453, 500, 528, 840
MspA1I CMGCKG 1 cut(s) 875
MspI CCGG 2 cut(s) 64, 85
MspR9I CCNGG 1 cut(s) 298
MvaI CCWGG 1 cut(s) 298
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 4 cut(s) 275, 482, 517, 764
NlaIII CATG 3 cut(s) 19, 408, 723
NlaIV GGNNCC 1 cut(s) 659
NmeAIII GCCGAG 1 cut(s) 235
NmuCI GTSAC 1 cut(s) 722
NspI RCATGY 1 cut(s) 408
PaeI GCATGC 1 cut(s) 408
PflFI GACNNNGTC 1 cut(s) 860
PkrI GCNGC 2 cut(s) 877, 880
PleI GAGTC 3 cut(s) 142, 214, 815
PpsI GAGTC 3 cut(s) 142, 214, 815
PshAI GACNNNNGTC 1 cut(s) 419
PsiI TTATAA 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 659
PspPI GGNCC 1 cut(s) 119
PstNI CAGNNNCTG 1 cut(s) 878
PsuI RGATCY 2 cut(s) 482, 764
PsyI GACNNNGTC 1 cut(s) 860
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 3 cut(s) 348, 648, 801
RsaNI GTAC 3 cut(s) 347, 647, 800
SaqAI TTAA 4 cut(s) 453, 500, 528, 840
SatI GCNGC 2 cut(s) 876, 879
Sau3AI GATC 4 cut(s) 275, 482, 517, 764
Sau96I GGNCC 1 cut(s) 119
ScaI AGTACT 1 cut(s) 648
SchI GAGTC 3 cut(s) 143, 214, 815
ScrFI CCNGG 1 cut(s) 298
SduI GDGCHC 1 cut(s) 391
SphI GCATGC 1 cut(s) 408
Sse9I AATT 2 cut(s) 376, 455
SsiI CCGC 2 cut(s) 224, 237
SspMI CTAG 1 cut(s) 356
StyD4I CCNGG 1 cut(s) 296
TaaI ACNGT 5 cut(s) 163, 190, 505, 515, 622
TaiI ACGT 2 cut(s) 388, 709
TaqI TCGA 2 cut(s) 30, 101
TaqII GACCGA 1 cut(s) 48
TasI AATT 2 cut(s) 376, 455
TatI WGTACW 2 cut(s) 646, 799
Tru1I TTAA 4 cut(s) 453, 500, 528, 840
Tru9I TTAA 4 cut(s) 453, 500, 528, 840
TscAI CASTG 4 cut(s) 520, 625, 698, 716
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 2 cut(s) 875, 878
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 2 cut(s) 314, 506
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 4 cut(s) 520, 625, 698, 716
Tth111I GACNNNGTC 1 cut(s) 860
XceI RCATGY 1 cut(s) 408
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.