Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009720

Physical Location & Seq

Genomic Coordinates Reverse (-)

69141598 .. 69143035

Gene Structure 1438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG486100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCTCAAGCTCAAAGAAATCTTCGAACACGCCAAGGAACGCTGCCATACTGGCCCATGGAAGGCGTTTCTTTCAATCTCGACTCTTTCTATTCTGCTCTTGAAAAGTACGACTTCAATTCCGAGATTGGAACCAAGTTTCTTTTTGCACTCCACAGAGGTGCACTCTCTTTGTTGGGATACAAATGTGGCTTCGGTCAGTCAAGAGTCTGTCAGAGTGTGGAAACTCTAGAAGCTGAGATCAAGATGCTCAGGAAGAAGCTGACCTTTAAAGCAATTACAATGCCTAACGCTGATCCTCTTTCTAATACCTCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Protein Analysis

106

Amino Acids

12.06

Weight (kDa)

9.47

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009720)

Species	Orthologous Gene IDs
malus_domestica	MD03G1148400.v1.1 MD05G1175700.v1.1 MD10G1012100.v1.1
pyrus_communis	pycom03g10260 pycom05g16230
rosa_chinensis	RchiOBHm_Chr1g0330921 RchiOBHm_Chr1g0356631 RchiOBHm_Chr5g0083671
rosa_laevigata	RLG00000008846
rosa_multiflora	Rmu_sc0000650.1_g000020
rosa_roxburghii	Rroxscaffold_2G00114950 Rroxscaffold_2G00138200 Rroxscaffold_3G00218770 Rroxscaffold_3G00224400 Rroxscaffold_3G00276410 Rroxscaffold_4G00325870 Rroxscaffold_7G00196860
rosa_samantha	Rh1CG247500 Rh2DG367700 Rh3CG314600 Rh7BG472300 Rh7DG486100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	290
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	3 cut(s)	76, 104, 118
AleI	CACNNNNGTG	1 cut(s)	159
AluBI	AGCT	3 cut(s)	11, 236, 262
AluI	AGCT	3 cut(s)	11, 236, 262
Alw21I	GWGCWC	1 cut(s)	166
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	53
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	54
AsuII	TTCGAA	1 cut(s)	25
BaeGI	GKGCMC	1 cut(s)	166
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	230, 315
BfuI	GTATCC	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	52
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	1 cut(s)	251
Bpu14I	TTCGAA	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	34, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	34, 57
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	2 cut(s)	228, 265
BseNI	ACTGG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	30
BshFI	GGCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	62
BsnI	GGCC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	240, 295
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	2 cut(s)	229, 264
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	34, 57
BssMI	GATC	2 cut(s)	240, 295
BssT1I	CCWWGG	2 cut(s)	34, 57
BstBI	TTCGAA	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	237, 251
BstDSI	CCRYGG	1 cut(s)	57
BstKTI	GATC	2 cut(s)	243, 298
BstMBI	GATC	2 cut(s)	240, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	5 cut(s)	11, 55, 192, 236, 262
CviKI_1	RGCY	5 cut(s)	11, 55, 192, 236, 262
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	237, 251
DpnI	GATC	2 cut(s)	242, 297
DpnII	GATC	2 cut(s)	240, 295
DraI	TTTAAA	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	34, 57
EcoT14I	CCWWGG	2 cut(s)	34, 57
ErhI	CCWWGG	2 cut(s)	34, 57
FaeI	CATG	1 cut(s)	61
FaiI	YATR	2 cut(s)	49, 59
FalI	AAGNNNNNCTT	4 cut(s)	98, 130, 251, 283
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	2 cut(s)	230, 315
GluI	GCNGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	2 cut(s)	83, 207
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	124, 216
Hpy188III	TCNNGA	6 cut(s)	80, 101, 204, 230, 244, 253
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	149, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	237, 251
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	240, 295
LpnPI	CCDG	2 cut(s)	37, 238
Lsp1109I	GCAGC	1 cut(s)	30
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	2 cut(s)	230, 315
MalI	GATC	2 cut(s)	242, 297
MboI	GATC	2 cut(s)	240, 295
MboII	GAAGA	2 cut(s)	14, 268
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	118, 276
MlyI	GAGTC	2 cut(s)	77, 216
MnlI	CCTC	3 cut(s)	15, 152, 309
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	240, 295
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	133
NspV	TTCGAA	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	2 cut(s)	77, 215
PpsI	GAGTC	2 cut(s)	77, 215
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	54
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	2 cut(s)	240, 295
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	2 cut(s)	77, 216
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	7 cut(s)	13, 163, 238, 264, 269, 314, 320
SfaNI	GCATC	1 cut(s)	237
SfuI	TTCGAA	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	2 cut(s)	118, 276
SspMI	CTAG	2 cut(s)	230, 315
StyI	CCWWGG	2 cut(s)	34, 57
TaqI	TCGA	2 cut(s)	25, 81
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	2 cut(s)	118, 276
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TseI	GCWGC	1 cut(s)	43
VneI	GTGCAC	1 cut(s)	162
XbaI	TCTAGA	1 cut(s)	229
XspI	CTAG	2 cut(s)	230, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.