Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009720

Physical Location & Seq

Genomic Coordinates Forward (+)

20666930 .. 20667850

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56000

Sequence Viewer

CDS Protein Promoter (2k)

Length: 147 bp

ATGACCTTTTTTTTTTTCTCATGTGACATGAACAATGACATTCGCTTTTGGAGTATTAATCAGTATTCGTGCATTTGTGTTTCTAAGGGAAGTTTAGCACAGGCGAGGTTCCAGCCAAGAATTGGACAATTTATCAATGCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LisH WD40

Protein Analysis

48

Amino Acids

5.63

Weight (kDa)

7.72

Isoelectric Point (pI)

23.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009720)

Species	Orthologous Gene IDs
malus_domestica	MD03G1148400.v1.1 MD05G1175700.v1.1 MD10G1012100.v1.1
pyrus_communis	pycom03g10260 pycom05g16230
rosa_chinensis	RchiOBHm_Chr1g0330921 RchiOBHm_Chr1g0356631 RchiOBHm_Chr5g0083671
rosa_laevigata	RLG00000008846
rosa_multiflora	Rmu_sc0000650.1_g000020
rosa_roxburghii	Rroxscaffold_2G00114950 Rroxscaffold_2G00138200 Rroxscaffold_3G00218770 Rroxscaffold_3G00224400 Rroxscaffold_3G00276410 Rroxscaffold_4G00325870 Rroxscaffold_7G00196860
rosa_samantha	Rh1CG247500 Rh2DG367700 Rh3CG314600 Rh7BG472300 Rh7DG486100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	122
AseI	ATTAAT	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	133
BspLI	GGNNCC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	84, 141
CviAII	CATG	2 cut(s)	21, 28
CviJI	RGCY	1 cut(s)	115
CviKI_1	RGCY	1 cut(s)	115
DdeI	CTNAG	2 cut(s)	84, 141
FaeI	CATG	2 cut(s)	24, 31
FaiI	YATR	2 cut(s)	22, 29
FatI	CATG	2 cut(s)	20, 27
FspEI	CC	9 cut(s)	19, 34, 71, 72, 86, 91, 108, 125, 129
Hin1II	CATG	2 cut(s)	24, 31
HpyCH4V	TGCA	1 cut(s)	72
HpyF3I	CTNAG	2 cut(s)	84, 141
Hsp92II	CATG	2 cut(s)	24, 31
LpnPI	CCDG	2 cut(s)	86, 125
MaeIII	GTNAC	1 cut(s)	23
MluCI	AATT	2 cut(s)	120, 128
MnlI	CCTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	57
NlaIII	CATG	2 cut(s)	24, 31
NlaIV	GGNNCC	1 cut(s)	110
NmuCI	GTSAC	1 cut(s)	23
PflMI	CCANNNNNTGG	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	57
SetI	ASST	2 cut(s)	8, 110
SgeI	CNNG	7 cut(s)	33, 40, 81, 113, 117, 124, 129
Sse9I	AATT	2 cut(s)	120, 128
TasI	AATT	2 cut(s)	120, 128
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	57
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.