Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009720

Physical Location & Seq

Genomic Coordinates Reverse (-)

50982040 .. 50984409

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG247500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGGAGCTAGGCTCTTCGATCTAATCTTGCGGTTCGGATTACCTGGGGCAATGTCTTCCTTGAGTAGGGAACTGGGAAGTTTAGCACAGGCGAGATTCCAGCCAAGAATTGGACAATTTATCGATGCTGAGAGTGATAGACAACACAATATTTTGAACTTATACAGGGCATTCCACAGAGGTGCACTCTCTTTGTTGGGATACAAATGTGGCTTCGGTCAGTCAAGAGAAACTCTAGAAGCAGAGATCAAGATGCTCAGGAAGAAGTTGACCTTTAAAGCAATTACAATGCCTAACGCTGATCCTCCTCCTAATATCTCTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008017 GO:0008092 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009987 GO:0010033 GO:0015631 GO:0032870 GO:0042221 GO:0050896 GO:0051716 GO:0070887 GO:0071310 GO:0071369 GO:0071495

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

108

Amino Acids

12.13

Weight (kDa)

10.34

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009720)

Species	Orthologous Gene IDs
malus_domestica	MD03G1148400.v1.1 MD05G1175700.v1.1 MD10G1012100.v1.1
pyrus_communis	pycom03g10260 pycom05g16230
rosa_chinensis	RchiOBHm_Chr1g0330921 RchiOBHm_Chr1g0356631 RchiOBHm_Chr5g0083671
rosa_laevigata	RLG00000008846
rosa_multiflora	Rmu_sc0000650.1_g000020
rosa_roxburghii	Rroxscaffold_2G00114950 Rroxscaffold_2G00138200 Rroxscaffold_3G00218770 Rroxscaffold_3G00224400 Rroxscaffold_3G00276410 Rroxscaffold_4G00325870 Rroxscaffold_7G00196860
rosa_samantha	Rh1CG247500 Rh2DG367700 Rh3CG314600 Rh7BG472300 Rh7DG486100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	110
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	66, 110
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	43
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw21I	GWGCWC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	296
ApaLI	GTGCAC	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	187
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	194
BfaI	CTAG	3 cut(s)	9, 236, 321
BfuI	GTATCC	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	45
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	115, 243
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	3 cut(s)	29, 171, 203
Bpu10I	CCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	82
Bsa29I	ATCGAT	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 110
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	44
BseLI	CCNNNNNNNGG	2 cut(s)	66, 110
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	120, 271
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	297
BseSI	GKGCMC	1 cut(s)	187
BshVI	ATCGAT	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	187
BslI	CCNNNNNNNGG	2 cut(s)	66, 110
BsmI	GAATGC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	187
Bsp143I	GATC	3 cut(s)	19, 246, 301
BspACI	CCGC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	121, 270
BspDI	ATCGAT	1 cut(s)	123
BspPI	GGATC	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	19, 246, 301
Bst2UI	CCWGG	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	129, 257
BstENI	CCTNNNNNAGG	1 cut(s)	64
BstKTI	GATC	3 cut(s)	22, 249, 304
BstMBI	GATC	3 cut(s)	19, 246, 301
BstNI	CCWGG	1 cut(s)	45
BstSCI	CCNGG	1 cut(s)	43
BstSLI	GKGCMC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	48
Bsu15I	ATCGAT	1 cut(s)	123
BsuI	GTATCC	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	123
ClaI	ATCGAT	1 cut(s)	123
CviJI	RGCY	4 cut(s)	8, 13, 103, 213
CviKI_1	RGCY	4 cut(s)	8, 13, 103, 213
DdeI	CTNAG	2 cut(s)	129, 257
DpnI	GATC	3 cut(s)	21, 248, 303
DpnII	GATC	3 cut(s)	19, 246, 301
DraI	TTTAAA	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	43
FaiI	YATR	1 cut(s)	163
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FspBI	CTAG	3 cut(s)	9, 236, 321
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	1 cut(s)	96
Hpy166II	GTNNAC	2 cut(s)	185, 270
Hpy188I	TCNGA	1 cut(s)	38
Hpy188III	TCNNGA	4 cut(s)	225, 236, 250, 259
Hpy8I	GTNNAC	2 cut(s)	185, 270
HpyCH4V	TGCA	1 cut(s)	185
HpyF3I	CTNAG	2 cut(s)	129, 257
Kzo9I	GATC	3 cut(s)	19, 246, 301
LguI	GCTCTTC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	7 cut(s)	30, 57, 59, 74, 113, 151, 244
LweI	GCATC	2 cut(s)	115, 243
MaeI	CTAG	3 cut(s)	9, 236, 321
MalI	GATC	3 cut(s)	21, 248, 303
MboI	GATC	3 cut(s)	19, 246, 301
MboII	GAAGA	3 cut(s)	7, 48, 274
MhlI	GDGCHC	1 cut(s)	187
MluCI	AATT	3 cut(s)	108, 116, 282
MnlI	CCTC	3 cut(s)	173, 315, 318
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	19, 246, 301
OliI	CACNNNNGTG	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	20
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	96
PflMI	CCANNNNNTGG	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	276
Sau3AI	GATC	3 cut(s)	19, 246, 301
ScrFI	CCNGG	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	187
SetI	ASST	5 cut(s)	10, 46, 184, 275, 326
SfaNI	GCATC	2 cut(s)	115, 243
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	3 cut(s)	108, 116, 282
SsiI	CCGC	1 cut(s)	31
SspI	AATATT	1 cut(s)	151
SspMI	CTAG	3 cut(s)	9, 236, 321
StyD4I	CCNGG	1 cut(s)	43
TaqI	TCGA	2 cut(s)	18, 123
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	3 cut(s)	108, 116, 282
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
Van91I	CCANNNNNTGG	1 cut(s)	110
VneI	GTGCAC	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	64
XbaI	TCTAGA	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	3 cut(s)	9, 236, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.