Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009720

Physical Location & Seq

Genomic Coordinates Forward (+)

40935765 .. 40937483

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008846

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGGAAGAAGTTTCACCATACGAAAGAAGGGAGCCTCCCAGGCTCGGGTCGGAGTGTCCCACACTCTGGAGCATCCCATGCTCTGCTCTTACTCACCCACGAACACATAAGCCCCGAATTGGCCGAAGAAAATTTTCCAGAAAACTCAAGAACCCTAGGATCGGGTTCGATCGATTCGGCCACCACACTGCAAATTGAGAAGCAAGACCTTAGGGAAAATGATCTCCATGAAAAACCCGACCTTCGACGCCGGTCTAGTGACCGGAGAAGGCCGGAATCGCCGGAAATCGGCGAAACTATCAAATCGCATTCGTTACCTTTCCGGCGAGAAATCGAGCTTCTCCGGCCAAATCGTTGCAAAACACCACCGGCAACGTGTCGAGGGGAGGGAGGCGAGCTCGGGGATGGCCGGAACTCGCCGTGGGTCGGCCGGAGGAGGAAGAAATCGGAGGCGCTCCGATTCGGCCGAGAAGGGAAGGAAATCGGGGGAGAGGAGAGAGGGAGACTTACCCGGTTGGGTAGGTTTCCAAAAATAGAAATCTACCAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.78

Weight (kDa)

9.73

Isoelectric Point (pI)

82.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009720)

Species	Orthologous Gene IDs
malus_domestica	MD03G1148400.v1.1 MD05G1175700.v1.1 MD10G1012100.v1.1
pyrus_communis	pycom03g10260 pycom05g16230
rosa_chinensis	RchiOBHm_Chr1g0330921 RchiOBHm_Chr1g0356631 RchiOBHm_Chr5g0083671
rosa_laevigata	RLG00000008846
rosa_multiflora	Rmu_sc0000650.1_g000020
rosa_roxburghii	Rroxscaffold_2G00114950 Rroxscaffold_2G00138200 Rroxscaffold_3G00218770 Rroxscaffold_3G00224400 Rroxscaffold_3G00276410 Rroxscaffold_4G00325870 Rroxscaffold_7G00196860
rosa_samantha	Rh1CG247500 Rh2DG367700 Rh3CG314600 Rh7BG472300 Rh7DG486100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	68
AclWI	GGATC	1 cut(s)	169
AcoI	YGGCCR	6 cut(s)	123, 180, 347, 409, 430, 466
AcsI	RAATTY	1 cut(s)	133
AcyI	GRCGYC	1 cut(s)	250
AfiI	CCNNNNNNNGG	7 cut(s)	46, 47, 68, 121, 163, 290, 428
AflIII	ACRYGT	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	2 cut(s)	340, 400
AluI	AGCT	2 cut(s)	340, 400
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	2 cut(s)	46, 401
AoxI	GGCC	7 cut(s)	123, 180, 272, 347, 409, 430, 466
ApoI	RAATTY	1 cut(s)	133
Asp700I	GAANNNNTTC	1 cut(s)	135
AspA2I	CCTAGG	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	457
AsuC2I	CCSGG	1 cut(s)	514
AsuHPI	GGTGA	2 cut(s)	8, 88
AvaI	CYCGRG	2 cut(s)	46, 401
AvrII	CCTAGG	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	212
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	402
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	2 cut(s)	158, 258
BfoI	RGCGCY	1 cut(s)	458
BglI	GCCNNNNNGGC	1 cut(s)	42
BlnI	CCTAGG	1 cut(s)	157
Bme1390I	CCNGG	2 cut(s)	42, 514
BmeT110I	CYCGRG	2 cut(s)	46, 401
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	2 cut(s)	42, 514
BmsI	GCATC	1 cut(s)	83
BoxI	GACNNNNGTC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	133
BpuMI	CCSGG	1 cut(s)	514
Bsa29I	ATCGAT	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	250
BsaJI	CCNNGG	3 cut(s)	40, 157, 422
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	7 cut(s)	46, 47, 68, 121, 163, 290, 428
Bse118I	RCCGGY	2 cut(s)	252, 370
Bse21I	CCTNAGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	42
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	3 cut(s)	40, 157, 422
BseGI	GGATG	2 cut(s)	74, 412
BseLI	CCNNNNNNNGG	7 cut(s)	46, 47, 68, 121, 163, 290, 428
BseRI	GAGGAG	2 cut(s)	451, 509
BseX3I	CGGCCG	2 cut(s)	430, 466
Bsh1285I	CGRYCG	3 cut(s)	174, 433, 469
BshFI	GGCC	7 cut(s)	125, 182, 274, 349, 411, 432, 468
BshVI	ATCGAT	1 cut(s)	174
BsiEI	CGRYCG	3 cut(s)	174, 433, 469
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	2 cut(s)	46, 401
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	7 cut(s)	46, 47, 68, 121, 163, 290, 428
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	7 cut(s)	125, 182, 274, 349, 411, 432, 468
BsoBI	CYCGRG	2 cut(s)	46, 401
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	3 cut(s)	161, 171, 223
BspANI	GGCC	7 cut(s)	125, 182, 274, 349, 411, 432, 468
BspDI	ATCGAT	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	169
BsrFI	RCCGGY	2 cut(s)	252, 370
BssAI	RCCGGY	2 cut(s)	252, 370
BssECI	CCNNGG	3 cut(s)	40, 157, 422
BssMI	GATC	3 cut(s)	161, 171, 223
BssNI	GRCGYC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	250
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	422
BstF5I	GGATG	2 cut(s)	74, 412
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	3 cut(s)	164, 174, 226
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	3 cut(s)	161, 171, 223
BstMCI	CGRYCG	3 cut(s)	174, 433, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 80, 280, 346
BstNI	CCWGG	1 cut(s)	42
BstPAI	GACNNNNGTC	1 cut(s)	253
BstSCI	CCNGG	2 cut(s)	40, 512
BstZI	CGGCCG	2 cut(s)	430, 466
Bsu15I	ATCGAT	1 cut(s)	174
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	7 cut(s)	125, 182, 274, 349, 411, 432, 468
BsuTUI	ATCGAT	1 cut(s)	174
BtgI	CCRYGG	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	74, 412
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	398
CfoI	GCGC	1 cut(s)	457
Cfr10I	RCCGGY	2 cut(s)	252, 370
ClaI	ATCGAT	1 cut(s)	174
CseI	GACGC	1 cut(s)	258
CviAII	CATG	2 cut(s)	80, 230
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	3 cut(s)	163, 173, 225
DpnII	GATC	3 cut(s)	161, 171, 223
EaeI	YGGCCR	6 cut(s)	123, 180, 347, 409, 430, 466
EagI	CGGCCG	2 cut(s)	430, 466
Ecl136II	GAGCTC	1 cut(s)	400
EclXI	CGGCCG	2 cut(s)	430, 466
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	402
Eco52I	CGGCCG	2 cut(s)	430, 466
Eco53kI	GAGCTC	1 cut(s)	400
Eco81I	CCTNAGG	1 cut(s)	212
Eco88I	CYCGRG	2 cut(s)	46, 401
EcoICRI	GAGCTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	40
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	157
FaeI	CATG	2 cut(s)	83, 233
FaiI	YATR	4 cut(s)	21, 81, 110, 231
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	2 cut(s)	79, 229
FokI	GGATG	2 cut(s)	61, 419
FriOI	GRGCYC	1 cut(s)	402
FspBI	CTAG	2 cut(s)	158, 258
GlaI	GCGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	7 cut(s)	125, 182, 274, 349, 411, 432, 468
HgaI	GACGC	1 cut(s)	258
HhaI	GCGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	83, 233
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HinfI	GANTC	3 cut(s)	176, 278, 462
HphI	GGTGA	2 cut(s)	8, 88
Hpy188I	TCNGA	3 cut(s)	54, 451, 461
Hpy188III	TCNNGA	3 cut(s)	69, 140, 150
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	5 cut(s)	23, 254, 264, 467, 472
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	2 cut(s)	193, 360
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 80, 280, 346
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	83, 233
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	3 cut(s)	161, 171, 223
LmnI	GCTCC	3 cut(s)	33, 71, 462
LweI	GCATC	1 cut(s)	83
MaeI	CTAG	2 cut(s)	158, 258
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	260, 315
MalI	GATC	3 cut(s)	163, 173, 225
MboI	GATC	3 cut(s)	161, 171, 223
MboII	GAAGA	3 cut(s)	19, 140, 454
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	3 cut(s)	119, 133, 195
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	9 cut(s)	47, 377, 382, 386, 429, 432, 445, 487, 494
MroXI	GAANNNNTTC	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	42, 514
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	4 cut(s)	42, 80, 280, 346
NciI	CCSGG	1 cut(s)	514
NdeII	GATC	3 cut(s)	161, 171, 223
NlaIII	CATG	2 cut(s)	83, 233
NlaIV	GGNNCC	1 cut(s)	35
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	260
PctI	GAATGC	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	176, 278, 462
PflMI	CCANNNNNTGG	1 cut(s)	68
Ple19I	CGATCG	1 cut(s)	174
PshAI	GACNNNNGTC	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	35
PvuI	CGATCG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	402
Sau3AI	GATC	3 cut(s)	161, 171, 223
ScrFI	CCNGG	2 cut(s)	42, 514
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	7 cut(s)	213, 246, 322, 342, 380, 402, 527
SfaNI	GCATC	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	119, 133, 195
SspMI	CTAG	2 cut(s)	158, 258
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	40, 512
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	5 cut(s)	170, 174, 247, 336, 382
TasI	AATT	3 cut(s)	119, 133, 195
TfiI	GAWTC	3 cut(s)	176, 278, 462
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	195
Van91I	CCANNNNNTGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	133
XmaJI	CCTAGG	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	2 cut(s)	158, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.