Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0009604

Physical Location & Seq

Genomic Coordinates Reverse (-)

36452116 .. 36458782

Gene Structure 6667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1284300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2952 bp

ATGGAGAATCTCTCGGTGGAGATGGAGATTGGGACATCCGCGGAGTCCTTCGGGAAGTTCTTGGACTCTCAGAGGGAGCTTTTCCACAGCCAGATCGATCAGCTCCAGAGAATTGTCGGCACCCAATGCAAACTCACCGGCGTCAATCCTCTCTCCCAAGAAATGGCAGCTGGTGCTCTTTCAATTAAGATTGGAAAAAGACCTAGAGATTTGTTAAATCCAAAGGCTATAAAGTATATGCAATCTATTTTTTCGATTAAAGATACGATTAGTAAGAAGGAATCTCGGGAGCTCAGTGCTCTATTCGGCGTTACAGTCACACAGGTTCGTGATTTCTTTAACAGTCAACGGTCGAGAGTCAAAAAACTAGTCCAGTTGTCAAGGGAAAAGGCCTTGAAATCCGGTGAACATGAAGATTTGCGGGATGGGGTCTCAACAAGCCCTGATTCTTTGATTCCAAGTGATCCAGTTCCCTTGAACTCTGTTGGTCCCTCCACTGTTGACGACGCACCATCATGCTCAACGCAAGATAATGCTCTTTCTGGATTAGACGACTTAGATAAACGTTTCGTAGAAGATATTTTCAACTTGATGCGGAAAGAAGAAACATTTTCTGGGCAAGTGAAACTGATGGAGTGGATTATGCGGATACAAAATTCTTCAGTATTATGTTGGTTTTTAACTAATGGTGGTGTAATTATTTTAGTAACATGGTTGAGTGAAGCTGCTGTCGAAGAACAAACAAGTGTTCTACTTGTTATCTTAAAGGTTCTTTGTCATTTGCCTCTTCATAAAGCTCTTCCTTTGCATATGTCAGCCGTACTGCAAAGTGTTAATCGACTGCGGTTTTACAGGACACCAGACATATCAAACAGGGCAAGAGTTTTGCTATCAAGGTGGAGCAAGCTATTAGCGAGAAGCCAAGCTATGAAGAAACCAAATGGCATTAAAACATCTAGCGATTCGGAAGAGTTAGTAATTCTGAAGCAGAGTATCGATGAAGTTATGGGCGATTCAGAATCATGGAAGTCAAATATGGATATTTCTGAAGACATCCTTGGAACACATTTTGAAAGTGCAGAAACCAGGAAATTAGAGGCGTCAGAACCCTTGAAGTTATTGACAGCATCACCAGATGAGTCAAATAAGAAGAACATCTTGGGTGTATCTTCATCTCAATTTCGTGAGCGCAGAAAAGTTCAGTTGGTGGAACAGCCTGGCCAATCAGCTGGGAGAAGTGTACCGGCCACAAGGACAACAACTGTGAGTCAGGCTCGTCCAATGTCTGCTGATGATATCCAAAAAGCAAAAATGCGAGCACAATTTATGCAGAGCAAGTATGGGAAATCTCGTTCATCCCATGAAAATAAAGAATTGAAGACTGAAGGTGTGGACAAACTTACAATCTCTCAGGCAAGCATTTTGCCCGTGGTACCCAAAGTTCCAATTCGGTCTAATATTGAGGAACCGAAGAAACCTGCGACATATCCTTTGAAAGAGAGGGAAGTTCCTAATAAGCCCGAAACTTCTCTTGCCCCAAAGCGGAGTCTGGATTTGAAGGAGCCCATATTAGAGAAGTGCCAGAGAATCCAGATCCCATGGAAGATGCCTCCAGAAATAAAATTCGATCCCTCGTGGAGCGTTGGTGGTGGTGAATATTGCAAAGAAATCGAAGTCCAGAGAAACAGAAACCGCCGTGAGAAGGAAACCATCTACCGGACAGTTCAGGAGATACCGTCTAACCCGAAGGAACCATGGGACATTGAAATGGATTATGATGATTCATTAACACCAGAAATACCAATAGAACAACCGCCTGATGTTGCTGATACCACTGAAACACAGGCTTCCCATAACAGAGAAGTACATAATGCAGAAACAATGGTCGTTCCTTCTCAAGGAGCAAACAGTGTCGCTTCGTTTCCACCGGCCTTATCTCAAATTAATAATGCTAGCGCAGCTGAACCGGATCTAGAACTGCTTGCCGTACTGCTAAAAAATCCAGAACTGGTGTTTGCTTTGACTTCTGGCGATGCTGCTAACTTGTCGAGCGAGGACACAGTAAAATTGCTGGATATGATAAAGTCTGGTGGGGTTGGTGGGGTTGGTGTTGCTGGTAATGTAAATGGTTTAGGTAGAAAAATGGAGGAGAGGGTCGAAGTTTCTCTTCCATCCCCGACGCCTTCAAGCAACCCTGGAACGAGTGGATGGAAAGGAGATGCTGGAAGGAATGCATTTCCCCAACGGATGCCGCAGGTTTCATCTGCTCATCACATTATTCCGCCGCAACGGCTATCAACTTCCCAACCGGCAGTACCTTCATACTCACCAGATTATCATCGTATGCAATCACCAGCCTCAGAGATGGCTTTAACCATGAAGGACACGCATTTCCACAACGTATCAAACACGGCCGTGCCTTCAGTTTGGGGTGAAAGCACGATCAATCACGAACAAGCTCCCCTATCTAACTCTTATAATGTAGCAGAACGGCAGCAGCCCTTGTATTCCACTCCGGCAAGGCAACAAAGACAGCCGCAGCCAGTACAACAATCCCGTTTTTCTGAACCTCACATTCCTATGTACACGCCTAAACAGCCGATGGGAAAACCCGGCCCTCCATCAGATTCGTGGAGAGCCGGGCAGGATTTGCCTTCAAAGTACCATTACATAGAGAACCAAAATCAGTATAATGCATCTTCTGGAGGGCATTTGCAGCCTCACCTGTTGTCAGGTCCTTCTTGGGAAGGAAATGAACATGTTGGCGGCAACCAAGATTTCCAATCGTGGAGCCCGGATAATAGTCCGCGTAGAAATCCCGGGTATATGTACGGAAGAGAACACAGAACAAACCCGGGACAGGATTACAGGTCGAGGGGAAGGAATCCTGCCGGATACCGGGACCATAATAGGCAGCAGGGAAACAGATGGCCTAATCGCGGCGGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

984

Amino Acids

109.54

Weight (kDa)

8.24

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02560 AT4G02560
fragaria_vesca	FvH4_2g25100 FvH4_2g25100 FvH4_2g25100
malus_domestica	MD03G1284300.v1.1 MD11G1302000.v1.1
prunus_persica	Prupe.8G255600_v2.0.a1 Prupe.8G255600_v2.0.a1
pyrus_communis	pycom03g22510 pycom11g26460
rosa_chinensis	RchiOBHm_Chr6g0293161
rosa_laevigata	RLG00000011970
rosa_multiflora	Rmu_sc0014786.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174400
rosa_rugosa	Rorug06G0233000 Rorug06G0233100
rosa_samantha	Rh6AG345700 Rh6BG353500 Rh6CG359900 Rh6DG346300
rosa_wichuraiana	Rw6G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2478
Acc36I	ACCTGC	2 cut(s)	1486, 2245
Acc65I	GGTACC	1 cut(s)	1432
AccB1I	GGYRCC	2 cut(s)	119, 1432
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccII	CGCG	3 cut(s)	41, 2809, 2940
AclI	AACGTT	1 cut(s)	565
AclWI	GGATC	4 cut(s)	458, 1588, 1622, 1977
AcoI	YGGCCR	3 cut(s)	1219, 1245, 2412
AcsI	RAATTY	2 cut(s)	655, 1622
AcuI	CTGAAG	5 cut(s)	645, 1004, 1068, 1404, 2406
AcyI	GRCGYC	3 cut(s)	141, 1100, 2180
AfiI	CCNNNNNNNGG	8 cut(s)	163, 1542, 1702, 1716, 1898, 2860, 2898, 2939
AflIII	ACRYGT	1 cut(s)	2758
AhlI	ACTAGT	1 cut(s)	367
AjnI	CCWGG	3 cut(s)	1085, 1216, 2194
AjuI	GAANNNNNNNTTGG	4 cut(s)	1041, 1073, 1142, 1174
AleI	CACNNNNGTG	1 cut(s)	2414
AloI	GAACNNNNNNTCC	2 cut(s)	1336, 1368
Alw21I	GWGCWC	4 cut(s)	178, 294, 301, 1321
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	4 cut(s)	458, 1588, 1622, 1977
Ama87I	CYCGRG	3 cut(s)	285, 2819, 2854
AoxI	GGCC	7 cut(s)	390, 1219, 1245, 1929, 2412, 2614, 2930
ApeKI	GCWGC	9 cut(s)	167, 725, 1958, 2036, 2494, 2497, 2539, 2716, 2914
ApoI	RAATTY	2 cut(s)	655, 1622
ArsI	GACNNNNNNTTYG	4 cut(s)	354, 386, 1474, 1506
AseI	ATTAAT	1 cut(s)	1944
Asp718I	GGTACC	1 cut(s)	1432
AspLEI	GCGC	2 cut(s)	1191, 1958
AspS9I	GGNCC	4 cut(s)	488, 2615, 2735, 2902
AsuC2I	CCSGG	8 cut(s)	2613, 2641, 2795, 2820, 2821, 2855, 2856, 2900
AsuHPI	GGTGA	8 cut(s)	127, 416, 1122, 1664, 2319, 2343, 2444, 2714
AsuNHI	GCTAGC	1 cut(s)	1952
AvaI	CYCGRG	3 cut(s)	285, 2819, 2854
AvaII	GGWCC	3 cut(s)	488, 2735, 2902
BalI	TGGCCA	1 cut(s)	1221
BanI	GGYRCC	2 cut(s)	119, 1432
BanII	GRGCYC	3 cut(s)	294, 1566, 2795
BauI	CACGAG	1 cut(s)	1633
BbsI	GAAGAC	2 cut(s)	1056, 1385
Bbv12I	GWGCWC	4 cut(s)	178, 294, 301, 1321
BbvI	GCAGC	9 cut(s)	179, 712, 1970, 2023, 2506, 2509, 2551, 2728, 2926
BceAI	ACGGC	7 cut(s)	803, 1680, 1970, 2306, 2399, 2427, 2507
BcgI	CGANNNNNNTGC	2 cut(s)	1651, 1685
BciT130I	CCWGG	3 cut(s)	1087, 1218, 2196
BciVI	GTATCC	2 cut(s)	642, 2888
BcnI	CCSGG	8 cut(s)	2613, 2641, 2795, 2820, 2821, 2855, 2856, 2900
BcoDI	GTCTC	1 cut(s)	436
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	5 cut(s)	204, 368, 957, 1953, 1973
BfuAI	ACCTGC	2 cut(s)	1486, 2245
BfuI	GTATCC	2 cut(s)	642, 2888
BglI	GCCNNNNNGGC	1 cut(s)	2290
Bme18I	GGWCC	3 cut(s)	488, 2735, 2902
BmeT110I	CYCGRG	3 cut(s)	285, 2819, 2854
BmgT120I	GGNCC	4 cut(s)	488, 2615, 2735, 2902
BmiI	GGNNCC	8 cut(s)	121, 490, 1434, 1467, 1563, 1752, 2792, 2903
BmsI	GCATC	7 cut(s)	582, 1136, 1596, 2023, 2209, 2238, 2705
BmtI	GCTAGC	1 cut(s)	1956
BpiI	GAAGAC	2 cut(s)	1056, 1385
BplI	GAGNNNNNCTC	3 cut(s)	28, 1258, 1290
BpmI	CTGGAG	3 cut(s)	89, 1596, 2724
BpuEI	CTTGAG	1 cut(s)	1881
BpuMI	CCSGG	8 cut(s)	2613, 2641, 2795, 2820, 2821, 2855, 2856, 2900
Bsa29I	ATCGAT	2 cut(s)	96, 996
BsaBI	GATNNNNATC	1 cut(s)	2337
BsaHI	GRCGYC	3 cut(s)	141, 1100, 2180
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	8 cut(s)	39, 1057, 1428, 1598, 1754, 2194, 2819, 2854
BsaWI	WCCGGW	3 cut(s)	401, 1716, 1966
BsaXI	ACNNNNNCTCC	4 cut(s)	1630, 1660, 1721, 1751
Bsc4I	CCNNNNNNNGG	8 cut(s)	163, 1542, 1702, 1716, 1898, 2860, 2898, 2939
Bse118I	RCCGGY	4 cut(s)	137, 1243, 1927, 2308
Bse1I	ACTGG	4 cut(s)	373, 467, 2013, 2543
Bse8I	GATNNNNATC	1 cut(s)	2337
BseBI	CCWGG	3 cut(s)	1087, 1218, 2196
BseCI	ATCGAT	2 cut(s)	96, 996
BseDI	CCNNGG	8 cut(s)	39, 1057, 1428, 1598, 1754, 2194, 2819, 2854
BseGI	GGATG	7 cut(s)	35, 430, 1053, 1355, 2171, 2213, 2253
BseJI	GATNNNNATC	1 cut(s)	2337
BseLI	CCNNNNNNNGG	8 cut(s)	163, 1542, 1702, 1716, 1898, 2860, 2898, 2939
BseMII	CTCAG	4 cut(s)	83, 307, 1424, 2373
BseNI	ACTGG	4 cut(s)	373, 467, 2013, 2543
BseRI	GAGGAG	1 cut(s)	2162
BseX3I	CGGCCG	1 cut(s)	2412
BseXI	GCAGC	9 cut(s)	179, 712, 1970, 2023, 2506, 2509, 2551, 2728, 2926
BseYI	CCCAGC	1 cut(s)	1229
BsgI	GTGCAG	1 cut(s)	1098
Bsh1236I	CGCG	3 cut(s)	41, 2809, 2940
Bsh1285I	CGRYCG	2 cut(s)	353, 2415
BshFI	GGCC	7 cut(s)	392, 1221, 1247, 1931, 2414, 2616, 2932
BshNI	GGYRCC	2 cut(s)	119, 1432
BshVI	ATCGAT	2 cut(s)	96, 996
BsiEI	CGRYCG	2 cut(s)	353, 2415
BsiHKAI	GWGCWC	4 cut(s)	178, 294, 301, 1321
BsiHKCI	CYCGRG	3 cut(s)	285, 2819, 2854
BslFI	GGGAC	5 cut(s)	46, 474, 1772, 2871, 2915
BslI	CCNNNNNNNGG	8 cut(s)	163, 1542, 1702, 1716, 1898, 2860, 2898, 2939
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	5 cut(s)	46, 474, 1772, 2871, 2915
BsmI	GAATGC	1 cut(s)	2236
BsnI	GGCC	7 cut(s)	392, 1221, 1247, 1931, 2414, 2616, 2932
Bso31I	GGTCTC	1 cut(s)	436
BsoBI	CYCGRG	3 cut(s)	285, 2819, 2854
Bsp1286I	GDGCHC	6 cut(s)	178, 294, 301, 1321, 1566, 2795
Bsp1407I	TGTACA	1 cut(s)	2583
Bsp143I	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2442
Bsp19I	CCATGG	2 cut(s)	1598, 1754
BspANI	GGCC	7 cut(s)	392, 1221, 1247, 1931, 2414, 2616, 2932
BspCNI	CTCAG	4 cut(s)	82, 306, 1423, 2372
BspDI	ATCGAT	2 cut(s)	96, 996
BspFNI	CGCG	3 cut(s)	41, 2809, 2940
BspLI	GGNNCC	8 cut(s)	121, 490, 1434, 1467, 1563, 1752, 2792, 2903
BspMI	ACCTGC	2 cut(s)	1486, 2245
BspOI	GCTAGC	1 cut(s)	1956
BspPI	GGATC	4 cut(s)	458, 1588, 1622, 1977
BspQI	GCTCTTC	1 cut(s)	804
BspT107I	GGYRCC	2 cut(s)	119, 1432
BspTNI	GGTCTC	1 cut(s)	436
BsrFI	RCCGGY	4 cut(s)	137, 1243, 1927, 2308
BsrGI	TGTACA	1 cut(s)	2583
BsrI	ACTGG	4 cut(s)	373, 467, 2013, 2543
BssAI	RCCGGY	4 cut(s)	137, 1243, 1927, 2308
BssECI	CCNNGG	8 cut(s)	39, 1057, 1428, 1598, 1754, 2194, 2819, 2854
BssMI	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2442
BssNI	GRCGYC	3 cut(s)	141, 1100, 2180
BssSI	CACGAG	1 cut(s)	1633
BssT1I	CCWWGG	3 cut(s)	1057, 1598, 1754
Bst2BI	CACGAG	1 cut(s)	1633
Bst2UI	CCWGG	3 cut(s)	1087, 1218, 2196
Bst4CI	ACNGT	9 cut(s)	316, 344, 351, 499, 1264, 1723, 1737, 1910, 2062
Bst6I	CTCTTC	5 cut(s)	792, 804, 963, 2172, 2830
BstACI	GRCGYC	3 cut(s)	141, 1100, 2180
BstAPI	GCANNNNNTGC	3 cut(s)	126, 173, 2650
BstAUI	TGTACA	1 cut(s)	2583
BstC8I	GCNNGC	5 cut(s)	905, 1317, 1417, 1954, 1983
BstDEI	CTNAG	5 cut(s)	69, 293, 556, 1410, 2359
BstDSI	CCRYGG	4 cut(s)	39, 1428, 1598, 1754
BstENI	CCTNNNNNAGG	1 cut(s)	1896
BstF5I	GGATG	7 cut(s)	35, 430, 1053, 1355, 2171, 2213, 2253
BstFNI	CGCG	3 cut(s)	41, 2809, 2940
BstHHI	GCGC	2 cut(s)	1191, 1958
BstKTI	GATC	7 cut(s)	96, 100, 466, 1596, 1630, 1972, 2445
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2442
BstMCI	CGRYCG	2 cut(s)	353, 2415
BstMWI	GCNNNNNNNGC	8 cut(s)	126, 173, 1958, 2290, 2596, 2650, 2716, 2946
BstNI	CCWGG	3 cut(s)	1087, 1218, 2196
BstNSI	RCATGY	1 cut(s)	2762
BstUI	CGCG	3 cut(s)	41, 2809, 2940
BstV1I	GCAGC	9 cut(s)	179, 712, 1970, 2023, 2506, 2509, 2551, 2728, 2926
BstV2I	GAAGAC	2 cut(s)	1056, 1385
BstX2I	RGATCY	2 cut(s)	1593, 1969
BstXI	CCANNNNNNTGG	1 cut(s)	1229
BstYI	RGATCY	2 cut(s)	1593, 1969
BstZI	CGGCCG	1 cut(s)	2412
Bsu15I	ATCGAT	2 cut(s)	96, 996
BsuI	GTATCC	2 cut(s)	642, 2888
BsuRI	GGCC	7 cut(s)	392, 1221, 1247, 1931, 2414, 2616, 2932
BsuTUI	ATCGAT	2 cut(s)	96, 996
BtgI	CCRYGG	4 cut(s)	39, 1428, 1598, 1754
BtgZI	GCGATG	1 cut(s)	2046
BtsCI	GGATG	7 cut(s)	35, 430, 1053, 1355, 2171, 2213, 2253
BtsIMutI	CAGTG	4 cut(s)	301, 495, 1833, 1915
BveI	ACCTGC	2 cut(s)	1486, 2245
Cac8I	GCNNGC	5 cut(s)	905, 1317, 1417, 1954, 1983
CfoI	GCGC	2 cut(s)	1191, 1958
Cfr10I	RCCGGY	4 cut(s)	137, 1243, 1927, 2308
Cfr13I	GGNCC	4 cut(s)	488, 2615, 2735, 2902
Cfr42I	CCGCGG	1 cut(s)	42
Cfr9I	CCCGGG	2 cut(s)	2819, 2854
ClaI	ATCGAT	2 cut(s)	96, 996
CseI	GACGC	4 cut(s)	130, 515, 1089, 2188
CviAII	CATG	9 cut(s)	410, 516, 711, 1023, 1361, 1599, 1755, 2377, 2759
DdeI	CTNAG	5 cut(s)	69, 293, 556, 1410, 2359
DpnI	GATC	7 cut(s)	95, 99, 465, 1595, 1629, 1971, 2444
DpnII	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2442
EaeI	YGGCCR	3 cut(s)	1219, 1245, 2412
EagI	CGGCCG	1 cut(s)	2412
Eam1104I	CTCTTC	5 cut(s)	792, 804, 963, 2172, 2830
EarI	CTCTTC	5 cut(s)	792, 804, 963, 2172, 2830
EciI	GGCGGA	1 cut(s)	2271
Ecl136II	GAGCTC	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	2412
Eco130I	CCWWGG	3 cut(s)	1057, 1598, 1754
Eco147I	AGGCCT	1 cut(s)	392
Eco24I	GRGCYC	3 cut(s)	294, 1566, 2795
Eco31I	GGTCTC	1 cut(s)	436
Eco32I	GATATC	1 cut(s)	1297
Eco47I	GGWCC	3 cut(s)	488, 2735, 2902
Eco52I	CGGCCG	1 cut(s)	2412
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	5 cut(s)	645, 1004, 1068, 1404, 2406
Eco88I	CYCGRG	3 cut(s)	285, 2819, 2854
EcoICRI	GAGCTC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	1896
EcoO109I	RGGNCCY	1 cut(s)	2735
EcoRII	CCWGG	3 cut(s)	1085, 1216, 2194
EcoRV	GATATC	1 cut(s)	1297
EcoT14I	CCWWGG	3 cut(s)	1057, 1598, 1754
EcoT22I	ATGCAT	2 cut(s)	2236, 2698
EcoT38I	GRGCYC	3 cut(s)	294, 1566, 2795
ErhI	CCWWGG	3 cut(s)	1057, 1598, 1754
FaeI	CATG	9 cut(s)	413, 519, 714, 1026, 1364, 1602, 1758, 2380, 2762
FalI	AAGNNNNNCTT	6 cut(s)	1041, 1073, 1142, 1174, 2151, 2183
FaqI	GGGAC	5 cut(s)	46, 474, 1772, 2871, 2915
FatI	CATG	9 cut(s)	409, 515, 710, 1022, 1360, 1598, 1754, 2376, 2758
FauI	CCCGC	1 cut(s)	414
FauNDI	CATATG	1 cut(s)	810
FokI	GGATG	7 cut(s)	22, 437, 1040, 1342, 2158, 2220, 2260
FriOI	GRGCYC	3 cut(s)	294, 1566, 2795
FspBI	CTAG	5 cut(s)	204, 368, 957, 1953, 1973
GlaI	GCGC	2 cut(s)	1190, 1957
GsaI	CCCAGC	1 cut(s)	1233
GsuI	CTGGAG	3 cut(s)	89, 1596, 2724
HaeIII	GGCC	7 cut(s)	392, 1221, 1247, 1931, 2414, 2616, 2932
HgaI	GACGC	4 cut(s)	130, 515, 1089, 2188
HhaI	GCGC	2 cut(s)	1191, 1958
Hin1I	GRCGYC	3 cut(s)	141, 1100, 2180
Hin1II	CATG	9 cut(s)	413, 519, 714, 1026, 1364, 1602, 1758, 2380, 2762
Hin6I	GCGC	2 cut(s)	1189, 1956
HinP1I	GCGC	2 cut(s)	1189, 1956
HincII	GTYRAC	2 cut(s)	347, 502
HindII	GTYRAC	2 cut(s)	347, 502
HphI	GGTGA	8 cut(s)	127, 416, 1122, 1664, 2319, 2343, 2444, 2714
Hpy166II	GTNNAC	6 cut(s)	347, 407, 502, 1241, 1393, 2586
Hpy188I	TCNGA	9 cut(s)	72, 967, 984, 1018, 1048, 1105, 2362, 2566, 2626
Hpy8I	GTNNAC	6 cut(s)	347, 407, 502, 1241, 1393, 2586
Hpy99I	CGWCG	2 cut(s)	509, 2182
HpyCH4III	ACNGT	9 cut(s)	316, 344, 351, 499, 1264, 1723, 1737, 1910, 2062
HpyCH4IV	ACGT	2 cut(s)	565, 2400
HpyF10VI	GCNNNNNNNGC	8 cut(s)	126, 173, 1958, 2290, 2596, 2650, 2716, 2946
HpyF3I	CTNAG	5 cut(s)	69, 293, 556, 1410, 2359
HpySE526I	ACGT	2 cut(s)	565, 2400
Hsp92I	GRCGYC	3 cut(s)	141, 1100, 2180
Hsp92II	CATG	9 cut(s)	413, 519, 714, 1026, 1364, 1602, 1758, 2380, 2762
HspAI	GCGC	2 cut(s)	1189, 1956
KpnI	GGTACC	1 cut(s)	1436
KspI	CCGCGG	1 cut(s)	42
Kzo9I	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2442
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	9 cut(s)	76, 108, 289, 900, 1561, 1638, 1901, 2464, 2790
Lsp1109I	GCAGC	9 cut(s)	179, 712, 1970, 2023, 2506, 2509, 2551, 2728, 2926
LweI	GCATC	7 cut(s)	582, 1136, 1596, 2023, 2209, 2238, 2705
MaeI	CTAG	5 cut(s)	204, 368, 957, 1953, 1973
MaeII	ACGT	2 cut(s)	565, 2400
MaeIII	GTNAC	3 cut(s)	310, 316, 706
MalI	GATC	7 cut(s)	95, 99, 465, 1595, 1629, 1971, 2444
MboI	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2442
MflI	RGATCY	2 cut(s)	1593, 1969
MhlI	GDGCHC	6 cut(s)	178, 294, 301, 1321, 1566, 2795
MlsI	TGGCCA	1 cut(s)	1221
MluNI	TGGCCA	1 cut(s)	1221
MlyI	GAGTC	6 cut(s)	53, 59, 366, 1148, 1276, 1555
Mox20I	TGGCCA	1 cut(s)	1221
Mph1103I	ATGCAT	2 cut(s)	2236, 2698
MscI	TGGCCA	1 cut(s)	1221
MslI	CAYNNNNRTG	4 cut(s)	514, 1766, 2414, 2579
Msp20I	TGGCCA	1 cut(s)	1221
MspA1I	CMGCKG	4 cut(s)	41, 170, 1229, 1961
Mva1269I	GAATGC	1 cut(s)	2236
MvaI	CCWGG	3 cut(s)	1087, 1218, 2196
MvnI	CGCG	3 cut(s)	41, 2809, 2940
MwoI	GCNNNNNNNGC	8 cut(s)	126, 173, 1958, 2290, 2596, 2650, 2716, 2946
NciI	CCSGG	8 cut(s)	2613, 2641, 2795, 2820, 2821, 2855, 2856, 2900
NcoI	CCATGG	2 cut(s)	1598, 1754
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2442
NheI	GCTAGC	1 cut(s)	1952
NlaIII	CATG	9 cut(s)	413, 519, 714, 1026, 1364, 1602, 1758, 2380, 2762
NlaIV	GGNNCC	8 cut(s)	121, 490, 1434, 1467, 1563, 1752, 2792, 2903
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	2 cut(s)	2236, 2698
NspI	RCATGY	1 cut(s)	2762
OliI	CACNNNNGTG	1 cut(s)	2414
PceI	AGGCCT	1 cut(s)	392
PciI	ACATGT	1 cut(s)	2758
PciSI	GCTCTTC	1 cut(s)	804
PctI	GAATGC	1 cut(s)	2236
PflMI	CCANNNNNTGG	1 cut(s)	163
PleI	GAGTC	6 cut(s)	52, 59, 365, 1147, 1275, 1554
PpsI	GAGTC	6 cut(s)	52, 59, 365, 1147, 1275, 1554
PpuMI	RGGWCCY	1 cut(s)	2735
PscI	ACATGT	1 cut(s)	2758
PshBI	ATTAAT	1 cut(s)	1944
PsiI	TTATAA	1 cut(s)	2478
Psp124BI	GAGCTC	1 cut(s)	294
Psp1406I	AACGTT	1 cut(s)	565
Psp5II	RGGWCCY	1 cut(s)	2735
Psp6I	CCWGG	3 cut(s)	1085, 1216, 2194
PspFI	CCCAGC	1 cut(s)	1229
PspGI	CCWGG	3 cut(s)	1085, 1216, 2194
PspN4I	GGNNCC	8 cut(s)	121, 490, 1434, 1467, 1563, 1752, 2792, 2903
PspPI	GGNCC	4 cut(s)	488, 2615, 2735, 2902
PspPPI	RGGWCCY	1 cut(s)	2735
PsrI	GAACNNNNNNTAC	2 cut(s)	1425, 1457
PsuI	RGATCY	2 cut(s)	1593, 1969
PvuII	CAGCTG	3 cut(s)	170, 1229, 1961
RseI	CAYNNNNRTG	4 cut(s)	514, 1766, 2414, 2579
SacI	GAGCTC	1 cut(s)	294
SacII	CCGCGG	1 cut(s)	42
SapI	GCTCTTC	1 cut(s)	804
Sau3AI	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2442
Sau96I	GGNCC	4 cut(s)	488, 2615, 2735, 2902
SchI	GAGTC	6 cut(s)	53, 59, 366, 1148, 1276, 1555
SduI	GDGCHC	6 cut(s)	178, 294, 301, 1321, 1566, 2795
SfaNI	GCATC	7 cut(s)	582, 1136, 1596, 2023, 2209, 2238, 2705
Sfr303I	CCGCGG	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	137
SgrBI	CCGCGG	1 cut(s)	42
SinI	GGWCC	3 cut(s)	488, 2735, 2902
SmaI	CCCGGG	2 cut(s)	2821, 2856
SmiMI	CAYNNNNRTG	4 cut(s)	514, 1766, 2414, 2579
SmlI	CTYRAG	1 cut(s)	1896
SmoI	CTYRAG	1 cut(s)	1896
SpeI	ACTAGT	1 cut(s)	367
SseBI	AGGCCT	1 cut(s)	392
SspI	AATATT	2 cut(s)	1459, 1658
SspMI	CTAG	5 cut(s)	204, 368, 957, 1953, 1973
SstI	GAGCTC	1 cut(s)	294
StuI	AGGCCT	1 cut(s)	392
StyI	CCWWGG	3 cut(s)	1057, 1598, 1754
TaaI	ACNGT	9 cut(s)	316, 344, 351, 499, 1264, 1723, 1737, 1910, 2062
TaiI	ACGT	2 cut(s)	568, 2403
TaqII	GACCGA	1 cut(s)	1440
TatI	WGTACW	3 cut(s)	1864, 2545, 2583
TauI	GCSGC	5 cut(s)	2254, 2287, 2539, 2769, 2943
TscAI	CASTG	4 cut(s)	301, 502, 1840, 1915
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	9 cut(s)	167, 725, 1958, 2036, 2494, 2497, 2539, 2716, 2914
Tsp45I	GTSAC	1 cut(s)	316
TspGWI	ACGGA	2 cut(s)	2260, 2847
TspMI	CCCGGG	2 cut(s)	2819, 2854
TspRI	CASTG	4 cut(s)	301, 502, 1840, 1915
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	3 cut(s)	488, 2735, 2902
VspI	ATTAAT	1 cut(s)	1944
XagI	CCTNNNNNAGG	1 cut(s)	1896
XapI	RAATTY	2 cut(s)	655, 1622
XbaI	TCTAGA	1 cut(s)	1972
XceI	RCATGY	1 cut(s)	2762
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2628
XmaI	CCCGGG	2 cut(s)	2819, 2854
XspI	CTAG	5 cut(s)	204, 368, 957, 1953, 1973
Zsp2I	ATGCAT	2 cut(s)	2236, 2698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.