Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0009604

Physical Location & Seq

Genomic Coordinates Reverse (-)

58428347 .. 58435892

Gene Structure 7546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG353500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3069 bp

ATGGAGGATCTCTCTGAGCTAAAGATTGGGAATTCCGTCGAGTCCTTCCACAAGTTCGTCGACTCGCAGAGGGAGCTCTTCCACCGCCAGATCGATGAGCTCCAGAAAATCGTCGTCACCCAATGCAAGCTCACAGGCGCCAATCCTCTCTCCCAAGAGATGGCAGCTGGTGCTCTTTCTATTAATATTGGAAAAAGACCTAGAGATTTGTTAAATCCAAAGGCTATCAAGTATATGCAATCCGTTTTTTCTATTAAAGATGCGATTACGAAGAAGGAATCTCGGGAGATCAGTGCGCTGTTCGGGGTTTCTGTCTCACAGGTTCGTGATTTTTTTAATAGTCAACGATCCAGAGTTAGAAAAATAGTTCAGTTGTCAAGGGAGAAGGCCATCAGATCCACTGAACAGAAAGAATTGCTGGAGGTGGTGCCGACAAGCTCTGATCCATTGATACCAATTAATCCCCTTCCTTTAAACACTATTGATCCGTCCAATGTTGAGGATGCACCATCTTGCTCAACACAAGATGATACTCTTTCTGGACTAGATGACGTTGATAAACATTTTGTTGAAAATATTTTCAACTTGATGCGGAAAGAAGAAACATTTTCTGGGCAAGTGAAAGTGTTAGAGTTGATATTGCGGATACAAAATTCTTCAGTATTATGCTGGTTTTTATCTAAAGGTGGCGTGATGATTTTAGTAACATGGTTGACACAAGCAGCTGATGAAGAACAAACGAGTGTTCTGCTTGTCATCTTAAAGGTTCTTTGCCATTTGCCTCTATCCAAAGCTCTTCCTGTTCATATGTCAGCCATACTGCAAAGTGTTAATAGACTGCGGTTTTACAGGACATCAGAAATATCAAACAGGGCAAGGGTTTTGTTATCAAGATGGAGCAAGTCTTTAGCAAGAAGCCAAGCTTTGAAGAAACCAAATGGCATGAAAACATCTAATGATTCACAAGAATTAGCATTGCTGAAGCGAAGTATTGATGAAGCTATAGGCGATGATCCATGGAATTCAAATGGTGATGTTAACGAAGACATCCTTGCATTGCCATTTGAAAGTGCAGATAAATTAAGGAAATCGGAGTCTTCAGAACCAATGAAGCTATTGACAGCATCATCAGATGATTCTAATAAGAAACACATCCTAGGTGTATCTTCATCCCAATTTAGAGGACGCAGAAAAGTTCAATTGGTGGAACAGCCCGGCCAAAAAACAGCGGGGAGAAGTTCACAGGTTGCAAAAACTACACCTGTCAGTCAGGCTCGCCCAATGTCTGTTGATGATATCCAAAAAGCAAAATTGCGAGCACAATATATGCAGAGCAAGTATGGAAAGTCTGCTTCCTCTAATGAAAATAAAGAAGTGAAGGCTGAAGGCATGAACAAACCTCCAATCGCTCAGGCCAGCATTTTACCTGTAGTACCTAATGTTCCAGTTCGGTCTAGTATTGAGGAATCCAAGAAACCTGTGACACTTCCTTTGAAAGAGAGGGAAACTCCTGATATAAGTTTACAGCCTATTGGGAGTTTCCAGACTATTGCTCCAAAGCTGAAAACGGATATGAAGGAGCACATCTGGGAGAAGTGCAGGAGAGTCCAGGTGCCGTGGAAGACACCACCAGAAATAAAACTTAATCCAGGATGGAGGGTTGGAGGTGGTGAGAATGGCAAAGAAATGGAAGTCCAGAAAAACAGAAACCACCGCGAGCAAGAAACTATCTACAAGACATTCAAGGAGATACCACCTAACCCGAAGGAACCTTGGGACATTGAAATGGTCTATGATGACTCATTGACTCCAGTAATACCAACAGAACAGCCGCCTGACACTGACTGTACTGAAACACAACCTTCCCATAGTCGAGAAGTAAATAATGCAGCAGAAACGTTGGTTGTTCCTTCTCAAGGAGTAAACAGTGTTGTTTCTATGGTGCCGCTAACTAATATGGCAAGCAGCACAGATGAACCAGATCTAGAGCTGCTCGCTGTGCTGCTAAAAAATCCAGAATTGGTGTTTGCCTTGACTTCTGGGCAGGCTGGTAACTTGTCCAGTGAGGATACAGTAAAATTGCTGGATATGATTAAGGCTGGTGGGGCTGGTTTCGCTGGTAATTTAAATGGGTTAGCTAGTAAAATGGAGGAGAAGGTTGAAGTTTCTCTTCCATCCCCAACACCTTCAAGCAACCCTGGAACGAGTGGATGGAGACCAGAAGCTACAAGAAATGCATTTTCCCAACAAAACTCGATGCAGAACAGAGTGAGCCCTGGTTACAGTTCACCAGCAATGGCGGCCAACAGCAACTTCGTGCTTTCACAGCTTCCATCTGCTCTTACTAGTCCTCTACCGCAGCGATTATCGGCTGCCCAACAAGCAGTAACTGCATACTCACCAGAGCACGTCCATCAATTTCCCCATACTACAACCGTACCATCACACTTGCAGCATAACTATTCGAACATGGCTGTTCCTTCTGTTTGGGGTGAAAGCACAAGTAATGGCAAACCAGGCCCGTCGTATAACTCATATAATGTTGCAGCGGAAAGGCAACCCAACTCGCTCCCACCGCCCTTCTTGTCCAATCTGACACACCAACAAAGACGCTCGCCGCAACCACTGCAACAACAAACCCATTACTCCGATTCTCCCCATTATTCTGAGTCTCCCCATTACTCTGAGTCGCCTTATTTCTCTAAACCACCAACTGGGAAACCAGTCCCTCTGTCTGATTCATGGAGAGCTGGTAGGCAGGGTAACTATCATTATTTAGAGAACCAAAATCAGTACTACAATGCACCATCATATGGAGGACCTTTGCAGCAGCAACCTCAGTTGAGGTCGGGTCCTCCTTATGAAGGAAACGAATATGCGAACAATGGAGGAGGTTTTGAATCGTGGAGTCCTCCAGAGGATAGTCCGGCTAGAAATGCCGATTATAATATGCATGGAAGAAACGCGTACAGGCCTACTGACAGGTCGAGGCAAAGGAATACTCAGACTCCTGGATACCGAGATTATAGTAGGCAGGGACACAGGTGGCTGGACCGCGGCAGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

1022

Amino Acids

113.71

Weight (kDa)

8.69

Isoelectric Point (pI)

60.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02560 AT4G02560
fragaria_vesca	FvH4_2g25100 FvH4_2g25100 FvH4_2g25100
malus_domestica	MD03G1284300.v1.1 MD11G1302000.v1.1
prunus_persica	Prupe.8G255600_v2.0.a1 Prupe.8G255600_v2.0.a1
pyrus_communis	pycom03g22510 pycom11g26460
rosa_chinensis	RchiOBHm_Chr6g0293161
rosa_laevigata	RLG00000011970
rosa_multiflora	Rmu_sc0014786.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174400
rosa_rugosa	Rorug06G0233000 Rorug06G0233100
rosa_samantha	Rh6AG345700 Rh6BG353500 Rh6CG359900 Rh6DG346300
rosa_wichuraiana	Rw6G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2946
AccB1I	GGYRCC	4 cut(s)	137, 427, 1612, 1942
AccB7I	CCANNNNNTGG	3 cut(s)	160, 2714, 2813
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	3 cut(s)	1716, 2966, 3057
AclI	AACGTT	1 cut(s)	1898
AclWI	GGATC	6 cut(s)	15, 342, 390, 437, 479, 1007
AcoI	YGGCCR	2 cut(s)	1216, 2301
AcsI	RAATTY	3 cut(s)	31, 652, 1021
AcuI	CTGAAG	4 cut(s)	642, 1001, 1083, 1404
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	5 cut(s)	1434, 1849, 2439, 2795, 2969
AfiI	CCNNNNNNNGG	5 cut(s)	160, 1916, 2714, 2813, 2864
AflIII	ACRYGT	1 cut(s)	2964
AhlI	ACTAGT	1 cut(s)	2345
AjiI	CACGTC	1 cut(s)	2410
AjnI	CCWGG	6 cut(s)	1608, 1648, 2197, 2275, 2515, 3010
AjuI	GAANNNNNNNTTGG	2 cut(s)	2297, 2329
Alw21I	GWGCWC	6 cut(s)	78, 102, 175, 1321, 1584, 2409
Alw26I	GTCTC	3 cut(s)	319, 2209, 2676
AlwI	GGATC	6 cut(s)	15, 342, 390, 437, 479, 1007
AlwNI	CAGNNNCTG	2 cut(s)	2390, 3066
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	6 cut(s)	387, 1216, 1413, 2301, 2518, 2972
ApoI	RAATTY	3 cut(s)	31, 652, 1021
ArsI	GACNNNNNNTTYG	2 cut(s)	1474, 1506
AseI	ATTAAT	2 cut(s)	183, 459
AspA2I	CCTAGG	1 cut(s)	1156
AspLEI	GCGC	2 cut(s)	140, 298
AspS9I	GGNCC	4 cut(s)	2519, 2819, 2852, 3052
AsuC2I	CCSGG	1 cut(s)	1215
AsuHPI	GGTGA	6 cut(s)	109, 1043, 1682, 2280, 2391, 2504
AsuII	TTCGAA	1 cut(s)	2465
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	3 cut(s)	2819, 2852, 3052
AvrII	CCTAGG	1 cut(s)	1156
BaeI	ACNNNNGTAYC	2 cut(s)	2421, 2454
BanI	GGYRCC	4 cut(s)	137, 427, 1612, 1942
BanII	GRGCYC	3 cut(s)	78, 102, 2276
BbsI	GAAGAC	3 cut(s)	1050, 1089, 1628
Bbv12I	GWGCWC	6 cut(s)	78, 102, 175, 1321, 1584, 2409
BceAI	ACGGC	1 cut(s)	1600
BcgI	CGANNNNNNTGC	2 cut(s)	730, 764
BciT130I	CCWGG	6 cut(s)	1610, 1650, 2199, 2277, 2517, 3012
BciVI	GTATCC	3 cut(s)	639, 2062, 3008
BcnI	CCSGG	1 cut(s)	1215
BcoDI	GTCTC	3 cut(s)	319, 2209, 2676
BcuI	ACTAGT	1 cut(s)	2345
BfaI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2346, 2931
BfmI	CTRYAG	2 cut(s)	1002, 1428
BfoI	RGCGCY	1 cut(s)	141
BfuI	GTATCC	3 cut(s)	639, 2062, 3008
BglII	AGATCT	1 cut(s)	1981
BlnI	CCTAGG	1 cut(s)	1156
BmcAI	AGTACT	1 cut(s)	2795
Bme1390I	CCNGG	7 cut(s)	1215, 1610, 1650, 2199, 2277, 2517, 3012
Bme18I	GGWCC	3 cut(s)	2819, 2852, 3052
BmeT110I	CYCGRG	1 cut(s)	282
BmgBI	CACGTC	1 cut(s)	2410
BmgT120I	GGNCC	4 cut(s)	2519, 2819, 2852, 3052
BmiI	GGNNCC	6 cut(s)	139, 429, 1614, 1770, 1944, 2853
BmrFI	CCNGG	7 cut(s)	1215, 1610, 1650, 2199, 2277, 2517, 3012
BmrI	ACTGGG	1 cut(s)	2724
BmsI	GCATC	5 cut(s)	250, 493, 579, 1133, 2247
BmuI	ACTGGG	1 cut(s)	2724
BpiI	GAAGAC	3 cut(s)	1050, 1089, 1628
BplI	GAGNNNNNCTC	3 cut(s)	28, 1492, 1524
BpmI	CTGGAG	4 cut(s)	86, 440, 1794, 2898
Bpu10I	CCTNAGC	1 cut(s)	1410
Bpu14I	TTCGAA	1 cut(s)	2465
BpuEI	CTTGAG	1 cut(s)	1899
BpuMI	CCSGG	1 cut(s)	1215
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	2209
BsaJI	CCNNGG	7 cut(s)	1016, 1156, 1616, 1772, 2197, 2275, 3055
BsaXI	ACNNNNNCTCC	6 cut(s)	1537, 1567, 2737, 2767, 2992, 3022
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 1916, 2714, 2813, 2864
Bse1I	ACTGG	5 cut(s)	1445, 1811, 2061, 2719, 2723
Bse3DI	GCAATG	3 cut(s)	974, 1055, 2301
BseBI	CCWGG	6 cut(s)	1610, 1650, 2199, 2277, 2517, 3012
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	7 cut(s)	1016, 1156, 1616, 1772, 2197, 2275, 3055
BseGI	GGATG	7 cut(s)	508, 1047, 1152, 1169, 1658, 2174, 2216
BseLI	CCNNNNNNNGG	5 cut(s)	160, 1916, 2714, 2813, 2864
BseMI	GCAATG	3 cut(s)	974, 1055, 2301
BseMII	CTCAG	6 cut(s)	6, 1424, 2658, 2676, 2852, 3017
BseNI	ACTGG	5 cut(s)	1445, 1811, 2061, 2719, 2723
BseRI	GAGGAG	2 cut(s)	2165, 2904
BsgI	GTGCAG	2 cut(s)	1092, 1618
Bsh1236I	CGCG	3 cut(s)	1716, 2966, 3057
BshFI	GGCC	6 cut(s)	389, 1218, 1415, 2303, 2520, 2974
BshNI	GGYRCC	4 cut(s)	137, 427, 1612, 1942
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	6 cut(s)	78, 102, 175, 1321, 1584, 2409
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	1215, 2927
BslFI	GGGAC	3 cut(s)	1790, 2711, 3051
BslI	CCNNNNNNNGG	5 cut(s)	160, 1916, 2714, 2813, 2864
BsmAI	GTCTC	3 cut(s)	319, 2209, 2676
BsmFI	GGGAC	3 cut(s)	1790, 2711, 3051
BsnI	GGCC	6 cut(s)	389, 1218, 1415, 2303, 2520, 2974
Bso31I	GGTCTC	1 cut(s)	2209
BsoBI	CYCGRG	1 cut(s)	282
Bsp119I	TTCGAA	1 cut(s)	2465
Bsp1286I	GDGCHC	7 cut(s)	78, 102, 175, 1321, 1584, 2276, 2409
Bsp143I	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
Bsp19I	CCATGG	1 cut(s)	1016
BspANI	GGCC	6 cut(s)	389, 1218, 1415, 2303, 2520, 2974
BspCNI	CTCAG	6 cut(s)	7, 1423, 2659, 2677, 2851, 3016
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	3 cut(s)	1716, 2966, 3057
BspLI	GGNNCC	6 cut(s)	139, 429, 1614, 1770, 1944, 2853
BspPI	GGATC	6 cut(s)	15, 342, 390, 437, 479, 1007
BspQI	GCTCTTC	2 cut(s)	83, 801
BspT104I	TTCGAA	1 cut(s)	2465
BspT107I	GGYRCC	4 cut(s)	137, 427, 1612, 1942
BspTNI	GGTCTC	1 cut(s)	2209
BsrDI	GCAATG	3 cut(s)	974, 1055, 2301
BsrI	ACTGG	5 cut(s)	1445, 1811, 2061, 2719, 2723
BssECI	CCNNGG	7 cut(s)	1016, 1156, 1616, 1772, 2197, 2275, 3055
BssMI	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	3 cut(s)	1016, 1156, 1772
Bst2UI	CCWGG	6 cut(s)	1610, 1650, 2199, 2277, 2517, 3012
Bst4CI	ACNGT	5 cut(s)	1847, 1928, 2074, 2285, 2437
Bst6I	CTCTTC	3 cut(s)	83, 801, 2175
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	3 cut(s)	170, 2390, 2626
BstBI	TTCGAA	1 cut(s)	2465
BstC8I	GCNNGC	9 cut(s)	128, 1276, 1317, 1417, 1718, 1963, 1995, 2046, 2615
BstDEI	CTNAG	6 cut(s)	15, 1410, 2667, 2685, 2838, 3003
BstDSI	CCRYGG	3 cut(s)	1016, 1616, 3055
BstENI	CCTNNNNNAGG	2 cut(s)	1914, 2862
BstF5I	GGATG	7 cut(s)	508, 1047, 1152, 1169, 1658, 2174, 2216
BstFNI	CGCG	3 cut(s)	1716, 2966, 3057
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	140, 298
BstKTI	GATC	9 cut(s)	10, 93, 291, 350, 398, 445, 487, 1015, 1984
BstMAI	GTCTC	3 cut(s)	319, 2209, 2676
BstMBI	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
BstNI	CCWGG	6 cut(s)	1610, 1650, 2199, 2277, 2517, 3012
BstSCI	CCNGG	7 cut(s)	1213, 1608, 1648, 2197, 2275, 2515, 3010
BstSFI	CTRYAG	2 cut(s)	1002, 1428
BstUI	CGCG	3 cut(s)	1716, 2966, 3057
BstV2I	GAAGAC	3 cut(s)	1050, 1089, 1628
BstX2I	RGATCY	3 cut(s)	7, 395, 1981
BstYI	RGATCY	3 cut(s)	7, 395, 1981
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	3 cut(s)	639, 2062, 3008
BsuRI	GGCC	6 cut(s)	389, 1218, 1415, 2303, 2520, 2974
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	3 cut(s)	1016, 1616, 3055
BtgZI	GCGATG	1 cut(s)	1023
BtrI	CACGTC	1 cut(s)	2410
BtsCI	GGATG	7 cut(s)	508, 1047, 1152, 1169, 1658, 2174, 2216
BtsI	GCAGTG	1 cut(s)	2624
BtsIMutI	CAGTG	7 cut(s)	298, 399, 1839, 1933, 2068, 2624, 3064
Cac8I	GCNNGC	9 cut(s)	128, 1276, 1317, 1417, 1718, 1963, 1995, 2046, 2615
CaiI	CAGNNNCTG	2 cut(s)	2390, 3066
CfoI	GCGC	2 cut(s)	140, 298
Cfr13I	GGNCC	4 cut(s)	2519, 2819, 2852, 3052
Cfr42I	CCGCGG	1 cut(s)	3058
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	2 cut(s)	1194, 2619
Csp6I	GTAC	5 cut(s)	1433, 1848, 2438, 2794, 2968
CviAII	CATG	7 cut(s)	708, 943, 1017, 1390, 2470, 2742, 2954
CviQI	GTAC	5 cut(s)	1433, 1848, 2438, 2794, 2968
DdeI	CTNAG	6 cut(s)	15, 1410, 2667, 2685, 2838, 3003
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	9 cut(s)	9, 92, 290, 349, 397, 444, 486, 1014, 1983
DpnII	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
DraI	TTTAAA	2 cut(s)	474, 2127
EaeI	YGGCCR	2 cut(s)	1216, 2301
Eam1104I	CTCTTC	3 cut(s)	83, 801, 2175
EarI	CTCTTC	3 cut(s)	83, 801, 2175
Ecl136II	GAGCTC	2 cut(s)	76, 100
Eco130I	CCWWGG	3 cut(s)	1016, 1156, 1772
Eco147I	AGGCCT	1 cut(s)	2974
Eco24I	GRGCYC	3 cut(s)	78, 102, 2276
Eco31I	GGTCTC	1 cut(s)	2209
Eco32I	GATATC	1 cut(s)	1297
Eco47I	GGWCC	3 cut(s)	2819, 2852, 3052
Eco53kI	GAGCTC	2 cut(s)	76, 100
Eco57I	CTGAAG	4 cut(s)	642, 1001, 1083, 1404
Eco88I	CYCGRG	1 cut(s)	282
EcoICRI	GAGCTC	2 cut(s)	76, 100
EcoNI	CCTNNNNNAGG	2 cut(s)	1914, 2862
EcoO109I	RGGNCCY	2 cut(s)	2819, 2852
EcoRI	GAATTC	2 cut(s)	31, 1021
EcoRII	CCWGG	6 cut(s)	1608, 1648, 2197, 2275, 2515, 3010
EcoRV	GATATC	1 cut(s)	1297
EcoT14I	CCWWGG	3 cut(s)	1016, 1156, 1772
EcoT22I	ATGCAT	2 cut(s)	2239, 2955
EcoT38I	GRGCYC	3 cut(s)	78, 102, 2276
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	3 cut(s)	1016, 1156, 1772
FaeI	CATG	7 cut(s)	711, 946, 1020, 1393, 2473, 2745, 2957
FalI	AAGNNNNNCTT	6 cut(s)	907, 939, 1035, 1067, 2154, 2186
FaqI	GGGAC	3 cut(s)	1790, 2711, 3051
FatI	CATG	7 cut(s)	707, 942, 1016, 1389, 2469, 2741, 2953
FauI	CCCGC	1 cut(s)	1222
FauNDI	CATATG	2 cut(s)	807, 2812
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	7 cut(s)	515, 1034, 1139, 1156, 1665, 2161, 2223
FriOI	GRGCYC	3 cut(s)	78, 102, 2276
FspBI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2346, 2931
GlaI	GCGC	2 cut(s)	139, 297
GsuI	CTGGAG	4 cut(s)	86, 440, 1794, 2898
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	6 cut(s)	389, 1218, 1415, 2303, 2520, 2974
HapII	CCGG	2 cut(s)	1215, 2927
HgaI	GACGC	2 cut(s)	1194, 2619
HhaI	GCGC	2 cut(s)	140, 298
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	7 cut(s)	711, 946, 1020, 1393, 2473, 2745, 2957
Hin6I	GCGC	2 cut(s)	138, 296
HinP1I	GCGC	2 cut(s)	138, 296
HincII	GTYRAC	4 cut(s)	61, 344, 714, 1039
HindII	GTYRAC	4 cut(s)	61, 344, 714, 1039
HindIII	AAGCTT	1 cut(s)	921
HpaI	GTTAAC	1 cut(s)	1039
HpaII	CCGG	2 cut(s)	1215, 2927
HphI	GGTGA	6 cut(s)	109, 1043, 1682, 2280, 2391, 2504
Hpy166II	GTNNAC	8 cut(s)	61, 344, 714, 1039, 1241, 1523, 1924, 2288
Hpy8I	GTNNAC	8 cut(s)	61, 344, 714, 1039, 1241, 1523, 1924, 2288
Hpy99I	CGWCG	4 cut(s)	41, 62, 116, 2527
HpyCH4III	ACNGT	5 cut(s)	1847, 1928, 2074, 2285, 2437
HpyCH4IV	ACGT	3 cut(s)	552, 1898, 2409
HpyF3I	CTNAG	6 cut(s)	15, 1410, 2667, 2685, 2838, 3003
HpySE526I	ACGT	3 cut(s)	552, 1898, 2409
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	7 cut(s)	711, 946, 1020, 1393, 2473, 2745, 2957
HspAI	GCGC	2 cut(s)	138, 296
KasI	GGCGCC	1 cut(s)	137
KspAI	GTTAAC	1 cut(s)	1039
KspI	CCGCGG	1 cut(s)	3058
Kzo9I	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
LguI	GCTCTTC	2 cut(s)	83, 801
LmnI	GCTCC	6 cut(s)	73, 105, 897, 1558, 1579, 2574
LweI	GCATC	5 cut(s)	250, 493, 579, 1133, 2247
MaeI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2346, 2931
MaeII	ACGT	3 cut(s)	552, 1898, 2409
MaeIII	GTNAC	7 cut(s)	115, 703, 1480, 2051, 2279, 2386, 2762
MalI	GATC	9 cut(s)	9, 92, 290, 349, 397, 444, 486, 1014, 1983
MboI	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
MfeI	CAATTG	1 cut(s)	1199
MflI	RGATCY	3 cut(s)	7, 395, 1981
MhlI	GDGCHC	7 cut(s)	78, 102, 175, 1321, 1584, 2276, 2409
MluI	ACGCGT	1 cut(s)	2964
Mly113I	GGCGCC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	1642
Mph1103I	ATGCAT	2 cut(s)	2239, 2955
MslI	CAYNNNNRTG	1 cut(s)	1784
MspA1I	CMGCKG	5 cut(s)	167, 725, 1229, 2549, 3057
MspI	CCGG	2 cut(s)	1215, 2927
MspR9I	CCNGG	7 cut(s)	1215, 1610, 1650, 2199, 2277, 2517, 3012
MunI	CAATTG	1 cut(s)	1199
MvaI	CCWGG	6 cut(s)	1610, 1650, 2199, 2277, 2517, 3012
MvnI	CGCG	3 cut(s)	1716, 2966, 3057
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	1 cut(s)	1215
NcoI	CCATGG	1 cut(s)	1016
NdeI	CATATG	2 cut(s)	807, 2812
NdeII	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
NlaIII	CATG	7 cut(s)	711, 946, 1020, 1393, 2473, 2745, 2957
NlaIV	GGNNCC	6 cut(s)	139, 429, 1614, 1770, 1944, 2853
NmuCI	GTSAC	2 cut(s)	115, 1480
NsiI	ATGCAT	2 cut(s)	2239, 2955
NspV	TTCGAA	1 cut(s)	2465
PceI	AGGCCT	1 cut(s)	2974
PciSI	GCTCTTC	2 cut(s)	83, 801
PfeI	GAWTC	7 cut(s)	278, 959, 1136, 1466, 2651, 2738, 2900
PflMI	CCANNNNNTGG	3 cut(s)	160, 2714, 2813
PfoI	TCCNGGA	2 cut(s)	1648, 3010
PluTI	GGCGCC	1 cut(s)	141
PpuMI	RGGWCCY	2 cut(s)	2819, 2852
PshBI	ATTAAT	2 cut(s)	183, 459
PsiI	TTATAA	1 cut(s)	2946
Psp124BI	GAGCTC	2 cut(s)	78, 102
Psp1406I	AACGTT	1 cut(s)	1898
Psp5II	RGGWCCY	2 cut(s)	2819, 2852
Psp6I	CCWGG	6 cut(s)	1608, 1648, 2197, 2275, 2515, 3010
PspGI	CCWGG	6 cut(s)	1608, 1648, 2197, 2275, 2515, 3010
PspN4I	GGNNCC	6 cut(s)	139, 429, 1614, 1770, 1944, 2853
PspPI	GGNCC	4 cut(s)	2519, 2819, 2852, 3052
PspPPI	RGGWCCY	2 cut(s)	2819, 2852
PsrI	GAACNNNNNNTAC	2 cut(s)	1425, 1457
PstNI	CAGNNNCTG	2 cut(s)	2390, 3066
PsuI	RGATCY	3 cut(s)	7, 395, 1981
PvuII	CAGCTG	2 cut(s)	167, 725
RsaI	GTAC	5 cut(s)	1434, 1849, 2439, 2795, 2969
RsaNI	GTAC	5 cut(s)	1433, 1848, 2438, 2794, 2968
RseI	CAYNNNNRTG	1 cut(s)	1784
SacI	GAGCTC	2 cut(s)	78, 102
SacII	CCGCGG	1 cut(s)	3058
SalI	GTCGAC	1 cut(s)	59
SapI	GCTCTTC	2 cut(s)	83, 801
Sau3AI	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
Sau96I	GGNCC	4 cut(s)	2519, 2819, 2852, 3052
ScaI	AGTACT	1 cut(s)	2795
ScrFI	CCNGG	7 cut(s)	1215, 1610, 1650, 2199, 2277, 2517, 3012
SduI	GDGCHC	7 cut(s)	78, 102, 175, 1321, 1584, 2276, 2409
SfaNI	GCATC	5 cut(s)	250, 493, 579, 1133, 2247
SfcI	CTRYAG	2 cut(s)	1002, 1428
SfoI	GGCGCC	1 cut(s)	139
Sfr303I	CCGCGG	1 cut(s)	3058
SfuI	TTCGAA	1 cut(s)	2465
SgrBI	CCGCGG	1 cut(s)	3058
SinI	GGWCC	3 cut(s)	2819, 2852, 3052
SmiI	ATTTAAAT	1 cut(s)	2127
SmiMI	CAYNNNNRTG	1 cut(s)	1784
SmlI	CTYRAG	1 cut(s)	1914
SmoI	CTYRAG	1 cut(s)	1914
SpeI	ACTAGT	1 cut(s)	2345
SseBI	AGGCCT	1 cut(s)	2974
SspDI	GGCGCC	1 cut(s)	137
SspI	AATATT	2 cut(s)	187, 577
SspMI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2346, 2931
SstI	GAGCTC	2 cut(s)	78, 102
StuI	AGGCCT	1 cut(s)	2974
StyD4I	CCNGG	7 cut(s)	1213, 1608, 1648, 2197, 2275, 2515, 3010
StyI	CCWWGG	3 cut(s)	1016, 1156, 1772
SwaI	ATTTAAAT	1 cut(s)	2127
TaaI	ACNGT	5 cut(s)	1847, 1928, 2074, 2285, 2437
TaiI	ACGT	3 cut(s)	555, 1901, 2412
TaqI	TCGA	7 cut(s)	39, 60, 93, 1873, 2255, 2465, 2987
TaqII	GACCGA	1 cut(s)	1440
TatI	WGTACW	2 cut(s)	1847, 2793
TauI	GCSGC	5 cut(s)	1834, 1948, 2303, 2620, 3060
TfiI	GAWTC	7 cut(s)	278, 959, 1136, 1466, 2651, 2738, 2900
TscAI	CASTG	6 cut(s)	298, 406, 1846, 1933, 2068, 2631
TseFI	GTSAC	2 cut(s)	115, 1480
Tsp45I	GTSAC	2 cut(s)	115, 1480
TspGWI	ACGGA	4 cut(s)	25, 232, 477, 1583
TspRI	CASTG	6 cut(s)	298, 406, 1846, 1933, 2068, 2631
Van91I	CCANNNNNTGG	3 cut(s)	160, 2714, 2813
VpaK11BI	GGWCC	3 cut(s)	2819, 2852, 3052
VspI	ATTAAT	2 cut(s)	183, 459
XagI	CCTNNNNNAGG	2 cut(s)	1914, 2862
XapI	RAATTY	3 cut(s)	31, 652, 1021
XbaI	TCTAGA	1 cut(s)	1984
XmaJI	CCTAGG	1 cut(s)	1156
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2346, 2931
ZrmI	AGTACT	1 cut(s)	2795
Zsp2I	ATGCAT	2 cut(s)	2239, 2955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.