Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009604

Physical Location & Seq

Genomic Coordinates Forward (+)

14065742 .. 14073580

Gene Structure 7839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2841 bp

ATGGAGGATCTCTCTGAGCTAAAGATAGGGAATTCCGTCGAGTCCTTCCACAAGTTCGTCGACTCGCAGAGGGAGCTCTTCCACCGCCAGATCGATGAGCTCCAGAAAATCGTCGTCACCCAATGCAAGCTCACCGGCGCCAATCCTCTCTCCCAAGAGATGGTTCGTGATTTTTTTAATAGTCAACGATCTAGAGTTAGAAAAATAGTTCAGTTGTCAAGGGAGAAGGCCATCAGATCCACTGAACATAAAGAATTGCTGGAGGGGGTGCCGACAAGCTCTGATCCATTGATACCAATTAATCCCCTTCCTTTAAACACTATTGATCCGTCCAATGTTGAGGATGCACCATCTTGCTCAACACAAGATGATACTCTTTCTGGACTAGATGACGTTGATAAACATTTTGTTGAAAATATTTTCAACTTGATGCGGAAAGAAGAAACATTTTCTGGGCAAGTGAAAGTGTTAGAGTTGATATTGCGGATACAAAATTCTTCAGTATTATGCTGGTTTTTAACTAAAGGTGGCGTGATGATTTTAGTAACATGGTTGACACAAGCAGCTGATGAAGAACAAACTAGTGTTCTGCTTGTCATCTTAAAGGTTCTTTGCCATTTGCCTCTATCCAAAGCTCTTCCTGTTCATATGTCAGCCATACTGCAAAGTGTTAATAGACTGCGGTTTTACAGGACACCAGAAATATCAAACAGGGCAAGGGTTTTGTTATCAAGATGGAGCAAGTCTTTAGCAAGAAGCCAAGCTTTGAAGAAACCAAATGGCATGAAAACATCTAATGATTCACAAGAATTAGCATTGCTGAAGCAAAGGCAAGGATCTCTTTTCCACCCCTGGGAGAAATCGGAGTCTTCAGAACCAATGAAGCTATTGACAGCATCATCAGATGATTCTAATAAGAAACACATCCTAGGTGTATCTTCATCCCAATTTAGAGGACGCAGAAAAGTTCAATTGGTGGAACAGCCCGGCCAAAAAACAGCGGGGAGAAGTTCACAGGTTGCAAAAACAACACCTGTCAGTCAGGCTCGCCCAATGTCTGTTGATGATATCCAAAAAGCAAAATTGCGAGCACAATATATGCAGAGCAAGTATGGAAAGTCTGCTTCCTCTAATGAAAATAAAGAAGTGAAGGCTGAAGGCGTGAACAAACCTCCAATCGCTCAGGCCAGCATTTTACCTGTAGTACCTAATGTTCCAGTTTGGTCTAGTATTGAGGAATCCAAGAAACCTGTGACACTTCCTTTGAAAGAGAGGGAAACTCCTGATGTAAGTTTACAGCCTATTGGGAGTTTCCAGACTATTGCTCCAAAGCTGAAAACGGATATGAAGGAGCACATCTGGGAGAAGTGCAGGAGAGTCCAGGTGCCGTGGAAGACACCACCAGAAATAAAACTTAATCCAGGATGGAGGGTTGGAGGTGGTGAGAATGGCAAAGAAATGGAAGTCCAGAAAAACAGAAACCACCGCGAGCAGGAAACTATCTACAAGACATTCAAGGAGATACCACCCAACCCGAAGGAACCGTGGGACATTGAAATGGACTATGATGACTCATTGACTCCAGTAATACCAACAGAACAGCCGCCTGACACTGACTGTACTGAAACACAACCTTCCCATAGTCGAGAAGTAAATAATGCAGCAGAAACGTTGGTTGTTCCTTCTCAAGGAGTAAACAGTGTTGTTTCTATGGTGCCGCTAACTAATATGGCAAGCAGCACAGCTGAACCAGATCTAGAGCTGCTCGCTGTGCTGCTAAAAAATCCAGAATTGGTGTTTGCCTTGACTTCTGGGCAGGCTGGTAACTTGTCCAGTGAGGATACAGTAAAATTGCTGGATATGATTAAGGCTGGTGGGGCTGGTTTCGCTGGTAATTTAAATGGGTTACCTAGTAAAATGGAGGAGAAGGTTGAAGTTTCTCTTCCATCCCCAACACCTTCAAGCAACCCTGGAACGAGTGGATGGAGACCAGAAGCTACAAGAAATGCATTTTCCCAACAAAACTCGATGCAGAACAGAGTGAGCCCTGGTTACAGTTCACCAGCAATGGCGGCCAACAGCAACTTGGTGCTTTCACAGCTTCCATCTGCTCTTACTAGTCCTCTACCGCAGCGACTATCGGCTGTCCAACAAGCAGTACCTGCATACTCACCAGAGCACGTCCATCAATTTCCCCATACTACAACCGTACCATCACACTTGCAGCATAACTATTCAAACATGGCTGTTCCTTCTGTTTGGGGTGAAAGCACCAGTAATGGCAAACCAGGCCCGTCGTATAACTCATATAATGTAGCAGCGGAAAGGCAACCCAACTCGCTCCCACCGCCCTTCTTGTCCAATCTGACACACCAACAAAGACGCTCGCCGCAACCACTGCAACAGCAAACCCATTACTCCGATTCTCCCCATTATTCTGAGTCTTCCCATTACTCTGAGTCACCCTATTTCTCTAAACCACCAACTGGGAAACCAGTCCCTCTGTCTGATTCATGGAGAGCTGGTAGGCAGGGTAACTATCATTATTTAGAGAACCAAAATCAGTACTACAATGCACCATCATATGGAGGACCTTTGCAGCAGCAACCTCAGTTGAGGTCGGGTCCTCCTTATGAAGGAAATGAATTTGCGAACAATGGAGGAGGTTTTGAATCGTGGAGTCCTCCAGAGGATAGTCCGGCTAGAAATGCCGATTATAATATGCATGGAAGAAACGCGTATAGGCCTACTGACAGGTCGAGGCAAAGGAATACTCAGACTCCCGGATACCGAGATTATAGTAGGCAGGGACACAGGTGGCCGGACCGTGGCAGACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

946

Amino Acids

105.51

Weight (kDa)

8.73

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02560 AT4G02560
fragaria_vesca	FvH4_2g25100 FvH4_2g25100 FvH4_2g25100
malus_domestica	MD03G1284300.v1.1 MD11G1302000.v1.1
prunus_persica	Prupe.8G255600_v2.0.a1 Prupe.8G255600_v2.0.a1
pyrus_communis	pycom03g22510 pycom11g26460
rosa_chinensis	RchiOBHm_Chr6g0293161
rosa_laevigata	RLG00000011970
rosa_multiflora	Rmu_sc0014786.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174400
rosa_rugosa	Rorug06G0233000 Rorug06G0233100
rosa_samantha	Rh6AG345700 Rh6BG353500 Rh6CG359900 Rh6DG346300
rosa_wichuraiana	Rw6G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2718
Acc36I	ACCTGC	1 cut(s)	2170
AccB1I	GGYRCC	4 cut(s)	137, 268, 1384, 1714
AccB7I	CCANNNNNTGG	3 cut(s)	160, 2486, 2585
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	2 cut(s)	1488, 2738
AclI	AACGTT	1 cut(s)	1670
AclWI	GGATC	5 cut(s)	15, 231, 278, 320, 844
AcoI	YGGCCR	3 cut(s)	988, 2073, 2819
AcsI	RAATTY	3 cut(s)	31, 493, 2645
AcuI	CTGAAG	4 cut(s)	483, 842, 855, 1176
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	5 cut(s)	1206, 1621, 2160, 2211, 2567
AfiI	CCNNNNNNNGG	8 cut(s)	160, 853, 1492, 1688, 2486, 2585, 2636, 2828
AflIII	ACRYGT	1 cut(s)	2736
AhlI	ACTAGT	2 cut(s)	581, 2117
AjiI	CACGTC	1 cut(s)	2182
AjnI	CCWGG	6 cut(s)	851, 1380, 1420, 1969, 2047, 2287
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
Alw21I	GWGCWC	5 cut(s)	78, 102, 1093, 1356, 2181
Alw26I	GTCTC	1 cut(s)	1981
AlwI	GGATC	5 cut(s)	15, 231, 278, 320, 844
AlwNI	CAGNNNCTG	2 cut(s)	2162, 2838
AoxI	GGCC	7 cut(s)	228, 988, 1185, 2073, 2290, 2744, 2819
ApoI	RAATTY	3 cut(s)	31, 493, 2645
ArsI	GACNNNNNNTTYG	2 cut(s)	1246, 1278
AseI	ATTAAT	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	928
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	4 cut(s)	2291, 2591, 2624, 2824
AsuC2I	CCSGG	2 cut(s)	987, 2784
AsuHPI	GGTGA	7 cut(s)	109, 124, 1454, 2052, 2163, 2276, 2454
AvaII	GGWCC	3 cut(s)	2591, 2624, 2824
AvrII	CCTAGG	1 cut(s)	928
BaeI	ACNNNNGTAYC	2 cut(s)	2193, 2226
BanI	GGYRCC	4 cut(s)	137, 268, 1384, 1714
BanII	GRGCYC	3 cut(s)	78, 102, 2048
BbsI	GAAGAC	3 cut(s)	861, 1400, 2436
Bbv12I	GWGCWC	5 cut(s)	78, 102, 1093, 1356, 2181
BceAI	ACGGC	1 cut(s)	1372
BciT130I	CCWGG	6 cut(s)	853, 1382, 1422, 1971, 2049, 2289
BciVI	GTATCC	3 cut(s)	480, 1834, 2780
BcnI	CCSGG	2 cut(s)	987, 2784
BcoDI	GTCTC	1 cut(s)	1981
BcuI	ACTAGT	2 cut(s)	581, 2117
BfaI	CTAG	9 cut(s)	192, 386, 582, 929, 1227, 1757, 1911, 2118, 2703
BfmI	CTRYAG	1 cut(s)	1200
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	2170
BfuI	GTATCC	3 cut(s)	480, 1834, 2780
BglII	AGATCT	1 cut(s)	1753
BlnI	CCTAGG	1 cut(s)	928
BmcAI	AGTACT	1 cut(s)	2567
Bme1390I	CCNGG	8 cut(s)	853, 987, 1382, 1422, 1971, 2049, 2289, 2784
Bme18I	GGWCC	3 cut(s)	2591, 2624, 2824
BmgBI	CACGTC	1 cut(s)	2182
BmgT120I	GGNCC	4 cut(s)	2291, 2591, 2624, 2824
BmiI	GGNNCC	6 cut(s)	139, 270, 1386, 1542, 1716, 2625
BmrFI	CCNGG	8 cut(s)	853, 987, 1382, 1422, 1971, 2049, 2289, 2784
BmrI	ACTGGG	1 cut(s)	2496
BmsI	GCATC	4 cut(s)	334, 420, 905, 2019
BmuI	ACTGGG	1 cut(s)	2496
BpiI	GAAGAC	3 cut(s)	861, 1400, 2436
BplI	GAGNNNNNCTC	3 cut(s)	28, 1264, 1296
BpmI	CTGGAG	4 cut(s)	86, 281, 1566, 2670
Bpu10I	CCTNAGC	1 cut(s)	1182
BpuEI	CTTGAG	1 cut(s)	1671
BpuMI	CCSGG	2 cut(s)	987, 2784
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	1981
BsaJI	CCNNGG	8 cut(s)	851, 852, 928, 1388, 1544, 1969, 2047, 2827
BsaXI	ACNNNNNCTCC	6 cut(s)	1309, 1339, 2509, 2539, 2764, 2794
Bsc4I	CCNNNNNNNGG	8 cut(s)	160, 853, 1492, 1688, 2486, 2585, 2636, 2828
Bse118I	RCCGGY	1 cut(s)	134
Bse1I	ACTGG	6 cut(s)	1217, 1583, 1833, 2274, 2491, 2495
Bse3DI	GCAATG	2 cut(s)	815, 2073
BseBI	CCWGG	6 cut(s)	853, 1382, 1422, 1971, 2049, 2289
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	8 cut(s)	851, 852, 928, 1388, 1544, 1969, 2047, 2827
BseGI	GGATG	6 cut(s)	349, 924, 941, 1430, 1946, 1988
BseLI	CCNNNNNNNGG	8 cut(s)	160, 853, 1492, 1688, 2486, 2585, 2636, 2828
BseMI	GCAATG	2 cut(s)	815, 2073
BseMII	CTCAG	6 cut(s)	6, 1196, 2430, 2448, 2624, 2789
BseNI	ACTGG	6 cut(s)	1217, 1583, 1833, 2274, 2491, 2495
BseRI	GAGGAG	2 cut(s)	1937, 2676
BsgI	GTGCAG	1 cut(s)	1390
Bsh1236I	CGCG	2 cut(s)	1488, 2738
BshFI	GGCC	7 cut(s)	230, 990, 1187, 2075, 2292, 2746, 2821
BshNI	GGYRCC	4 cut(s)	137, 268, 1384, 1714
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	5 cut(s)	78, 102, 1093, 1356, 2181
BsiSI	CCGG	5 cut(s)	135, 987, 2699, 2784, 2822
BslFI	GGGAC	3 cut(s)	1562, 2483, 2823
BslI	CCNNNNNNNGG	8 cut(s)	160, 853, 1492, 1688, 2486, 2585, 2636, 2828
BsmAI	GTCTC	1 cut(s)	1981
BsmFI	GGGAC	3 cut(s)	1562, 2483, 2823
BsnI	GGCC	7 cut(s)	230, 990, 1187, 2075, 2292, 2746, 2821
Bso31I	GGTCTC	1 cut(s)	1981
Bsp1286I	GDGCHC	6 cut(s)	78, 102, 1093, 1356, 2048, 2181
Bsp143I	GATC	8 cut(s)	7, 90, 188, 236, 283, 325, 836, 1753
BspANI	GGCC	7 cut(s)	230, 990, 1187, 2075, 2292, 2746, 2821
BspCNI	CTCAG	6 cut(s)	7, 1195, 2431, 2449, 2623, 2788
BspDI	ATCGAT	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	1488, 2738
BspLI	GGNNCC	6 cut(s)	139, 270, 1386, 1542, 1716, 2625
BspMI	ACCTGC	1 cut(s)	2170
BspPI	GGATC	5 cut(s)	15, 231, 278, 320, 844
BspQI	GCTCTTC	2 cut(s)	83, 642
BspT107I	GGYRCC	4 cut(s)	137, 268, 1384, 1714
BspTNI	GGTCTC	1 cut(s)	1981
BsrDI	GCAATG	2 cut(s)	815, 2073
BsrFI	RCCGGY	1 cut(s)	134
BsrI	ACTGG	6 cut(s)	1217, 1583, 1833, 2274, 2491, 2495
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	8 cut(s)	851, 852, 928, 1388, 1544, 1969, 2047, 2827
BssMI	GATC	8 cut(s)	7, 90, 188, 236, 283, 325, 836, 1753
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	928
Bst2UI	CCWGG	6 cut(s)	853, 1382, 1422, 1971, 2049, 2289
Bst4CI	ACNGT	7 cut(s)	1545, 1619, 1700, 1846, 2057, 2209, 2828
Bst6I	CTCTTC	3 cut(s)	83, 642, 1947
BstACI	GRCGYC	1 cut(s)	138
BstAPI	GCANNNNNTGC	2 cut(s)	2162, 2398
BstC8I	GCNNGC	9 cut(s)	128, 1048, 1089, 1189, 1490, 1735, 1767, 1818, 2387
BstDEI	CTNAG	6 cut(s)	15, 1182, 2439, 2457, 2610, 2775
BstDSI	CCRYGG	3 cut(s)	1388, 1544, 2827
BstEII	GGTNACC	1 cut(s)	1905
BstENI	CCTNNNNNAGG	2 cut(s)	1686, 2634
BstF5I	GGATG	6 cut(s)	349, 924, 941, 1430, 1946, 1988
BstFNI	CGCG	2 cut(s)	1488, 2738
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	8 cut(s)	10, 93, 191, 239, 286, 328, 839, 1756
BstMAI	GTCTC	1 cut(s)	1981
BstMBI	GATC	8 cut(s)	7, 90, 188, 236, 283, 325, 836, 1753
BstNI	CCWGG	6 cut(s)	853, 1382, 1422, 1971, 2049, 2289
BstPI	GGTNACC	1 cut(s)	1905
BstSCI	CCNGG	8 cut(s)	851, 985, 1380, 1420, 1969, 2047, 2287, 2782
BstSFI	CTRYAG	1 cut(s)	1200
BstUI	CGCG	2 cut(s)	1488, 2738
BstV2I	GAAGAC	3 cut(s)	861, 1400, 2436
BstX2I	RGATCY	4 cut(s)	7, 236, 836, 1753
BstYI	RGATCY	4 cut(s)	7, 236, 836, 1753
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	3 cut(s)	480, 1834, 2780
BsuRI	GGCC	7 cut(s)	230, 990, 1187, 2075, 2292, 2746, 2821
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	3 cut(s)	1388, 1544, 2827
BtrI	CACGTC	1 cut(s)	2182
BtsCI	GGATG	6 cut(s)	349, 924, 941, 1430, 1946, 1988
BtsI	GCAGTG	1 cut(s)	2396
BtsIMutI	CAGTG	6 cut(s)	240, 1611, 1705, 1840, 2396, 2836
BveI	ACCTGC	1 cut(s)	2170
Cac8I	GCNNGC	9 cut(s)	128, 1048, 1089, 1189, 1490, 1735, 1767, 1818, 2387
CaiI	CAGNNNCTG	2 cut(s)	2162, 2838
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	4 cut(s)	2291, 2591, 2624, 2824
ClaI	ATCGAT	1 cut(s)	93
CpoI	CGGWCCG	1 cut(s)	2824
CseI	GACGC	2 cut(s)	966, 2391
Csp6I	GTAC	5 cut(s)	1205, 1620, 2159, 2210, 2566
CspI	CGGWCCG	1 cut(s)	2824
CviAII	CATG	5 cut(s)	549, 784, 2242, 2514, 2726
CviQI	GTAC	5 cut(s)	1205, 1620, 2159, 2210, 2566
DdeI	CTNAG	6 cut(s)	15, 1182, 2439, 2457, 2610, 2775
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	8 cut(s)	9, 92, 190, 238, 285, 327, 838, 1755
DpnII	GATC	8 cut(s)	7, 90, 188, 236, 283, 325, 836, 1753
DraI	TTTAAA	2 cut(s)	315, 1899
EaeI	YGGCCR	3 cut(s)	988, 2073, 2819
Eam1104I	CTCTTC	3 cut(s)	83, 642, 1947
EarI	CTCTTC	3 cut(s)	83, 642, 1947
Ecl136II	GAGCTC	2 cut(s)	76, 100
Eco130I	CCWWGG	1 cut(s)	928
Eco147I	AGGCCT	1 cut(s)	2746
Eco24I	GRGCYC	3 cut(s)	78, 102, 2048
Eco31I	GGTCTC	1 cut(s)	1981
Eco32I	GATATC	1 cut(s)	1069
Eco47I	GGWCC	3 cut(s)	2591, 2624, 2824
Eco53kI	GAGCTC	2 cut(s)	76, 100
Eco57I	CTGAAG	4 cut(s)	483, 842, 855, 1176
Eco91I	GGTNACC	1 cut(s)	1905
EcoICRI	GAGCTC	2 cut(s)	76, 100
EcoNI	CCTNNNNNAGG	2 cut(s)	1686, 2634
EcoO109I	RGGNCCY	2 cut(s)	2591, 2624
EcoO65I	GGTNACC	1 cut(s)	1905
EcoRI	GAATTC	1 cut(s)	31
EcoRII	CCWGG	6 cut(s)	851, 1380, 1420, 1969, 2047, 2287
EcoRV	GATATC	1 cut(s)	1069
EcoT14I	CCWWGG	1 cut(s)	928
EcoT22I	ATGCAT	2 cut(s)	2011, 2727
EcoT38I	GRGCYC	3 cut(s)	78, 102, 2048
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	928
FaeI	CATG	5 cut(s)	552, 787, 2245, 2517, 2729
FalI	AAGNNNNNCTT	6 cut(s)	748, 780, 825, 857, 1926, 1958
FaqI	GGGAC	3 cut(s)	1562, 2483, 2823
FatI	CATG	5 cut(s)	548, 783, 2241, 2513, 2725
FauI	CCCGC	1 cut(s)	994
FauNDI	CATATG	2 cut(s)	648, 2584
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	6 cut(s)	356, 911, 928, 1437, 1933, 1995
FriOI	GRGCYC	3 cut(s)	78, 102, 2048
FspBI	CTAG	9 cut(s)	192, 386, 582, 929, 1227, 1757, 1911, 2118, 2703
GlaI	GCGC	1 cut(s)	139
GsuI	CTGGAG	4 cut(s)	86, 281, 1566, 2670
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	7 cut(s)	230, 990, 1187, 2075, 2292, 2746, 2821
HapII	CCGG	5 cut(s)	135, 987, 2699, 2784, 2822
HgaI	GACGC	2 cut(s)	966, 2391
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	552, 787, 2245, 2517, 2729
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	3 cut(s)	61, 185, 555
HindII	GTYRAC	3 cut(s)	61, 185, 555
HindIII	AAGCTT	1 cut(s)	762
HpaII	CCGG	5 cut(s)	135, 987, 2699, 2784, 2822
HphI	GGTGA	7 cut(s)	109, 124, 1454, 2052, 2163, 2276, 2454
Hpy166II	GTNNAC	8 cut(s)	61, 185, 555, 1013, 1165, 1295, 1696, 2060
Hpy8I	GTNNAC	8 cut(s)	61, 185, 555, 1013, 1165, 1295, 1696, 2060
Hpy99I	CGWCG	4 cut(s)	41, 62, 116, 2299
HpyCH4III	ACNGT	7 cut(s)	1545, 1619, 1700, 1846, 2057, 2209, 2828
HpyCH4IV	ACGT	3 cut(s)	393, 1670, 2181
HpyF3I	CTNAG	6 cut(s)	15, 1182, 2439, 2457, 2610, 2775
HpySE526I	ACGT	3 cut(s)	393, 1670, 2181
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	552, 787, 2245, 2517, 2729
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
Kzo9I	GATC	8 cut(s)	7, 90, 188, 236, 283, 325, 836, 1753
LguI	GCTCTTC	2 cut(s)	83, 642
LmnI	GCTCC	6 cut(s)	73, 105, 738, 1330, 1351, 2346
LweI	GCATC	4 cut(s)	334, 420, 905, 2019
MaeI	CTAG	9 cut(s)	192, 386, 582, 929, 1227, 1757, 1911, 2118, 2703
MaeII	ACGT	3 cut(s)	393, 1670, 2181
MaeIII	GTNAC	8 cut(s)	115, 544, 1252, 1823, 1905, 2051, 2460, 2534
MalI	GATC	8 cut(s)	9, 92, 190, 238, 285, 327, 838, 1755
MboI	GATC	8 cut(s)	7, 90, 188, 236, 283, 325, 836, 1753
MfeI	CAATTG	1 cut(s)	971
MflI	RGATCY	4 cut(s)	7, 236, 836, 1753
MhlI	GDGCHC	6 cut(s)	78, 102, 1093, 1356, 2048, 2181
MluI	ACGCGT	1 cut(s)	2736
Mly113I	GGCGCC	1 cut(s)	138
MmeI	TCCRAC	2 cut(s)	1414, 2173
Mph1103I	ATGCAT	2 cut(s)	2011, 2727
MseI	TTAA	9 cut(s)	177, 300, 314, 518, 602, 672, 1416, 1866, 1898
MslI	CAYNNNNRTG	1 cut(s)	1556
MspA1I	CMGCKG	4 cut(s)	566, 1001, 1745, 2321
MspI	CCGG	5 cut(s)	135, 987, 2699, 2784, 2822
MspR9I	CCNGG	8 cut(s)	853, 987, 1382, 1422, 1971, 2049, 2289, 2784
MunI	CAATTG	1 cut(s)	971
MvaI	CCWGG	6 cut(s)	853, 1382, 1422, 1971, 2049, 2289
MvnI	CGCG	2 cut(s)	1488, 2738
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	2 cut(s)	987, 2784
NdeI	CATATG	2 cut(s)	648, 2584
NdeII	GATC	8 cut(s)	7, 90, 188, 236, 283, 325, 836, 1753
NlaIII	CATG	5 cut(s)	552, 787, 2245, 2517, 2729
NlaIV	GGNNCC	6 cut(s)	139, 270, 1386, 1542, 1716, 2625
NmuCI	GTSAC	3 cut(s)	115, 1252, 2460
NsiI	ATGCAT	2 cut(s)	2011, 2727
PasI	CCCWGGG	1 cut(s)	852
PceI	AGGCCT	1 cut(s)	2746
PciSI	GCTCTTC	2 cut(s)	83, 642
PfeI	GAWTC	6 cut(s)	800, 908, 1238, 2423, 2510, 2672
PflMI	CCANNNNNTGG	3 cut(s)	160, 2486, 2585
PfoI	TCCNGGA	2 cut(s)	1420, 2782
PluTI	GGCGCC	1 cut(s)	141
PpuMI	RGGWCCY	2 cut(s)	2591, 2624
PshBI	ATTAAT	1 cut(s)	300
PsiI	TTATAA	1 cut(s)	2718
Psp124BI	GAGCTC	2 cut(s)	78, 102
Psp1406I	AACGTT	1 cut(s)	1670
Psp5II	RGGWCCY	2 cut(s)	2591, 2624
Psp6I	CCWGG	6 cut(s)	851, 1380, 1420, 1969, 2047, 2287
PspEI	GGTNACC	1 cut(s)	1905
PspGI	CCWGG	6 cut(s)	851, 1380, 1420, 1969, 2047, 2287
PspN4I	GGNNCC	6 cut(s)	139, 270, 1386, 1542, 1716, 2625
PspPI	GGNCC	4 cut(s)	2291, 2591, 2624, 2824
PspPPI	RGGWCCY	2 cut(s)	2591, 2624
PsrI	GAACNNNNNNTAC	2 cut(s)	1197, 1229
PstNI	CAGNNNCTG	2 cut(s)	2162, 2838
PsuI	RGATCY	4 cut(s)	7, 236, 836, 1753
PvuII	CAGCTG	2 cut(s)	566, 1745
RsaI	GTAC	5 cut(s)	1206, 1621, 2160, 2211, 2567
RsaNI	GTAC	5 cut(s)	1205, 1620, 2159, 2210, 2566
RseI	CAYNNNNRTG	1 cut(s)	1556
Rsr2I	CGGWCCG	1 cut(s)	2824
RsrII	CGGWCCG	1 cut(s)	2824
SacI	GAGCTC	2 cut(s)	78, 102
SalI	GTCGAC	1 cut(s)	59
SapI	GCTCTTC	2 cut(s)	83, 642
SaqAI	TTAA	9 cut(s)	177, 300, 314, 518, 602, 672, 1416, 1866, 1898
Sau3AI	GATC	8 cut(s)	7, 90, 188, 236, 283, 325, 836, 1753
Sau96I	GGNCC	4 cut(s)	2291, 2591, 2624, 2824
ScaI	AGTACT	1 cut(s)	2567
ScrFI	CCNGG	8 cut(s)	853, 987, 1382, 1422, 1971, 2049, 2289, 2784
SduI	GDGCHC	6 cut(s)	78, 102, 1093, 1356, 2048, 2181
SfaNI	GCATC	4 cut(s)	334, 420, 905, 2019
SfcI	CTRYAG	1 cut(s)	1200
SfoI	GGCGCC	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	134
SinI	GGWCC	3 cut(s)	2591, 2624, 2824
SmiI	ATTTAAAT	1 cut(s)	1899
SmiMI	CAYNNNNRTG	1 cut(s)	1556
SmlI	CTYRAG	1 cut(s)	1686
SmoI	CTYRAG	1 cut(s)	1686
SpeI	ACTAGT	2 cut(s)	581, 2117
SseBI	AGGCCT	1 cut(s)	2746
SspDI	GGCGCC	1 cut(s)	137
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	9 cut(s)	192, 386, 582, 929, 1227, 1757, 1911, 2118, 2703
SstI	GAGCTC	2 cut(s)	78, 102
StuI	AGGCCT	1 cut(s)	2746
StyD4I	CCNGG	8 cut(s)	851, 985, 1380, 1420, 1969, 2047, 2287, 2782
StyI	CCWWGG	1 cut(s)	928
SwaI	ATTTAAAT	1 cut(s)	1899
TaaI	ACNGT	7 cut(s)	1545, 1619, 1700, 1846, 2057, 2209, 2828
TaiI	ACGT	3 cut(s)	396, 1673, 2184
TaqI	TCGA	6 cut(s)	39, 60, 93, 1645, 2027, 2759
TatI	WGTACW	2 cut(s)	1619, 2565
TauI	GCSGC	4 cut(s)	1606, 1720, 2075, 2392
TfiI	GAWTC	6 cut(s)	800, 908, 1238, 2423, 2510, 2672
Tru1I	TTAA	9 cut(s)	177, 300, 314, 518, 602, 672, 1416, 1866, 1898
Tru9I	TTAA	9 cut(s)	177, 300, 314, 518, 602, 672, 1416, 1866, 1898
TscAI	CASTG	5 cut(s)	247, 1618, 1705, 1840, 2403
TseFI	GTSAC	3 cut(s)	115, 1252, 2460
Tsp45I	GTSAC	3 cut(s)	115, 1252, 2460
TspGWI	ACGGA	3 cut(s)	25, 318, 1355
TspRI	CASTG	5 cut(s)	247, 1618, 1705, 1840, 2403
Van91I	CCANNNNNTGG	3 cut(s)	160, 2486, 2585
VpaK11BI	GGWCC	3 cut(s)	2591, 2624, 2824
VspI	ATTAAT	1 cut(s)	300
XagI	CCTNNNNNAGG	2 cut(s)	1686, 2634
XapI	RAATTY	3 cut(s)	31, 493, 2645
XbaI	TCTAGA	2 cut(s)	191, 1756
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2083
XmaJI	CCTAGG	1 cut(s)	928
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	9 cut(s)	192, 386, 582, 929, 1227, 1757, 1911, 2118, 2703
ZrmI	AGTACT	1 cut(s)	2567
Zsp2I	ATGCAT	2 cut(s)	2011, 2727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.