Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009604

Physical Location & Seq

Genomic Coordinates Reverse (-)

54635893 .. 54643465

Gene Structure 7573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG345700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2319 bp

ATGGAGGATCTCTCTGAGCTAAAGATTGGGAATTCCGTCGAGTCCTTCCACAAGTTCGTCGACTCGCAGAGGGAGCTCTTCCACCGCCAGATCGATGAGCTCCAGAAAATCGTCGTCACCCAATGCAAGCTCACCGGGGCCAATCCTCTCTCCCAAGAGATGGCAGCTGGTGCTCTTTCTATTAATATTGGAAAAAGACCTAGAGATTTGTTAAATCCAAAGGCTATCAAGTATATGCAATCCGTTTTTTCTATTAAAGATGCGATTACGAAGAAGGAATCTCGGGAGATCAGTGCGCTGTTCGGGGTTTCTGTCTCACAGGTTCGTGATTTTTTTAATAGTCAACGATCCAGAGTTAGAAAAATAGTTCAGTTGTCAAGGGAGAAGGCCATCAGATCCACGGAATATAAAGAATTGCTGGAGGGGGTGCCGACAAGCACTGATCCATTGATACCAATTAATCCCCTTCCTTTAAACACTATTGATCCGTCCAATGTTGAGGATGCGCCATCTTGCTCAACACAAGATGATACTCTTTCTGGACTAGATGACGTTGATAAACATTTTGTTGAAAATATTTTCAACTTGATGCGGAAAGAAGAAACATTTTCTGGGCAAGTGAAAGTGTTAGAGTTGATATTGCGGATACAAAATTCTTCAGTATTATGCTGGTTTTTAACTAAAGGTGGCGTGATGATTTTAGTAACGTGGTTGACACAAGCAGCTGATGAAGAACAAACGAGTGTTCTGCTTGTCATCTTAAAGGTTCTTTGCCATTTGCCTCTATCCAAAGCTCTTCCTGTTCATATGTCAGCCATACTGCAAAGTGTTAATAGACTGCGGTTTTACAGGACACCAGAAATATCGAACAGGGCAAGGGTTTTGTTATCAAGATGGAGCAAGTCTTTAGCAAGAAGCCAAGCTTTGAAGAAACCAAATGGCATGAAAACATCTAATGATTCACAAGAATTAGCATTGCTGAAGCAAAGTATTGATGAAGCTATAGGCGATGATCCATGGAATTCAAATGGTGATGTTAACGAAGACATCCTTGCATTGCCGTTTGAAAGTGCAGATAAATTAAGGAAATTGGAGTCTTCAGAACCAGTGAAGCTATTGACAGCATCATCAGATGATTCTAATAAGAAACACATCCTAGGTGTATCTTCATCCCAATTTAGAGGACGCAGAAAAGTTCAATTGGTGGAGCAGCCCGGCCAAAAAACAGCGGGGAGAAGTTCACAGGTTGCAAAAACAACACCTGTCAGTCAGGCTCGCCCAATGTCTGTTGATGATATCCAAAAAGCAAAATTGCGAGCACAATATATGCAGAGCAAGTATGGAAAGTCTGCTTCCTCTAATGAAAATAAAGAAGTGAAGGCTGAAGGCGTGAACAAACCTCCAATCGCTCAGGCCAGCATTTTACCTGCAGTACCTAATGTTCCAGTTCAGTCTAGTATTGAGGAATCCAAGAAACCTGTGACACTTCCTTTGAAAGAGAGGGAAACTCATGATATAAGTTTACAGCCTATTGGGAGTTTCCAGACTATTGCTCCAAAGCTGAAAACGGATATGAAGGAGCACATCTGGGAGAAGTGCAGGAGAGTCCAGGTGCCGTGGAAGACACCACCAGAAATAAAACTTAATCCAGGATGGAGGGTTGGAGGTGGTGAGAATGGCAAAGAAATGGAAGGCCAGAAAAACAGAAACCACCGTGAGCAGGAAACTATCTACAAGACATTCAAGGAGATACCACCTAACCCGAAGGAACCTTGGGACATTGAAATGGACTATGATGACTCATTGACTCCAGTAATACCAACAGAACAGCCGCCTGACACTGACTGTACTGAAACACAACCTTCACATAGTCGAGAAGTAAATAATGCAGCAGAAACATTGGTTGTTCCTTCTCAAGGAGTAAACAGTGTTGTTTCTATGGTGCCGCTAACTAATATGGCAAGCAGCACAGCTGAACCAGATCTAGAGCTGCTCGCTGTGCTGCTAAAAAATCCAGAATTGGTGTTTGCCTTGACGTCTGGGCAGGCTGGTAACTTGTCCAGTGAGGATACAGTAAAATTGCTGGATATGATTAAGGCTGGTGGGGCTGGTTTCGCTGGTAATTTAAATGGGTTAGCTAGTAAAATGGAGGAGAAGGTTGAAGTTTCTCTTCCATCCCCAACACCTTCAAGCAACCCTGGAACGGTGCGTTACTCGGGCTCATTATGCAATTTTAGCCAGAACTTGTATACATTACATTCCAGTTTTTCACTAGCAGTATGTACAGTACATAGTCTCCTTCTTCTTCTCCTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

772

Amino Acids

85.38

Weight (kDa)

7.19

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02560 AT4G02560
fragaria_vesca	FvH4_2g25100 FvH4_2g25100 FvH4_2g25100
malus_domestica	MD03G1284300.v1.1 MD11G1302000.v1.1
prunus_persica	Prupe.8G255600_v2.0.a1 Prupe.8G255600_v2.0.a1
pyrus_communis	pycom03g22510 pycom11g26460
rosa_chinensis	RchiOBHm_Chr6g0293161
rosa_laevigata	RLG00000011970
rosa_multiflora	Rmu_sc0014786.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174400
rosa_rugosa	Rorug06G0233000 Rorug06G0233100
rosa_samantha	Rh6AG345700 Rh6BG353500 Rh6CG359900 Rh6DG346300
rosa_wichuraiana	Rw6G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2039
Acc36I	ACCTGC	1 cut(s)	1435
AccB1I	GGYRCC	3 cut(s)	427, 1612, 1942
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccI	GTMKAC	2 cut(s)	60, 2249
AciI	CCGC	7 cut(s)	85, 592, 643, 841, 1229, 1832, 1946
AclWI	GGATC	6 cut(s)	15, 342, 390, 437, 479, 1007
AcoI	YGGCCR	1 cut(s)	1216
AcsI	RAATTY	3 cut(s)	31, 652, 1021
AcuI	CTGAAG	4 cut(s)	642, 1001, 1083, 1404
AcyI	GRCGYC	1 cut(s)	2036
AfaI	GTAC	4 cut(s)	1434, 1849, 2284, 2289
AfiI	CCNNNNNNNGG	4 cut(s)	160, 1720, 1916, 2203
AjnI	CCWGG	3 cut(s)	1608, 1648, 2197
Alw21I	GWGCWC	5 cut(s)	78, 102, 175, 1321, 1584
Alw26I	GTCTC	2 cut(s)	319, 2300
AlwI	GGATC	6 cut(s)	15, 342, 390, 437, 479, 1007
Ama87I	CYCGRG	2 cut(s)	282, 2215
AoxI	GGCC	5 cut(s)	138, 387, 1216, 1413, 1693
ApeKI	GCWGC	7 cut(s)	164, 722, 1210, 1889, 1965, 1990, 2002
ApoI	RAATTY	3 cut(s)	31, 652, 1021
ArsI	GACNNNNNNTTYG	2 cut(s)	1474, 1506
AseI	ATTAAT	2 cut(s)	183, 459
AspA2I	CCTAGG	1 cut(s)	1156
AspLEI	GCGC	2 cut(s)	298, 508
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	2 cut(s)	136, 1215
AsuHPI	GGTGA	4 cut(s)	109, 124, 1043, 1682
AvaI	CYCGRG	2 cut(s)	282, 2215
AvrII	CCTAGG	1 cut(s)	1156
BanI	GGYRCC	3 cut(s)	427, 1612, 1942
BanII	GRGCYC	3 cut(s)	78, 102, 2222
BbsI	GAAGAC	3 cut(s)	1050, 1089, 1628
Bbv12I	GWGCWC	5 cut(s)	78, 102, 175, 1321, 1584
BbvI	GCAGC	7 cut(s)	176, 734, 1222, 1901, 1977, 1977, 1989
BccI	CCATC	6 cut(s)	154, 398, 517, 888, 1647, 2182
BceAI	ACGGC	2 cut(s)	1045, 1600
BcgI	CGANNNNNNTGC	2 cut(s)	730, 764
BciT130I	CCWGG	3 cut(s)	1610, 1650, 2199
BciVI	GTATCC	2 cut(s)	639, 2062
BcnI	CCSGG	2 cut(s)	136, 1215
BcoDI	GTCTC	2 cut(s)	319, 2300
BfaI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2273, 2317
BfmI	CTRYAG	2 cut(s)	1002, 1428
BfuAI	ACCTGC	1 cut(s)	1435
BfuI	GTATCC	2 cut(s)	639, 2062
BglII	AGATCT	1 cut(s)	1981
BisI	GCNGC	9 cut(s)	165, 723, 1211, 1832, 1890, 1946, 1966, 1991, 2003
BlnI	CCTAGG	1 cut(s)	1156
BlsI	GCNGC	9 cut(s)	166, 724, 1212, 1833, 1891, 1947, 1967, 1992, 2004
Bme1390I	CCNGG	5 cut(s)	136, 1215, 1610, 1650, 2199
BmeT110I	CYCGRG	2 cut(s)	282, 2215
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	5 cut(s)	139, 429, 1614, 1770, 1944
BmrFI	CCNGG	5 cut(s)	136, 1215, 1610, 1650, 2199
BmsI	GCATC	4 cut(s)	250, 493, 579, 1133
BpiI	GAAGAC	3 cut(s)	1050, 1089, 1628
BplI	GAGNNNNNCTC	3 cut(s)	28, 1492, 1524
BpmI	CTGGAG	3 cut(s)	86, 440, 1794
Bpu10I	CCTNAGC	1 cut(s)	1410
BpuEI	CTTGAG	1 cut(s)	1899
BpuMI	CCSGG	2 cut(s)	136, 1215
Bsa29I	ATCGAT	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	2036
BsaJI	CCNNGG	7 cut(s)	135, 399, 1016, 1156, 1616, 1772, 2197
BsaXI	ACNNNNNCTCC	4 cut(s)	1537, 1567, 2280, 2310
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 1720, 1916, 2203
Bse1I	ACTGG	5 cut(s)	1106, 1445, 1811, 2061, 2262
Bse3DI	GCAATG	2 cut(s)	974, 1055
BseBI	CCWGG	3 cut(s)	1610, 1650, 2199
BseCI	ATCGAT	1 cut(s)	93
BseDI	CCNNGG	7 cut(s)	135, 399, 1016, 1156, 1616, 1772, 2197
BseGI	GGATG	6 cut(s)	508, 1047, 1152, 1169, 1658, 2174
BseLI	CCNNNNNNNGG	4 cut(s)	160, 1720, 1916, 2203
BseMI	GCAATG	2 cut(s)	974, 1055
BseMII	CTCAG	2 cut(s)	6, 1424
BseNI	ACTGG	5 cut(s)	1106, 1445, 1811, 2061, 2262
BseRI	GAGGAG	2 cut(s)	2165, 2300
BseXI	GCAGC	7 cut(s)	176, 734, 1222, 1901, 1977, 1977, 1989
BsgI	GTGCAG	2 cut(s)	1092, 1618
BshFI	GGCC	5 cut(s)	140, 389, 1218, 1415, 1695
BshNI	GGYRCC	3 cut(s)	427, 1612, 1942
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	5 cut(s)	78, 102, 175, 1321, 1584
BsiHKCI	CYCGRG	2 cut(s)	282, 2215
BsiSI	CCGG	2 cut(s)	135, 1215
BslFI	GGGAC	1 cut(s)	1790
BslI	CCNNNNNNNGG	4 cut(s)	160, 1720, 1916, 2203
BsmAI	GTCTC	2 cut(s)	319, 2300
BsmFI	GGGAC	1 cut(s)	1790
BsnI	GGCC	5 cut(s)	140, 389, 1218, 1415, 1695
BsoBI	CYCGRG	2 cut(s)	282, 2215
Bsp1286I	GDGCHC	6 cut(s)	78, 102, 175, 1321, 1584, 2222
Bsp1407I	TGTACA	1 cut(s)	2282
Bsp143I	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
Bsp19I	CCATGG	1 cut(s)	1016
BspACI	CCGC	7 cut(s)	85, 592, 643, 841, 1229, 1832, 1946
BspANI	GGCC	5 cut(s)	140, 389, 1218, 1415, 1695
BspCNI	CTCAG	2 cut(s)	7, 1423
BspDI	ATCGAT	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	1510
BspLI	GGNNCC	5 cut(s)	139, 429, 1614, 1770, 1944
BspMAI	CTGCAG	1 cut(s)	1432
BspMI	ACCTGC	1 cut(s)	1435
BspPI	GGATC	6 cut(s)	15, 342, 390, 437, 479, 1007
BspQI	GCTCTTC	2 cut(s)	83, 801
BspT107I	GGYRCC	3 cut(s)	427, 1612, 1942
BsrDI	GCAATG	2 cut(s)	974, 1055
BsrGI	TGTACA	1 cut(s)	2282
BsrI	ACTGG	5 cut(s)	1106, 1445, 1811, 2061, 2262
BssECI	CCNNGG	7 cut(s)	135, 399, 1016, 1156, 1616, 1772, 2197
BssMI	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
BssNAI	GTATAC	1 cut(s)	2250
BssNI	GRCGYC	1 cut(s)	2036
BssT1I	CCWWGG	3 cut(s)	1016, 1156, 1772
Bst1107I	GTATAC	1 cut(s)	2250
Bst2UI	CCWGG	3 cut(s)	1610, 1650, 2199
Bst4CI	ACNGT	6 cut(s)	1715, 1847, 1928, 2074, 2206, 2287
Bst6I	CTCTTC	3 cut(s)	83, 801, 2175
BstACI	GRCGYC	1 cut(s)	2036
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	2282
BstC8I	GCNNGC	7 cut(s)	128, 1276, 1317, 1417, 1963, 1995, 2046
BstDEI	CTNAG	2 cut(s)	15, 1410
BstDSI	CCRYGG	3 cut(s)	399, 1016, 1616
BstENI	CCTNNNNNAGG	1 cut(s)	1914
BstF5I	GGATG	6 cut(s)	508, 1047, 1152, 1169, 1658, 2174
BstHHI	GCGC	2 cut(s)	298, 508
BstKTI	GATC	9 cut(s)	10, 93, 291, 350, 398, 445, 487, 1015, 1984
BstMAI	GTCTC	2 cut(s)	319, 2300
BstMBI	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
BstMWI	GCNNNNNNNGC	7 cut(s)	73, 170, 1999, 2105, 2114, 2226, 2235
BstNI	CCWGG	3 cut(s)	1610, 1650, 2199
BstSCI	CCNGG	5 cut(s)	134, 1213, 1608, 1648, 2197
BstSFI	CTRYAG	2 cut(s)	1002, 1428
BstV1I	GCAGC	7 cut(s)	176, 734, 1222, 1901, 1977, 1977, 1989
BstV2I	GAAGAC	3 cut(s)	1050, 1089, 1628
BstX2I	RGATCY	3 cut(s)	7, 395, 1981
BstYI	RGATCY	3 cut(s)	7, 395, 1981
BstZ17I	GTATAC	1 cut(s)	2250
Bsu15I	ATCGAT	1 cut(s)	93
BsuI	GTATCC	2 cut(s)	639, 2062
BsuRI	GGCC	5 cut(s)	140, 389, 1218, 1415, 1695
BsuTUI	ATCGAT	1 cut(s)	93
BtgI	CCRYGG	3 cut(s)	399, 1016, 1616
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	6 cut(s)	508, 1047, 1152, 1169, 1658, 2174
BtsIMutI	CAGTG	6 cut(s)	298, 438, 1113, 1839, 1933, 2068
BveI	ACCTGC	1 cut(s)	1435
Cac8I	GCNNGC	7 cut(s)	128, 1276, 1317, 1417, 1963, 1995, 2046
CciI	TCATGA	1 cut(s)	1510
CfoI	GCGC	2 cut(s)	298, 508
Cfr13I	GGNCC	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	1194
Csp6I	GTAC	4 cut(s)	1433, 1848, 2283, 2288
CviAII	CATG	3 cut(s)	943, 1017, 1511
CviQI	GTAC	4 cut(s)	1433, 1848, 2283, 2288
DdeI	CTNAG	2 cut(s)	15, 1410
DpnI	GATC	9 cut(s)	9, 92, 290, 349, 397, 444, 486, 1014, 1983
DpnII	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
DraI	TTTAAA	2 cut(s)	474, 2127
EaeI	YGGCCR	1 cut(s)	1216
Eam1104I	CTCTTC	3 cut(s)	83, 801, 2175
EarI	CTCTTC	3 cut(s)	83, 801, 2175
Ecl136II	GAGCTC	2 cut(s)	76, 100
Eco130I	CCWWGG	3 cut(s)	1016, 1156, 1772
Eco24I	GRGCYC	3 cut(s)	78, 102, 2222
Eco32I	GATATC	1 cut(s)	1297
Eco53kI	GAGCTC	2 cut(s)	76, 100
Eco57I	CTGAAG	4 cut(s)	642, 1001, 1083, 1404
Eco88I	CYCGRG	2 cut(s)	282, 2215
EcoICRI	GAGCTC	2 cut(s)	76, 100
EcoNI	CCTNNNNNAGG	1 cut(s)	1914
EcoRI	GAATTC	2 cut(s)	31, 1021
EcoRII	CCWGG	3 cut(s)	1608, 1648, 2197
EcoRV	GATATC	1 cut(s)	1297
EcoT14I	CCWWGG	3 cut(s)	1016, 1156, 1772
EcoT38I	GRGCYC	3 cut(s)	78, 102, 2222
ErhI	CCWWGG	3 cut(s)	1016, 1156, 1772
FaeI	CATG	3 cut(s)	946, 1020, 1514
FalI	AAGNNNNNCTT	6 cut(s)	907, 939, 1035, 1067, 2154, 2186
FaqI	GGGAC	1 cut(s)	1790
FatI	CATG	3 cut(s)	942, 1016, 1510
FauI	CCCGC	1 cut(s)	1222
FauNDI	CATATG	1 cut(s)	807
FblI	GTMKAC	2 cut(s)	60, 2249
Fnu4HI	GCNGC	9 cut(s)	165, 723, 1211, 1832, 1890, 1946, 1966, 1991, 2003
FokI	GGATG	6 cut(s)	515, 1034, 1139, 1156, 1665, 2161
FriOI	GRGCYC	3 cut(s)	78, 102, 2222
Fsp4HI	GCNGC	9 cut(s)	165, 723, 1211, 1832, 1890, 1946, 1966, 1991, 2003
FspBI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2273, 2317
GlaI	GCGC	2 cut(s)	297, 507
GluI	GCNGC	9 cut(s)	165, 723, 1211, 1832, 1890, 1946, 1966, 1991, 2003
GsuI	CTGGAG	3 cut(s)	86, 440, 1794
HaeIII	GGCC	5 cut(s)	140, 389, 1218, 1415, 1695
HapII	CCGG	2 cut(s)	135, 1215
HgaI	GACGC	1 cut(s)	1194
HhaI	GCGC	2 cut(s)	298, 508
Hin1I	GRCGYC	1 cut(s)	2036
Hin1II	CATG	3 cut(s)	946, 1020, 1514
Hin6I	GCGC	2 cut(s)	296, 506
HinP1I	GCGC	2 cut(s)	296, 506
HincII	GTYRAC	4 cut(s)	61, 344, 714, 1039
HindII	GTYRAC	4 cut(s)	61, 344, 714, 1039
HindIII	AAGCTT	1 cut(s)	921
HpaI	GTTAAC	1 cut(s)	1039
HpaII	CCGG	2 cut(s)	135, 1215
HphI	GGTGA	4 cut(s)	109, 124, 1043, 1682
Hpy166II	GTNNAC	9 cut(s)	61, 344, 714, 1039, 1241, 1393, 1523, 1924, 2250
Hpy188I	TCNGA	4 cut(s)	16, 395, 1102, 1132
Hpy8I	GTNNAC	9 cut(s)	61, 344, 714, 1039, 1241, 1393, 1523, 1924, 2250
Hpy99I	CGWCG	3 cut(s)	41, 62, 116
HpyCH4III	ACNGT	6 cut(s)	1715, 1847, 1928, 2074, 2206, 2287
HpyCH4IV	ACGT	3 cut(s)	552, 707, 2036
HpyF10VI	GCNNNNNNNGC	7 cut(s)	73, 170, 1999, 2105, 2114, 2226, 2235
HpyF3I	CTNAG	2 cut(s)	15, 1410
HpySE526I	ACGT	3 cut(s)	552, 707, 2036
Hsp92I	GRCGYC	1 cut(s)	2036
Hsp92II	CATG	3 cut(s)	946, 1020, 1514
HspAI	GCGC	2 cut(s)	296, 506
KspAI	GTTAAC	1 cut(s)	1039
Kzo9I	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
LguI	GCTCTTC	2 cut(s)	83, 801
LmnI	GCTCC	6 cut(s)	73, 105, 897, 1207, 1558, 1579
Lsp1109I	GCAGC	7 cut(s)	176, 734, 1222, 1901, 1977, 1977, 1989
LweI	GCATC	4 cut(s)	250, 493, 579, 1133
MaeI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2273, 2317
MaeII	ACGT	3 cut(s)	552, 707, 2036
MaeIII	GTNAC	5 cut(s)	115, 703, 1480, 2051, 2210
MalI	GATC	9 cut(s)	9, 92, 290, 349, 397, 444, 486, 1014, 1983
MboI	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
MfeI	CAATTG	1 cut(s)	1199
MflI	RGATCY	3 cut(s)	7, 395, 1981
MhlI	GDGCHC	6 cut(s)	78, 102, 175, 1321, 1584, 2222
MlyI	GAGTC	6 cut(s)	50, 56, 1103, 1614, 1793, 1801
MmeI	TCCRAC	1 cut(s)	1642
MslI	CAYNNNNRTG	1 cut(s)	1784
MspA1I	CMGCKG	4 cut(s)	167, 725, 1229, 1973
MspI	CCGG	2 cut(s)	135, 1215
MspR9I	CCNGG	5 cut(s)	136, 1215, 1610, 1650, 2199
MunI	CAATTG	1 cut(s)	1199
MvaI	CCWGG	3 cut(s)	1610, 1650, 2199
MwoI	GCNNNNNNNGC	7 cut(s)	73, 170, 1999, 2105, 2114, 2226, 2235
NciI	CCSGG	2 cut(s)	136, 1215
NcoI	CCATGG	1 cut(s)	1016
NdeI	CATATG	1 cut(s)	807
NdeII	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
NlaIII	CATG	3 cut(s)	946, 1020, 1514
NlaIV	GGNNCC	5 cut(s)	139, 429, 1614, 1770, 1944
NmuCI	GTSAC	2 cut(s)	115, 1480
PagI	TCATGA	1 cut(s)	1510
PciSI	GCTCTTC	2 cut(s)	83, 801
PfeI	GAWTC	4 cut(s)	278, 959, 1136, 1466
PflMI	CCANNNNNTGG	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	1648
PkrI	GCNGC	9 cut(s)	166, 724, 1212, 1833, 1891, 1947, 1967, 1992, 2004
PleI	GAGTC	6 cut(s)	49, 56, 1102, 1613, 1793, 1801
PpsI	GAGTC	6 cut(s)	49, 56, 1102, 1613, 1793, 1801
PshBI	ATTAAT	2 cut(s)	183, 459
Psp124BI	GAGCTC	2 cut(s)	78, 102
Psp6I	CCWGG	3 cut(s)	1608, 1648, 2197
PspGI	CCWGG	3 cut(s)	1608, 1648, 2197
PspN4I	GGNNCC	5 cut(s)	139, 429, 1614, 1770, 1944
PspPI	GGNCC	1 cut(s)	138
PsrI	GAACNNNNNNTAC	2 cut(s)	1425, 1457
PstI	CTGCAG	1 cut(s)	1432
PsuI	RGATCY	3 cut(s)	7, 395, 1981
PvuII	CAGCTG	3 cut(s)	167, 725, 1973
RsaI	GTAC	4 cut(s)	1434, 1849, 2284, 2289
RsaNI	GTAC	4 cut(s)	1433, 1848, 2283, 2288
RseI	CAYNNNNRTG	1 cut(s)	1784
SacI	GAGCTC	2 cut(s)	78, 102
SalI	GTCGAC	1 cut(s)	59
SapI	GCTCTTC	2 cut(s)	83, 801
SatI	GCNGC	9 cut(s)	165, 723, 1211, 1832, 1890, 1946, 1966, 1991, 2003
Sau3AI	GATC	9 cut(s)	7, 90, 288, 347, 395, 442, 484, 1012, 1981
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	6 cut(s)	50, 56, 1103, 1614, 1793, 1801
ScrFI	CCNGG	5 cut(s)	136, 1215, 1610, 1650, 2199
SduI	GDGCHC	6 cut(s)	78, 102, 175, 1321, 1584, 2222
SfaNI	GCATC	4 cut(s)	250, 493, 579, 1133
SfcI	CTRYAG	2 cut(s)	1002, 1428
SmiI	ATTTAAAT	1 cut(s)	2127
SmiMI	CAYNNNNRTG	1 cut(s)	1784
SmlI	CTYRAG	1 cut(s)	1914
SmoI	CTYRAG	1 cut(s)	1914
SsiI	CCGC	7 cut(s)	85, 592, 643, 841, 1229, 1832, 1946
SspI	AATATT	2 cut(s)	187, 577
SspMI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2273, 2317
SstI	GAGCTC	2 cut(s)	78, 102
StyD4I	CCNGG	5 cut(s)	134, 1213, 1608, 1648, 2197
StyI	CCWWGG	3 cut(s)	1016, 1156, 1772
SwaI	ATTTAAAT	1 cut(s)	2127
TaaI	ACNGT	6 cut(s)	1715, 1847, 1928, 2074, 2206, 2287
TaiI	ACGT	3 cut(s)	555, 710, 2039
TaqI	TCGA	5 cut(s)	39, 60, 93, 866, 1873
TatI	WGTACW	3 cut(s)	1847, 2282, 2287
TauI	GCSGC	2 cut(s)	1834, 1948
TfiI	GAWTC	4 cut(s)	278, 959, 1136, 1466
TscAI	CASTG	6 cut(s)	298, 445, 1113, 1846, 1933, 2068
TseFI	GTSAC	2 cut(s)	115, 1480
TseI	GCWGC	7 cut(s)	164, 722, 1210, 1889, 1965, 1990, 2002
Tsp45I	GTSAC	2 cut(s)	115, 1480
TspDTI	ATGAA	7 cut(s)	744, 794, 959, 1011, 1158, 1377, 1589
TspGWI	ACGGA	5 cut(s)	25, 232, 416, 477, 1583
TspRI	CASTG	6 cut(s)	298, 445, 1113, 1846, 1933, 2068
Van91I	CCANNNNNTGG	1 cut(s)	160
VspI	ATTAAT	2 cut(s)	183, 459
XagI	CCTNNNNNAGG	1 cut(s)	1914
XapI	RAATTY	3 cut(s)	31, 652, 1021
XbaI	TCTAGA	1 cut(s)	1984
XmaJI	CCTAGG	1 cut(s)	1156
XmiI	GTMKAC	2 cut(s)	60, 2249
XspI	CTAG	8 cut(s)	201, 545, 1157, 1455, 1985, 2139, 2273, 2317
ZraI	GACGTC	1 cut(s)	2037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.