Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009604

Physical Location & Seq

Genomic Coordinates Forward (+)

37533173 .. 37533896

Gene Structure 724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0233000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAAATATTCCAACAGGTGTTGAAGGAACTCTATCTCAATGATTCTGACTTTGCTCAGATTCATGAACTCCACACCAAGGCATTTAAGATGACTCAGAATGGACAATCCATGCCCATCATTTTTGCTACTCTGGAGAACATTTTGTTGGAGATTGACCAGAGGCGTCCCAAAAAAATGAAGACTACTGATGATATCAAGCTCTATAATGAGGAGAAGGATTTGTTAAGGGTGCATATATTTCTAAATGGGCTTGATGCCAGGCATGCCAGTGCCAAAGGTGAATTGTTAAGGCTTGTTGCTCATCTTTCCCTTGTTGAAGCTTTTGCCTATATTCGGAAGGATGAGGCTCAACTGGAGAGTGTTAAGGCAATTCACTCTGAATTGTCTAGACTCACAGTTCAGTCTAAGGCTACACCACCCAAGTATGTGCCACCACATACACAGCAGCTTCATACTCAACCTAGTTCTCCATCACCCATCGGCACTCGTCCTATTTGTACCTTCTGCAAACTGCCCGGGCACATTAGAGCCAAATGTCACAAGCTGAATGAGTGTCCTACATCTTGGAAGAAACCGGTGCCTAACCAACAAGAACGTGTTGCAGCTCACTTGGTTCAAAATCTTGATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

211

Amino Acids

24.17

Weight (kDa)

9.23

Isoelectric Point (pI)

55.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02560 AT4G02560
fragaria_vesca	FvH4_2g25100 FvH4_2g25100 FvH4_2g25100
malus_domestica	MD03G1284300.v1.1 MD11G1302000.v1.1
prunus_persica	Prupe.8G255600_v2.0.a1 Prupe.8G255600_v2.0.a1
pyrus_communis	pycom03g22510 pycom11g26460
rosa_chinensis	RchiOBHm_Chr6g0293161
rosa_laevigata	RLG00000011970
rosa_multiflora	Rmu_sc0014786.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174400
rosa_rugosa	Rorug06G0233000 Rorug06G0233100
rosa_samantha	Rh6AG345700 Rh6BG353500 Rh6CG359900 Rh6DG346300
rosa_wichuraiana	Rw6G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	580
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	502
AfiI	CCNNNNNNNGG	2 cut(s)	79, 336
AflIII	ACRYGT	1 cut(s)	598
AgeI	ACCGGT	1 cut(s)	577
AgsI	TTSAA	3 cut(s)	25, 320, 620
AjnI	CCWGG	1 cut(s)	260
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	5 cut(s)	202, 323, 451, 547, 608
AluI	AGCT	5 cut(s)	202, 323, 451, 547, 608
Ama87I	CYCGRG	1 cut(s)	518
ApeKI	GCWGC	2 cut(s)	448, 605
AsiGI	ACCGGT	1 cut(s)	577
Asp700I	GAANNNNTTC	1 cut(s)	8
AsuC2I	CCSGG	2 cut(s)	519, 520
AsuHPI	GGTGA	2 cut(s)	293, 468
AvaI	CYCGRG	1 cut(s)	518
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	460, 617
BccI	CCATC	3 cut(s)	125, 481, 488
BciT130I	CCWGG	1 cut(s)	262
BcnI	CCSGG	2 cut(s)	519, 520
BfaI	CTAG	2 cut(s)	390, 465
BisI	GCNGC	2 cut(s)	449, 606
BlsI	GCNGC	2 cut(s)	450, 607
Bme1390I	CCNGG	3 cut(s)	262, 519, 520
BmeT110I	CYCGRG	1 cut(s)	518
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	3 cut(s)	262, 519, 520
BmsI	GCATC	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	188
BpmI	CTGGAG	2 cut(s)	155, 377
BpuMI	CCSGG	2 cut(s)	519, 520
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	78, 518
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 336
Bse118I	RCCGGY	1 cut(s)	577
Bse1I	ACTGG	2 cut(s)	270, 360
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	2 cut(s)	78, 518
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	2 cut(s)	79, 336
BseMII	CTCAG	2 cut(s)	71, 110
BseNI	ACTGG	2 cut(s)	270, 360
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	460, 617
BshNI	GGYRCC	1 cut(s)	580
BshTI	ACCGGT	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	519, 578
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	79, 336
BsmFI	GGGAC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	525
BspCNI	CTCAG	2 cut(s)	70, 109
BspHI	TCATGA	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	582
BspT107I	GGYRCC	1 cut(s)	580
BsrFI	RCCGGY	1 cut(s)	577
BsrI	ACTGG	2 cut(s)	270, 360
BssAI	RCCGGY	1 cut(s)	577
BssECI	CCNNGG	2 cut(s)	78, 518
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	400
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	3 cut(s)	57, 96, 408
BstF5I	GGATG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	262
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	260, 517, 518
BstSLI	GKGCMC	1 cut(s)	525
BstV1I	GCAGC	2 cut(s)	460, 617
BstV2I	GAAGAC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	577
Cfr9I	CCCGGG	1 cut(s)	518
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	501
CspAI	ACCGGT	1 cut(s)	577
CviAII	CATG	3 cut(s)	65, 112, 266
CviQI	GTAC	1 cut(s)	501
DdeI	CTNAG	3 cut(s)	57, 96, 408
Eco130I	CCWWGG	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	260
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	68, 115, 269
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	3 cut(s)	64, 111, 265
Fnu4HI	GCNGC	2 cut(s)	449, 606
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	2 cut(s)	449, 606
FspBI	CTAG	2 cut(s)	390, 465
GluI	GCNGC	2 cut(s)	449, 606
GsuI	CTGGAG	2 cut(s)	155, 377
HapII	CCGG	2 cut(s)	519, 578
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	3 cut(s)	68, 115, 269
HindIII	AAGCTT	1 cut(s)	321
HinfI	GANTC	4 cut(s)	44, 61, 94, 393
HpaII	CCGG	2 cut(s)	519, 578
HphI	GGTGA	2 cut(s)	293, 468
Hpy188I	TCNGA	5 cut(s)	49, 60, 99, 339, 382
Hpy188III	TCNNGA	4 cut(s)	65, 134, 390, 626
HpyAV	CCTTC	4 cut(s)	19, 211, 334, 514
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	3 cut(s)	235, 510, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	3 cut(s)	57, 96, 408
HpySE526I	ACGT	1 cut(s)	598
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	3 cut(s)	68, 115, 269
LpnPI	CCDG	9 cut(s)	2, 119, 173, 247, 274, 283, 341, 532, 591
Lsp1109I	GCAGC	2 cut(s)	460, 617
LweI	GCATC	1 cut(s)	247
MaeI	CTAG	2 cut(s)	390, 465
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	1 cut(s)	539
MboII	GAAGA	2 cut(s)	193, 583
MhlI	GDGCHC	1 cut(s)	525
MluCI	AATT	3 cut(s)	284, 372, 383
MlyI	GAGTC	2 cut(s)	88, 387
MmeI	TCCRAC	2 cut(s)	37, 129
MnlI	CCTC	3 cut(s)	156, 205, 340
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	5 cut(s)	87, 227, 290, 366, 634
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	2 cut(s)	519, 578
MspR9I	CCNGG	3 cut(s)	262, 519, 520
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	266
NciI	CCSGG	2 cut(s)	519, 520
NlaIII	CATG	3 cut(s)	68, 115, 269
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	539
NspI	RCATGY	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	269
PagI	TCATGA	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	2 cut(s)	44, 61
PinAI	ACCGGT	1 cut(s)	577
PkrI	GCNGC	2 cut(s)	450, 607
PleI	GAGTC	2 cut(s)	88, 387
PpsI	GAGTC	2 cut(s)	88, 387
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	582
RsaI	GTAC	1 cut(s)	502
RsaNI	GTAC	1 cut(s)	501
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	5 cut(s)	87, 227, 290, 366, 634
SatI	GCNGC	2 cut(s)	449, 606
SchI	GAGTC	2 cut(s)	88, 387
ScrFI	CCNGG	3 cut(s)	262, 519, 520
SduI	GDGCHC	1 cut(s)	525
SfaNI	GCATC	1 cut(s)	247
SmaI	CCCGGG	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	270
SphI	GCATGC	1 cut(s)	269
SrfI	GCCCGGGC	1 cut(s)	520
Sse9I	AATT	3 cut(s)	284, 372, 383
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	2 cut(s)	390, 465
StyD4I	CCNGG	3 cut(s)	260, 517, 518
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	601
TasI	AATT	3 cut(s)	284, 372, 383
TfiI	GAWTC	2 cut(s)	44, 61
Tru1I	TTAA	5 cut(s)	87, 227, 290, 366, 634
Tru9I	TTAA	5 cut(s)	87, 227, 290, 366, 634
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	539
TseI	GCWGC	2 cut(s)	448, 605
Tsp45I	GTSAC	1 cut(s)	539
TspDTI	ATGAA	5 cut(s)	17, 53, 81, 194, 443
TspMI	CCCGGG	1 cut(s)	518
TspRI	CASTG	1 cut(s)	277
XbaI	TCTAGA	1 cut(s)	389
XceI	RCATGY	1 cut(s)	269
XmaI	CCCGGG	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	2 cut(s)	390, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.