Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009604

Physical Location & Seq

Genomic Coordinates Reverse (-)

22620096 .. 22626159

Gene Structure 6064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22510.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2940 bp

ATGGAGAATCCCTCGGTGGAGATGGAGATTGGGACATCTGCGGAGTCCTTGGGGAAGTTCTTGGACTCGCAGAGGGAGCTTTTCCACAGCCAGATCGATCAGCTCCAGAGAATCGTCGGCACCCAGTGCAAACTCACCGGCGTCAATCCTCTCTCCCAAGAAATGGCAGCTGGTGCTCTTTCAATTAAGATTGGAAAAAGACCTAGAGATTTGTTAAATCCAAAGGCTATAAAGTATATGCAATCTATTTTTTCGATTAAAGATACTATTAGTAAGAAGGAATCTCGGGAGCTCAGTGCTGTATTCGGCGTTACAGTCACACAGGTTCGTGATTTCTTTAACAGTCAACGGTCGAGAGTCAGAAAACTAGTCCAGTTGTCAAGGGAAAAGGCCTTGAAATCCGGTGAACATGAAGATTTGCGCGATGGGGTCTCAACAAGCCCTGATTCTTTGATACCAAGTGATCCAGTTCCCTTGAACTCTGTTGGTCCCTCCAATGTTGACGACGCACCATCATGCTCAACGCAAGATAATGCTCTTTCTGGATTAGATGACTTAGATAAACGTTTCGTAGAAGATATTTTCAACTTGATGCGGAAAGAAGAAACATTTTCTGGGCAAGTGAAACTGATGGAGTGGATTATGCGGATAGAAAATTCTTCAGTATTATGTTGGTTTTTAACTAATGGTGGTGTAATGATTTTAGTAACATGGTTGAGTCAAGCTGCTGTCGAAGAACAAACAAGTGTTCTACTTGTTATCTTAAAGGTTCTTTGTCATTTGCCTCTTCATAAAGCTCTTCCTTTGCATATGTCAGCCGTACTGCAAAGTGTTAATCGACTGCGGTTTTACAGGACACCAGACATATCGAACAGGGCAAGAGTTTTGCTATCAAGGTGGAGCAAGCTATTAGCGAGAAGCCAAGCTATGAAGAAACCAAATGGCATTAAAACGTCTAGTGATTCGAAAGAGTTAGTAATTCTGAAGCAGAGTATCGATGAAGTTATGGGCGATTCAGAATCATGGAAGTCAAATATGGATATTTCTGAAGACATCCTTGGAACACCTTTTGAAGGTGCAGAAAACAGGAAATTAGAGGCCTCAGAACCCTTGAAGTTATTGACAGCATCACCAGATGAGTCAAATAAGAAGAACATCTTGGGTGTATCTTCATCTCAATTTCGTGAGCGCAGAAAAGTTCAGTTGGTGGAACAGCCCGGCCAATCAGCTGGGAGAAGTGTGCCGGCCACAAGAACAACAACTGTGAGTCAGGCTCGTCCAATGTCTGCTGATGATATCCAAAAAGTAAAAATGCGAGCACAATTTATGCAGAGCAAGTATGGGAAATCTCGTTCATCCCATGAAAATAAAGAATTGAAGACTGAAGGTGTGGACAAACTTACAATCTCTCAGGCAAGCATTTTGCCCATGGTACCCAAAGTTCCAATTCGGTCTAATATTGAGGAACCCAAGAAACCCGCGACAAATCCTTTGAAAGAGAGGGAAATTCCTAATAAGCCCGAAACTTCTCTTGCCCCGAAGCGGAGTCTGGATTTGAAGGAGCCCATATTAGAGAAGTGCCCAAGAATCCAGATCCCATGGAAGATGCCTCCAGAAATAAAACTCGATCCTTCGTGGAGCCTTGGTGGTGGTGAATATTGCAAAGAAATTGAAGTCCAGAGAAACAGAAACCGCCGTGAGAAGGAAACCATCTACCGGACAGTTCAGGAGATACCGTCTAACCCGAAGGAACCATGGGACATTGAAATGGATTATGATGATTCATTAACACCAGAAATACCAATCGAACAGCCGCCTGATGTTGCTGATACCACTGAAACACAGGCTTCCCATAACAGAGAAGTATATAATGCAGAAACAATGGTCGTTCCTTCTCAAGGAGCAAACAATGTCGCTTCCTTTCCTCCGGCCTTATCTCAAATTAATAACGCAAGCGCAGCCGAACCAGATCTAGAACTGCTTGCCGTACTGCTAAAAAATCCAGAACTGGTGTTTGCTTTGACTTCTGGCGATGCTGCTAACTTGTCGAGCGAGGACACAGTAAAATTGCTGGATATGATAAAGTCTGGTGGGGCTGGTGTTGCTGGTAATGTAAATGGTTTAGGTAGAAAAACGGAGAGGGTCGAAGTTTCTCTTCCATCCCCGACGCCTTCAAGCAACCCTGGAACGAGTGGATGGAAGGGAGATGCTGGAAGGAATGCATTTCCCCAACAGATGCCGCAGGTTTCATCTGCTCATCACATTATTCCGCCGCAACGGCTATCAACTTCCCAACCGGCAGTACCTTCATACTCACCAGATTATCATCGTATGCAATCACCAGCCTCTGAGATGGCTTTAACCATGAAGAACACGCACTTCCACAACGTATCAAACACGGCCGTGCCTCCGGTTTGGGGTGAAGGCACGATCAATGTCGAACGAGCTCCCCTATCTAACTCTTATAATGTAGCAGAACGGCAGCAGCCCTTGTTTTCCACTCCGGCAAGGCAACAAAGACAGCCGCAGCCAGTACAACAATCCCCTTTTTCTGAACCTCACATTCCTATGTACACGCCTAAACAGCCGATGGGCAAACCCGGCCCTCCATCCGATTCGTGGAGAGCCAGGCAGGATTTGCCTTCAAATTACCATTACATAGAGAACCCAAATCAGTATAATGCTTCGTATGGAGGGCATTTGCAGGCACACCTGTTGCCAGGTCCGTCTTGGGAAGGAAATGAACATGTTGGTGGCCAACAAGATTTCCAATCGTGGAGTCCGGATAATAGTCCGAGTAGAAATCCCGGGTACATGTACGGAAGAGAACCCAGAACAAACCCGGGACAGGATTACAGGTCGAGGGGAAGGAATCCTGCCGGATACCGGGACCATAATAGGCAGCAGGGAAACAGATGGCCTAAGCGCGGCGGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010228 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

980

Amino Acids

109.0

Weight (kDa)

8.64

Isoelectric Point (pI)

59.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02560 AT4G02560
fragaria_vesca	FvH4_2g25100 FvH4_2g25100 FvH4_2g25100
malus_domestica	MD03G1284300.v1.1 MD11G1302000.v1.1
prunus_persica	Prupe.8G255600_v2.0.a1 Prupe.8G255600_v2.0.a1
pyrus_communis	pycom03g22510 pycom11g26460
rosa_chinensis	RchiOBHm_Chr6g0293161
rosa_laevigata	RLG00000011970
rosa_multiflora	Rmu_sc0014786.1_g000002
rosa_roxburghii	Rroxscaffold_7G00174400
rosa_rugosa	Rorug06G0233000 Rorug06G0233100
rosa_samantha	Rh6AG345700 Rh6BG353500 Rh6CG359900 Rh6DG346300
rosa_wichuraiana	Rw6G030130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2466
Acc36I	ACCTGC	1 cut(s)	2233
Acc65I	GGTACC	1 cut(s)	1432
AccB1I	GGYRCC	2 cut(s)	119, 1432
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccII	CGCG	3 cut(s)	423, 1481, 2928
AccIII	TCCGGA	1 cut(s)	2782
AclI	AACGTT	1 cut(s)	565
AclWI	GGATC	3 cut(s)	458, 1588, 1622
AcoI	YGGCCR	4 cut(s)	1219, 1245, 2400, 2755
AcsI	RAATTY	2 cut(s)	655, 1506
AcuI	CTGAAG	4 cut(s)	645, 1004, 1068, 1404
AcyI	GRCGYC	2 cut(s)	141, 2168
AdeI	CACNNNGTG	1 cut(s)	126
AfaI	GTAC	8 cut(s)	822, 1434, 1989, 2304, 2535, 2573, 2813, 2819
AflIII	ACRYGT	2 cut(s)	2746, 2814
AhlI	ACTAGT	1 cut(s)	367
AjnI	CCWGG	3 cut(s)	2182, 2627, 2719
AjuI	GAANNNNNNNTTGG	4 cut(s)	1041, 1073, 1142, 1174
AleI	CACNNNNGTG	1 cut(s)	2402
AloI	GAACNNNNNNTCC	2 cut(s)	1336, 1368
Alw21I	GWGCWC	4 cut(s)	178, 294, 1321, 2449
Alw26I	GTCTC	1 cut(s)	436
AlwI	GGATC	3 cut(s)	458, 1588, 1622
AlwNI	CAGNNNCTG	1 cut(s)	2348
Ama87I	CYCGRG	3 cut(s)	285, 2807, 2842
Aor13HI	TCCGGA	1 cut(s)	2782
AoxI	GGCC	9 cut(s)	390, 1098, 1219, 1245, 1929, 2400, 2602, 2755, 2918
ApeKI	GCWGC	8 cut(s)	167, 725, 1958, 2036, 2482, 2485, 2527, 2902
ApoI	RAATTY	2 cut(s)	655, 1506
ArsI	GACNNNNNNTTYG	2 cut(s)	1474, 1506
AseI	ATTAAT	1 cut(s)	1944
Asp718I	GGTACC	1 cut(s)	1432
AspLEI	GCGC	4 cut(s)	423, 1191, 1958, 2928
AspS9I	GGNCC	4 cut(s)	488, 2603, 2723, 2890
AsuC2I	CCSGG	7 cut(s)	1218, 2601, 2808, 2809, 2843, 2844, 2888
AsuHPI	GGTGA	7 cut(s)	127, 416, 1122, 1664, 2307, 2331, 2432
AsuII	TTCGAA	1 cut(s)	965
AvaI	CYCGRG	3 cut(s)	285, 2807, 2842
AvaII	GGWCC	3 cut(s)	488, 2723, 2890
BaeGI	GKGCMC	1 cut(s)	1583
BalI	TGGCCA	1 cut(s)	2757
BanI	GGYRCC	2 cut(s)	119, 1432
BanII	GRGCYC	3 cut(s)	294, 1566, 2449
BbsI	GAAGAC	2 cut(s)	1056, 1385
Bbv12I	GWGCWC	4 cut(s)	178, 294, 1321, 2449
BbvI	GCAGC	8 cut(s)	179, 712, 1970, 2023, 2494, 2497, 2539, 2914
BceAI	ACGGC	7 cut(s)	803, 1680, 1970, 2294, 2387, 2415, 2495
BciT130I	CCWGG	3 cut(s)	2184, 2629, 2721
BciVI	GTATCC	1 cut(s)	2876
BcnI	CCSGG	7 cut(s)	1218, 2601, 2808, 2809, 2843, 2844, 2888
BcoDI	GTCTC	1 cut(s)	436
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	4 cut(s)	204, 368, 957, 1973
BfuAI	ACCTGC	1 cut(s)	2233
BfuI	GTATCC	1 cut(s)	2876
BglI	GCCNNNNNGGC	1 cut(s)	2278
BglII	AGATCT	1 cut(s)	1969
Bme18I	GGWCC	3 cut(s)	488, 2723, 2890
BmeT110I	CYCGRG	3 cut(s)	285, 2807, 2842
BmgT120I	GGNCC	4 cut(s)	488, 2603, 2723, 2890
BmiI	GGNNCC	8 cut(s)	121, 490, 1434, 1467, 1563, 1640, 1752, 2891
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	6 cut(s)	582, 1136, 1596, 2023, 2197, 2226
BmuI	ACTGGG	1 cut(s)	118
BpiI	GAAGAC	2 cut(s)	1056, 1385
BplI	GAGNNNNNCTC	3 cut(s)	28, 1258, 1290
BpmI	CTGGAG	2 cut(s)	89, 1596
Bpu10I	CCTNAGC	1 cut(s)	2922
Bpu14I	TTCGAA	1 cut(s)	965
BpuEI	CTTGAG	1 cut(s)	1881
BpuMI	CCSGG	7 cut(s)	1218, 2601, 2808, 2809, 2843, 2844, 2888
Bsa29I	ATCGAT	2 cut(s)	96, 996
BsaBI	GATNNNNATC	1 cut(s)	2325
BsaHI	GRCGYC	2 cut(s)	141, 2168
BsaI	GGTCTC	1 cut(s)	436
BsaWI	WCCGGW	4 cut(s)	401, 1716, 2410, 2782
BsaXI	ACNNNNNCTCC	4 cut(s)	1630, 1660, 1721, 1751
Bse118I	RCCGGY	3 cut(s)	137, 1243, 2296
Bse1I	ACTGG	5 cut(s)	124, 373, 467, 2013, 2531
Bse8I	GATNNNNATC	1 cut(s)	2325
BseAI	TCCGGA	1 cut(s)	2782
BseBI	CCWGG	3 cut(s)	2184, 2629, 2721
BseCI	ATCGAT	2 cut(s)	96, 996
BseGI	GGATG	5 cut(s)	1053, 1355, 2159, 2201, 2609
BseJI	GATNNNNATC	1 cut(s)	2325
BseMII	CTCAG	4 cut(s)	307, 1116, 1424, 2340
BseNI	ACTGG	5 cut(s)	124, 373, 467, 2013, 2531
BseSI	GKGCMC	1 cut(s)	1583
BseX3I	CGGCCG	1 cut(s)	2400
BseXI	GCAGC	8 cut(s)	179, 712, 1970, 2023, 2494, 2497, 2539, 2914
BseYI	CCCAGC	1 cut(s)	1229
BsgI	GTGCAG	1 cut(s)	1098
Bsh1236I	CGCG	3 cut(s)	423, 1481, 2928
Bsh1285I	CGRYCG	2 cut(s)	353, 2403
BshFI	GGCC	9 cut(s)	392, 1100, 1221, 1247, 1931, 2402, 2604, 2757, 2920
BshNI	GGYRCC	2 cut(s)	119, 1432
BshVI	ATCGAT	2 cut(s)	96, 996
BsiEI	CGRYCG	2 cut(s)	353, 2403
BsiHKAI	GWGCWC	4 cut(s)	178, 294, 1321, 2449
BsiHKCI	CYCGRG	3 cut(s)	285, 2807, 2842
BslFI	GGGAC	5 cut(s)	46, 474, 1772, 2859, 2903
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	5 cut(s)	46, 474, 1772, 2859, 2903
BsmI	GAATGC	1 cut(s)	2224
BsnI	GGCC	9 cut(s)	392, 1100, 1221, 1247, 1931, 2402, 2604, 2757, 2920
Bso31I	GGTCTC	1 cut(s)	436
BsoBI	CYCGRG	3 cut(s)	285, 2807, 2842
Bsp119I	TTCGAA	1 cut(s)	965
Bsp1286I	GDGCHC	6 cut(s)	178, 294, 1321, 1566, 1583, 2449
Bsp13I	TCCGGA	1 cut(s)	2782
Bsp1407I	TGTACA	1 cut(s)	2571
Bsp143I	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2430
Bsp19I	CCATGG	3 cut(s)	1428, 1598, 1754
BspANI	GGCC	9 cut(s)	392, 1100, 1221, 1247, 1931, 2402, 2604, 2757, 2920
BspCNI	CTCAG	4 cut(s)	306, 1115, 1423, 2341
BspDI	ATCGAT	2 cut(s)	96, 996
BspEI	TCCGGA	1 cut(s)	2782
BspFNI	CGCG	3 cut(s)	423, 1481, 2928
BspLI	GGNNCC	8 cut(s)	121, 490, 1434, 1467, 1563, 1640, 1752, 2891
BspMI	ACCTGC	1 cut(s)	2233
BspPI	GGATC	3 cut(s)	458, 1588, 1622
BspQI	GCTCTTC	1 cut(s)	804
BspT104I	TTCGAA	1 cut(s)	965
BspT107I	GGYRCC	2 cut(s)	119, 1432
BspTNI	GGTCTC	1 cut(s)	436
BsrFI	RCCGGY	3 cut(s)	137, 1243, 2296
BsrGI	TGTACA	1 cut(s)	2571
BsrI	ACTGG	5 cut(s)	124, 373, 467, 2013, 2531
BssAI	RCCGGY	3 cut(s)	137, 1243, 2296
BssMI	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2430
BssNI	GRCGYC	2 cut(s)	141, 2168
BssT1I	CCWWGG	6 cut(s)	48, 1057, 1428, 1598, 1642, 1754
Bst2UI	CCWGG	3 cut(s)	2184, 2629, 2721
Bst4CI	ACNGT	7 cut(s)	316, 344, 351, 1264, 1723, 1737, 2062
Bst6I	CTCTTC	4 cut(s)	792, 804, 2160, 2818
BstACI	GRCGYC	2 cut(s)	141, 2168
BstAPI	GCANNNNNTGC	3 cut(s)	126, 173, 2638
BstAUI	TGTACA	1 cut(s)	2571
BstBI	TTCGAA	1 cut(s)	965
BstC8I	GCNNGC	7 cut(s)	905, 1245, 1317, 1417, 1954, 1983, 2706
BstDEI	CTNAG	6 cut(s)	293, 556, 1102, 1410, 2349, 2922
BstDSI	CCRYGG	3 cut(s)	1428, 1598, 1754
BstENI	CCTNNNNNAGG	2 cut(s)	1071, 1896
BstF5I	GGATG	5 cut(s)	1053, 1355, 2159, 2201, 2609
BstFNI	CGCG	3 cut(s)	423, 1481, 2928
BstHHI	GCGC	4 cut(s)	423, 1191, 1958, 2928
BstKTI	GATC	7 cut(s)	96, 100, 466, 1596, 1630, 1972, 2433
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2430
BstMCI	CGRYCG	2 cut(s)	353, 2403
BstNI	CCWGG	3 cut(s)	2184, 2629, 2721
BstNSI	RCATGY	2 cut(s)	2750, 2818
BstSLI	GKGCMC	1 cut(s)	1583
BstUI	CGCG	3 cut(s)	423, 1481, 2928
BstV1I	GCAGC	8 cut(s)	179, 712, 1970, 2023, 2494, 2497, 2539, 2914
BstV2I	GAAGAC	2 cut(s)	1056, 1385
BstX2I	RGATCY	2 cut(s)	1593, 1969
BstXI	CCANNNNNNTGG	1 cut(s)	1229
BstYI	RGATCY	2 cut(s)	1593, 1969
BstZI	CGGCCG	1 cut(s)	2400
Bsu15I	ATCGAT	2 cut(s)	96, 996
BsuI	GTATCC	1 cut(s)	2876
BsuRI	GGCC	9 cut(s)	392, 1100, 1221, 1247, 1931, 2402, 2604, 2757, 2920
BsuTUI	ATCGAT	2 cut(s)	96, 996
BtgI	CCRYGG	3 cut(s)	1428, 1598, 1754
BtgZI	GCGATG	2 cut(s)	438, 2046
BtsCI	GGATG	5 cut(s)	1053, 1355, 2159, 2201, 2609
BtsIMutI	CAGTG	3 cut(s)	131, 301, 1833
BveI	ACCTGC	1 cut(s)	2233
Cac8I	GCNNGC	7 cut(s)	905, 1245, 1317, 1417, 1954, 1983, 2706
CaiI	CAGNNNCTG	1 cut(s)	2348
CfoI	GCGC	4 cut(s)	423, 1191, 1958, 2928
Cfr10I	RCCGGY	3 cut(s)	137, 1243, 2296
Cfr13I	GGNCC	4 cut(s)	488, 2603, 2723, 2890
Cfr9I	CCCGGG	2 cut(s)	2807, 2842
ClaI	ATCGAT	2 cut(s)	96, 996
CseI	GACGC	3 cut(s)	130, 515, 2176
Csp6I	GTAC	8 cut(s)	821, 1433, 1988, 2303, 2534, 2572, 2812, 2818
CviQI	GTAC	8 cut(s)	821, 1433, 1988, 2303, 2534, 2572, 2812, 2818
DdeI	CTNAG	6 cut(s)	293, 556, 1102, 1410, 2349, 2922
DpnI	GATC	7 cut(s)	95, 99, 465, 1595, 1629, 1971, 2432
DpnII	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2430
DraIII	CACNNNGTG	1 cut(s)	126
EaeI	YGGCCR	4 cut(s)	1219, 1245, 2400, 2755
EagI	CGGCCG	1 cut(s)	2400
Eam1104I	CTCTTC	4 cut(s)	792, 804, 2160, 2818
EarI	CTCTTC	4 cut(s)	792, 804, 2160, 2818
EciI	GGCGGA	1 cut(s)	2259
Ecl136II	GAGCTC	2 cut(s)	292, 2447
EclXI	CGGCCG	1 cut(s)	2400
Eco130I	CCWWGG	6 cut(s)	48, 1057, 1428, 1598, 1642, 1754
Eco147I	AGGCCT	2 cut(s)	392, 1100
Eco24I	GRGCYC	3 cut(s)	294, 1566, 2449
Eco31I	GGTCTC	1 cut(s)	436
Eco32I	GATATC	1 cut(s)	1297
Eco47I	GGWCC	3 cut(s)	488, 2723, 2890
Eco52I	CGGCCG	1 cut(s)	2400
Eco53kI	GAGCTC	2 cut(s)	292, 2447
Eco57I	CTGAAG	4 cut(s)	645, 1004, 1068, 1404
Eco88I	CYCGRG	3 cut(s)	285, 2807, 2842
EcoICRI	GAGCTC	2 cut(s)	292, 2447
EcoNI	CCTNNNNNAGG	2 cut(s)	1071, 1896
EcoRII	CCWGG	3 cut(s)	2182, 2627, 2719
EcoRV	GATATC	1 cut(s)	1297
EcoT14I	CCWWGG	6 cut(s)	48, 1057, 1428, 1598, 1642, 1754
EcoT22I	ATGCAT	1 cut(s)	2224
EcoT38I	GRGCYC	3 cut(s)	294, 1566, 2449
ErhI	CCWWGG	6 cut(s)	48, 1057, 1428, 1598, 1642, 1754
FalI	AAGNNNNNCTT	6 cut(s)	1041, 1073, 1142, 1174, 2139, 2171
FaqI	GGGAC	5 cut(s)	46, 474, 1772, 2859, 2903
FauI	CCCGC	1 cut(s)	1486
FauNDI	CATATG	1 cut(s)	810
FokI	GGATG	5 cut(s)	1040, 1342, 2146, 2208, 2596
FriOI	GRGCYC	3 cut(s)	294, 1566, 2449
FspBI	CTAG	4 cut(s)	204, 368, 957, 1973
GlaI	GCGC	4 cut(s)	422, 1190, 1957, 2927
GsaI	CCCAGC	1 cut(s)	1233
GsuI	CTGGAG	2 cut(s)	89, 1596
HaeIII	GGCC	9 cut(s)	392, 1100, 1221, 1247, 1931, 2402, 2604, 2757, 2920
HgaI	GACGC	3 cut(s)	130, 515, 2176
HhaI	GCGC	4 cut(s)	423, 1191, 1958, 2928
Hin1I	GRCGYC	2 cut(s)	141, 2168
Hin6I	GCGC	4 cut(s)	421, 1189, 1956, 2926
HinP1I	GCGC	4 cut(s)	421, 1189, 1956, 2926
HincII	GTYRAC	2 cut(s)	347, 502
HindII	GTYRAC	2 cut(s)	347, 502
HphI	GGTGA	7 cut(s)	127, 416, 1122, 1664, 2307, 2331, 2432
Hpy166II	GTNNAC	5 cut(s)	347, 407, 502, 1393, 2574
Hpy188I	TCNGA	9 cut(s)	362, 984, 1018, 1048, 1105, 2350, 2554, 2614, 2796
Hpy8I	GTNNAC	5 cut(s)	347, 407, 502, 1393, 2574
Hpy99I	CGWCG	3 cut(s)	119, 509, 2170
HpyCH4III	ACNGT	7 cut(s)	316, 344, 351, 1264, 1723, 1737, 2062
HpyCH4IV	ACGT	3 cut(s)	565, 953, 2388
HpyF3I	CTNAG	6 cut(s)	293, 556, 1102, 1410, 2349, 2922
HpySE526I	ACGT	3 cut(s)	565, 953, 2388
Hsp92I	GRCGYC	2 cut(s)	141, 2168
HspAI	GCGC	4 cut(s)	421, 1189, 1956, 2926
Kpn2I	TCCGGA	1 cut(s)	2782
KpnI	GGTACC	1 cut(s)	1436
KroI	GCCGGC	1 cut(s)	1243
KroNI	GCCGGC	1 cut(s)	1245
Kzo9I	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2430
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	8 cut(s)	76, 108, 289, 900, 1561, 1638, 1901, 2452
Lsp1109I	GCAGC	8 cut(s)	179, 712, 1970, 2023, 2494, 2497, 2539, 2914
LweI	GCATC	6 cut(s)	582, 1136, 1596, 2023, 2197, 2226
MaeI	CTAG	4 cut(s)	204, 368, 957, 1973
MaeII	ACGT	3 cut(s)	565, 953, 2388
MaeIII	GTNAC	3 cut(s)	310, 316, 706
MalI	GATC	7 cut(s)	95, 99, 465, 1595, 1629, 1971, 2432
MboI	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2430
MflI	RGATCY	2 cut(s)	1593, 1969
MhlI	GDGCHC	6 cut(s)	178, 294, 1321, 1566, 1583, 2449
MlsI	TGGCCA	1 cut(s)	2757
MluNI	TGGCCA	1 cut(s)	2757
MlyI	GAGTC	8 cut(s)	53, 59, 366, 727, 1148, 1276, 1555, 2788
Mox20I	TGGCCA	1 cut(s)	2757
Mph1103I	ATGCAT	1 cut(s)	2224
MroI	TCCGGA	1 cut(s)	2782
MroNI	GCCGGC	1 cut(s)	1243
MscI	TGGCCA	1 cut(s)	2757
MslI	CAYNNNNRTG	5 cut(s)	514, 1766, 2402, 2567, 2751
Msp20I	TGGCCA	1 cut(s)	2757
MspA1I	CMGCKG	2 cut(s)	170, 1229
Mva1269I	GAATGC	1 cut(s)	2224
MvaI	CCWGG	3 cut(s)	2184, 2629, 2721
MvnI	CGCG	3 cut(s)	423, 1481, 2928
NaeI	GCCGGC	1 cut(s)	1245
NciI	CCSGG	7 cut(s)	1218, 2601, 2808, 2809, 2843, 2844, 2888
NcoI	CCATGG	3 cut(s)	1428, 1598, 1754
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2430
NgoMIV	GCCGGC	1 cut(s)	1243
NlaIV	GGNNCC	8 cut(s)	121, 490, 1434, 1467, 1563, 1640, 1752, 2891
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	1 cut(s)	2224
NspI	RCATGY	2 cut(s)	2750, 2818
NspV	TTCGAA	1 cut(s)	965
OliI	CACNNNNGTG	1 cut(s)	2402
PceI	AGGCCT	2 cut(s)	392, 1100
PciI	ACATGT	2 cut(s)	2746, 2814
PciSI	GCTCTTC	1 cut(s)	804
PctI	GAATGC	1 cut(s)	2224
PdiI	GCCGGC	1 cut(s)	1245
PflMI	CCANNNNNTGG	1 cut(s)	163
PleI	GAGTC	8 cut(s)	52, 59, 365, 726, 1147, 1275, 1554, 2787
PpsI	GAGTC	8 cut(s)	52, 59, 365, 726, 1147, 1275, 1554, 2787
PscI	ACATGT	2 cut(s)	2746, 2814
PshBI	ATTAAT	1 cut(s)	1944
PsiI	TTATAA	1 cut(s)	2466
Psp124BI	GAGCTC	2 cut(s)	294, 2449
Psp1406I	AACGTT	1 cut(s)	565
Psp6I	CCWGG	3 cut(s)	2182, 2627, 2719
PspFI	CCCAGC	1 cut(s)	1229
PspGI	CCWGG	3 cut(s)	2182, 2627, 2719
PspN4I	GGNNCC	8 cut(s)	121, 490, 1434, 1467, 1563, 1640, 1752, 2891
PspPI	GGNCC	4 cut(s)	488, 2603, 2723, 2890
PsrI	GAACNNNNNNTAC	2 cut(s)	1425, 1457
PstNI	CAGNNNCTG	1 cut(s)	2348
PsuI	RGATCY	2 cut(s)	1593, 1969
PvuII	CAGCTG	2 cut(s)	170, 1229
RsaI	GTAC	8 cut(s)	822, 1434, 1989, 2304, 2535, 2573, 2813, 2819
RsaNI	GTAC	8 cut(s)	821, 1433, 1988, 2303, 2534, 2572, 2812, 2818
RseI	CAYNNNNRTG	5 cut(s)	514, 1766, 2402, 2567, 2751
SacI	GAGCTC	2 cut(s)	294, 2449
SapI	GCTCTTC	1 cut(s)	804
Sau3AI	GATC	7 cut(s)	93, 97, 463, 1593, 1627, 1969, 2430
Sau96I	GGNCC	4 cut(s)	488, 2603, 2723, 2890
SchI	GAGTC	8 cut(s)	53, 59, 366, 727, 1148, 1276, 1555, 2788
SduI	GDGCHC	6 cut(s)	178, 294, 1321, 1566, 1583, 2449
SfaNI	GCATC	6 cut(s)	582, 1136, 1596, 2023, 2197, 2226
SfuI	TTCGAA	1 cut(s)	965
SgrAI	CRCCGGYG	1 cut(s)	137
SinI	GGWCC	3 cut(s)	488, 2723, 2890
SmaI	CCCGGG	2 cut(s)	2809, 2844
SmiMI	CAYNNNNRTG	5 cut(s)	514, 1766, 2402, 2567, 2751
SmlI	CTYRAG	1 cut(s)	1896
SmoI	CTYRAG	1 cut(s)	1896
SpeI	ACTAGT	1 cut(s)	367
SseBI	AGGCCT	2 cut(s)	392, 1100
SspI	AATATT	2 cut(s)	1459, 1658
SspMI	CTAG	4 cut(s)	204, 368, 957, 1973
SstI	GAGCTC	2 cut(s)	294, 2449
StuI	AGGCCT	2 cut(s)	392, 1100
StyI	CCWWGG	6 cut(s)	48, 1057, 1428, 1598, 1642, 1754
TaaI	ACNGT	7 cut(s)	316, 344, 351, 1264, 1723, 1737, 2062
TaiI	ACGT	3 cut(s)	568, 956, 2391
TaqII	GACCGA	1 cut(s)	1440
TatI	WGTACW	2 cut(s)	2533, 2571
TauI	GCSGC	5 cut(s)	1816, 2242, 2275, 2527, 2931
TscAI	CASTG	3 cut(s)	131, 301, 1840
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	8 cut(s)	167, 725, 1958, 2036, 2482, 2485, 2527, 2902
Tsp45I	GTSAC	1 cut(s)	316
TspGWI	ACGGA	3 cut(s)	2150, 2715, 2835
TspMI	CCCGGG	2 cut(s)	2807, 2842
TspRI	CASTG	3 cut(s)	131, 301, 1840
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	3 cut(s)	488, 2723, 2890
VspI	ATTAAT	1 cut(s)	1944
XagI	CCTNNNNNAGG	2 cut(s)	1071, 1896
XapI	RAATTY	2 cut(s)	655, 1506
XbaI	TCTAGA	1 cut(s)	1972
XceI	RCATGY	2 cut(s)	2750, 2818
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2616, 2727
XmaI	CCCGGG	2 cut(s)	2807, 2842
XspI	CTAG	4 cut(s)	204, 368, 957, 1973
Zsp2I	ATGCAT	1 cut(s)	2224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.