Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011442

Physical Location & Seq

Genomic Coordinates Forward (+)

5728792 .. 5733013

Gene Structure 4222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1048900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATGTTTTATATAATTCTGCACCAGAATTAGTTGGGTTGTTGTCAGAGCTATATGATGCACATGAAGAGCTTGAAGGAAAAGTGAATCCACTTCTGGGCAAGGTTAAAAAAGGGGAGGCCATGTTGGAAGGAGGGATGCGCTATTTAGAAGTTAATCAGCTTCTTCTGCTTTCTTACTGCCAAGCAATAACATTCTACCTTCTTCTCAAGTCTGAAGGACAACCAGTTTGTGACCATCTGGTACTTGCTCGCCTCATAGAGATCAAGATTTTGTTGGATAAGATGAAGCAACTTGATGGCAATCTACCATCTGATTTTGAGGAAATTTTAAACAAATATAATTGGGTGGCAGCAGTGGCAAACTCAGCTGTGTTGCATGACATTGCTAAGGTAGAAATAGCGGAGTCTCTGAAGAATAATGAAAACCAGGTGGGAAAACGCAAATTTCAGAATGATGAGGTTGGTGTAGAGAGCATGAAAATTTTGAAAGTAAGAGCTGCCCTTGAGGAAAAGTTGAAGGAGAAAGGTGTCTTCAGTTCCATTGCTCCGAAAATTGATAAACCCAGGAAACTTCTGAAGCCATTGAATGGGAAGCTTGACTCATATGATGATTTTGATGATGACACTGTAAATATTGAGGGTGGCGTCCATGGATTGAACAACGGCCGTGCAAGTAAACTCTCCCAACTTGCTGCTAATCCGATTAAGTCGAAGATGGAGAAGAACAGGGGGGGGACTTACTCGTGCACACAAGAAGCTGATCAAGAATCCAAGAAAGAAGTATATGTTGAAGCACCAGAAGGCAGTGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10 Sas10_Utp3

Protein Analysis

273

Amino Acids

30.26

Weight (kDa)

5.21

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sas10_Utp3	PF04000	15 - 95	1.9e-15	Sas10/Utp3/C1D family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43650
fragaria_vesca	FvH4_5g27692 FvH4_5g27692 FvH4_5g27692
malus_domestica	MD04G1048900.v1.1 MD17G1177700.v1.1
prunus_persica	Prupe.1G206800_v2.0.a1
pyrus_communis	pycom04g04300
rosa_chinensis	RchiOBHm_Chr7g0219421
rosa_laevigata	RLG00000002290
rosa_multiflora	Rmu_sc0002460.1_g000021 Rmu_sc0003767.1_g000014
rosa_roxburghii	Rroxscaffold_3G00240050
rosa_rugosa	Rorug07G0184900
rosa_samantha	Rh7AG327800 Rh7BG317800 Rh7CG345200 Rh7DG323200
rosa_wichuraiana	Rw7G027650 Rw7G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AciI	CCGC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	3 cut(s)	327, 446, 483
AcuI	CTGAAG	4 cut(s)	237, 434, 520, 599
AcyI	GRCGYC	1 cut(s)	648
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	98, 590
AgsI	TTSAA	6 cut(s)	77, 490, 520, 589, 661, 794
AjnI	CCWGG	2 cut(s)	429, 566
AluBI	AGCT	7 cut(s)	52, 73, 163, 371, 500, 598, 761
AluI	AGCT	7 cut(s)	52, 73, 163, 371, 500, 598, 761
Alw21I	GWGCWC	1 cut(s)	752
Alw26I	GTCTC	1 cut(s)	414
Alw44I	GTGCAC	1 cut(s)	748
AoxI	GGCC	2 cut(s)	120, 667
ApaLI	GTGCAC	1 cut(s)	748
ApeKI	GCWGC	3 cut(s)	353, 500, 695
ApoI	RAATTY	3 cut(s)	327, 446, 483
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
AspLEI	GCGC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	752
BauI	CACGAG	1 cut(s)	745
BbsI	GAAGAC	1 cut(s)	526
Bbv12I	GWGCWC	1 cut(s)	752
BbvI	GCAGC	3 cut(s)	365, 487, 682
BccI	CCATC	4 cut(s)	246, 293, 319, 712
BceAI	ACGGC	2 cut(s)	654, 682
BciT130I	CCWGG	2 cut(s)	431, 568
BclI	TGATCA	1 cut(s)	763
BcoDI	GTCTC	1 cut(s)	414
BisI	GCNGC	3 cut(s)	354, 501, 696
BlsI	GCNGC	3 cut(s)	355, 502, 697
Bme1390I	CCNGG	2 cut(s)	431, 568
BmrFI	CCNGG	2 cut(s)	431, 568
BmsI	GCATC	2 cut(s)	49, 129
BpiI	GAAGAC	1 cut(s)	526
Bpu10I	CCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	194, 527
BsaBI	GATNNNNATC	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	566, 652
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 590
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	2 cut(s)	384, 543
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	431, 568
BseDI	CCNNGG	2 cut(s)	566, 652
BseGI	GGATG	2 cut(s)	10, 144
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	98, 590
BseMI	GCAATG	2 cut(s)	384, 543
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	752
BseX3I	CGGCCG	1 cut(s)	667
BseXI	GCAGC	3 cut(s)	365, 487, 682
BsgI	GTGCAG	1 cut(s)	6
Bsh1285I	CGRYCG	1 cut(s)	670
BshFI	GGCC	2 cut(s)	122, 669
BsiEI	CGRYCG	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	752
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	2 cut(s)	98, 590
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	1 cut(s)	751
BsnI	GGCC	2 cut(s)	122, 669
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp143I	GATC	2 cut(s)	264, 763
Bsp19I	CCATGG	1 cut(s)	652
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	2 cut(s)	122, 669
BspCNI	CTCAG	1 cut(s)	380
BspQI	GCTCTTC	1 cut(s)	63
BsrDI	GCAATG	2 cut(s)	384, 543
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	566, 652
BssMI	GATC	2 cut(s)	264, 763
BssNI	GRCGYC	1 cut(s)	648
BssSI	CACGAG	1 cut(s)	745
BssT1I	CCWWGG	1 cut(s)	652
Bst2BI	CACGAG	1 cut(s)	745
Bst2UI	CCWGG	2 cut(s)	431, 568
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	648
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	2 cut(s)	367, 390
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	2 cut(s)	10, 144
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	267, 766
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	2 cut(s)	264, 763
BstMCI	CGRYCG	1 cut(s)	670
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 359, 368
BstNI	CCWGG	2 cut(s)	431, 568
BstSCI	CCNGG	2 cut(s)	429, 566
BstSLI	GKGCMC	1 cut(s)	752
BstV1I	GCAGC	3 cut(s)	365, 487, 682
BstV2I	GAAGAC	1 cut(s)	526
BstZI	CGGCCG	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	122, 669
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	2 cut(s)	10, 144
BtsI	GCAGTG	2 cut(s)	363, 814
BtsIMutI	CAGTG	3 cut(s)	363, 627, 814
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	1 cut(s)	144
CseI	GACGC	1 cut(s)	637
CsiI	ACCWGGT	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	5 cut(s)	65, 124, 380, 478, 653
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	2 cut(s)	367, 390
DpnI	GATC	2 cut(s)	266, 765
DpnII	GATC	2 cut(s)	264, 763
DraI	TTTAAA	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	667
EagI	CGGCCG	1 cut(s)	667
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	652
Eco52I	CGGCCG	1 cut(s)	667
Eco57I	CTGAAG	4 cut(s)	237, 434, 520, 599
EcoRII	CCWGG	2 cut(s)	429, 566
EcoT14I	CCWWGG	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	5 cut(s)	68, 127, 383, 481, 656
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	5 cut(s)	64, 123, 379, 477, 652
FauNDI	CATATG	1 cut(s)	607
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	3 cut(s)	354, 501, 696
FokI	GGATG	2 cut(s)	17, 151
Fsp4HI	GCNGC	3 cut(s)	354, 501, 696
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	3 cut(s)	354, 501, 696
HaeIII	GGCC	2 cut(s)	122, 669
HgaI	GACGC	1 cut(s)	637
HhaI	GCGC	1 cut(s)	144
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	5 cut(s)	68, 127, 383, 481, 656
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	4 cut(s)	88, 407, 602, 770
Hpy166II	GTNNAC	2 cut(s)	680, 750
Hpy188I	TCNGA	8 cut(s)	49, 217, 316, 414, 453, 552, 579, 705
Hpy188III	TCNNGA	2 cut(s)	268, 767
Hpy8I	GTNNAC	2 cut(s)	680, 750
HpyAV	CCTTC	6 cut(s)	71, 125, 212, 212, 514, 797
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4V	TGCA	5 cut(s)	23, 62, 379, 674, 750
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 359, 368
HpyF3I	CTNAG	2 cut(s)	367, 390
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	5 cut(s)	68, 127, 383, 481, 656
HspAI	GCGC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	2 cut(s)	264, 763
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	3 cut(s)	365, 487, 682
LweI	GCATC	2 cut(s)	49, 129
MabI	ACCWGGT	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	2 cut(s)	266, 765
MboI	GATC	2 cut(s)	264, 763
MboII	GAAGA	7 cut(s)	80, 158, 197, 427, 526, 727, 736
MhlI	GDGCHC	1 cut(s)	752
MluCI	AATT	7 cut(s)	16, 29, 327, 343, 446, 483, 555
MlyI	GAGTC	2 cut(s)	416, 596
MmeI	TCCRAC	2 cut(s)	108, 258
MnlI	CCTC	7 cut(s)	112, 128, 266, 316, 454, 502, 634
MseI	TTAA	4 cut(s)	108, 156, 332, 708
MspA1I	CMGCKG	1 cut(s)	371
MspR9I	CCNGG	2 cut(s)	431, 568
MvaI	CCWGG	2 cut(s)	431, 568
MwoI	GCNNNNNNNGC	3 cut(s)	169, 359, 368
NcoI	CCATGG	1 cut(s)	652
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	2 cut(s)	264, 763
NlaIII	CATG	5 cut(s)	68, 127, 383, 481, 656
NmuCI	GTSAC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	88, 770
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	3 cut(s)	355, 502, 697
PleI	GAGTC	2 cut(s)	415, 596
PpsI	GAGTC	2 cut(s)	415, 596
Psp6I	CCWGG	2 cut(s)	429, 566
PspGI	CCWGG	2 cut(s)	429, 566
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	108, 156, 332, 708
SatI	GCNGC	3 cut(s)	354, 501, 696
Sau3AI	GATC	2 cut(s)	264, 763
SchI	GAGTC	2 cut(s)	416, 596
ScrFI	CCNGG	2 cut(s)	431, 568
SduI	GDGCHC	1 cut(s)	752
SexAI	ACCWGGT	1 cut(s)	429
SfaNI	GCATC	2 cut(s)	49, 129
SmlI	CTYRAG	2 cut(s)	209, 506
SmoI	CTYRAG	2 cut(s)	209, 506
Sse9I	AATT	7 cut(s)	16, 29, 327, 343, 446, 483, 555
SsiI	CCGC	1 cut(s)	404
SspI	AATATT	1 cut(s)	637
StyD4I	CCNGG	2 cut(s)	429, 566
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	1 cut(s)	631
TaqI	TCGA	1 cut(s)	713
TasI	AATT	7 cut(s)	16, 29, 327, 343, 446, 483, 555
TfiI	GAWTC	2 cut(s)	88, 770
Tru1I	TTAA	4 cut(s)	108, 156, 332, 708
Tru9I	TTAA	4 cut(s)	108, 156, 332, 708
TscAI	CASTG	3 cut(s)	363, 634, 814
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	353, 500, 695
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	4 cut(s)	81, 302, 438, 494
TspRI	CASTG	3 cut(s)	363, 634, 814
Van91I	CCANNNNNTGG	1 cut(s)	590
VneI	GTGCAC	1 cut(s)	748
XapI	RAATTY	3 cut(s)	327, 446, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.