Rh7BG317800

Something about silencing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
30807691 .. 30814400
6710 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG317800.1

Sequence Viewer

Length: 2010 bp
ATGGGTAAGAGAGGAAAGAGTACTAGTCAGAGAAAAGGCCATGAAAACCCTACTAAGACAAAGCTCCATGCCGTTGAAGACGACATGGATGATGAAGTCGATGCCTTTATGAAACAAAGAGATATTGTTCCCCTCGACCTTAATCAAGACGTTACAGATTCCGATGAAGATAACGAGCAAACAGTTTTCGATCTTCAGAATGTTAATGACGACGAGGAAGAGGAAGAGGAAGACGACGATGACATCCCCGATACTGGAATGGCTGCAAAAATTGTTAGGCAGCAGAAGTTTATGAGGGCGAAGTTTGGCGGAGTTGAGGATGAAATGCTTGATGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAAAGCCGATATGGGGTGGAAGGAGACCTGGTTATCATGGTGGCGATAATCGTGATTTTGAGGAAAAATCAAGCGACGATGACTCTGCTGAAGAGGAAGCGAGAGAAGCGGAGAGGATTCGGAGAGAAAAGGCAAAGTCATCAACACGAGAAGACTTTGGGCTTGAGGATGATAGTGAAGATGAGAGTAATAGGGAATCGACTTTTGAGGAAATGTCAGTTCATGGAAAAAGTGAAAAAAAGTCTCGAGTGATACTAGAAGTAGCAGATGACATGGGTACAGCTTATGAGGAGGTCAAGAAAGATTTGAATGCTTTGTCAAAGGAGGAACAATTATCTGTTTTAAACAATACTGCACCAGAGCTGGTTGGTTTGCTGGCAGAGCTGAATGATGCACTTGAAGAGCTTGAAAACAGAGTTGATCCAATTTTAATCAAGGTTAGAAGGGGTGAGGTCATGATGGAAGGAGGAATGCGCTATTTAGAGGTGAAGCAGCTTCTTCTGCTGGCGTATTCCCAAGCAATAACGTTCTACCTTCTTCTCAAGTCTGAAGGCCAACAAGTTCGTGATCATCCTGTACTTGCTCGCCTTGTAGACATCAAGAGTTTATTGGATAAGATGAAGCAACTGGATGAGAATCTTCCATCTGATCTCGAGGAAATCATAAACAAATATAATGGGATGGAAGCGGTGGTGAAATCGGTTAAAGAGAATGCTGCAAAACCATCGGATACTTTTGCTAAAGGATACAGATCCCAACTTGTCTCACTTGAACCAAAAGAAGCAGCTGTGTGGCATAACACAGTCCAGATGGAAAAGGTGAAGTCTCTGAAGGATGATGAAAAAGTGGGAAAACGTAAACGTCAGAGTGATGAAGTTGGTTCACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAATTGAAGCAGAAGGGTGTTTTCAATTCCATCACTCCAAGAACTGATAGACCCCAGAAACATCTGAAGCCATTAAATGGGAAGCTTGAATCGTATGATGATTTTGATGATGACCCTGTAAATGCTGAAGGCGCTAACCAGGGTCATGCAAGTTCATTGAGTGCTAGTAAAGTTTCCCAACTTGTTGCTGCTAATCGACATAAGTCAAAGATTGTTTCAGGCGATGATGACTTACCTCAGAGAGATGATATTGGGGAAAGACGGAGAAAACATGAGCTCCGAGTACTGGCAGGAGCTGGAATCAGGTCCGAGGATGATGCTGGAGAAAATGACACTATTTCAGATGATGGAGACATTGAGATGGAGGATAGTGAAGCTGGAGATTCAGAAGATGACTTTTACGAACAAGCAAAACAAAACCGAGCTGCAAAACTCGCTGCCAAAGCTGACATCCATTCTAGGTCCTCCTCAGTTCCATCTTTACCTGAAACTGTGGATGGCAAACGTCATATTACTTATCAGATGGAGAAGAACAGAGGACTTACTCGCGCTCGAAAGAAGCTGATCAAGAATCCAAGAAAGAAATACAAGTTGAAACATGAGAAGAAAATGAAGAATCGGAAAGGACAGGTACGGGAAGTCAAGAAGCCTATTGGTCCATACGGTGGGGAGACATCTGGAATCAATCCGAGAATCAGTCGGAGCACCAGATTTAAGAACTAA

Protein Analysis

669

Amino Acids

75.83

Weight (kDa)

5.05

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 246 - 326 2.6e-18 Sas10/Utp3/C1D family
Sas10 PF09368 595 - 667 2.7e-26 Sas10 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1364, 1952
AccI GTMKAC 1 cut(s) 954
AccII CGCG 1 cut(s) 1836
AciI CCGC 3 cut(s) 309, 470, 1049
AclI AACGTT 1 cut(s) 887
AclWI GGATC 2 cut(s) 776, 1107
AcuI CTGAAG 6 cut(s) 179, 471, 930, 1211, 1373, 1434
AfaI GTAC 5 cut(s) 22, 640, 939, 1572, 1920
AfiI CCNNNNNNNGG 5 cut(s) 254, 374, 1364, 1573, 1952
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 2 cut(s) 388, 1425
Alw21I GWGCWC 2 cut(s) 1566, 1994
Alw26I GTCTC 6 cut(s) 379, 609, 1129, 1191, 1632, 1952
AlwI GGATC 2 cut(s) 776, 1107
AlwNI CAGNNNCTG 1 cut(s) 1583
Ama87I CYCGRG 2 cut(s) 606, 1013
AoxI GGCC 2 cut(s) 37, 913
ApeKI GCWGC 9 cut(s) 263, 280, 853, 1076, 1145, 1274, 1475, 1712, 1724
AspLEI GCGC 3 cut(s) 837, 1421, 1838
AspS9I GGNCC 3 cut(s) 1593, 1749, 1943
AsuHPI GGTGA 4 cut(s) 821, 859, 1066, 1192
AvaI CYCGRG 2 cut(s) 606, 1013
AvaII GGWCC 3 cut(s) 1593, 1749, 1943
BanII GRGCYC 1 cut(s) 1566
BauI CACGAG 1 cut(s) 507
BbsI GAAGAC 3 cut(s) 84, 237, 519
Bbv12I GWGCWC 2 cut(s) 1566, 1994
BbvI GCAGC 9 cut(s) 250, 292, 865, 1063, 1157, 1261, 1462, 1699, 1711
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 6 cut(s) 428, 462, 1068, 1102, 1586, 1620
BciT130I CCWGG 2 cut(s) 390, 1427
BciVI GTATCC 2 cut(s) 1084, 1100
BclI TGATCA 2 cut(s) 928, 1851
BcoDI GTCTC 6 cut(s) 379, 609, 1129, 1191, 1632, 1952
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 4 cut(s) 24, 617, 1452, 1746
BfoI RGCGCY 1 cut(s) 1422
BfuI GTATCC 2 cut(s) 1084, 1100
BisI GCNGC 9 cut(s) 264, 281, 854, 1077, 1146, 1275, 1476, 1713, 1725
BlsI GCNGC 9 cut(s) 265, 282, 855, 1078, 1147, 1276, 1477, 1714, 1726
BmcAI AGTACT 2 cut(s) 22, 1572
Bme1390I CCNGG 2 cut(s) 390, 1427
Bme18I GGWCC 3 cut(s) 1593, 1749, 1943
BmeT110I CYCGRG 2 cut(s) 606, 1013
BmgT120I GGNCC 3 cut(s) 1593, 1749, 1943
BmrFI CCNGG 2 cut(s) 390, 1427
BmsI GCATC 3 cut(s) 91, 742, 1594
BoxI GACNNNNGTC 1 cut(s) 1489
BpiI GAAGAC 3 cut(s) 84, 237, 519
BpmI CTGGAG 2 cut(s) 1629, 1686
BpuEI CTTGAG 3 cut(s) 545, 887, 1301
BsaBI GATNNNNATC 2 cut(s) 996, 1111
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 2 cut(s) 1426, 1596
BsaXI ACNNNNNCTCC 4 cut(s) 376, 406, 1548, 1578
Bsc4I CCNNNNNNNGG 5 cut(s) 254, 374, 1364, 1573, 1952
Bse1I ACTGG 3 cut(s) 259, 993, 1578
Bse8I GATNNNNATC 2 cut(s) 996, 1111
BseBI CCWGG 2 cut(s) 390, 1427
BseDI CCNNGG 2 cut(s) 1426, 1596
BseJI GATNNNNATC 2 cut(s) 996, 1111
BseLI CCNNNNNNNGG 5 cut(s) 254, 374, 1364, 1573, 1952
BseMII CTCAG 2 cut(s) 1538, 1770
BseNI ACTGG 3 cut(s) 259, 993, 1578
BseRI GAGGAG 2 cut(s) 665, 1744
BseXI GCAGC 9 cut(s) 250, 292, 865, 1063, 1157, 1261, 1462, 1699, 1711
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 1836
BshFI GGCC 2 cut(s) 39, 915
BsiHKAI GWGCWC 2 cut(s) 1566, 1994
BsiHKCI CYCGRG 2 cut(s) 606, 1013
BslI CCNNNNNNNGG 5 cut(s) 254, 374, 1364, 1573, 1952
BsmAI GTCTC 6 cut(s) 379, 609, 1129, 1191, 1632, 1952
BsmI GAATGC 3 cut(s) 676, 837, 1078
BsnI GGCC 2 cut(s) 39, 915
Bso31I GGTCTC 1 cut(s) 379
BsoBI CYCGRG 2 cut(s) 606, 1013
Bsp1286I GDGCHC 2 cut(s) 1566, 1994
Bsp143I GATC 6 cut(s) 190, 781, 928, 1009, 1112, 1851
BspACI CCGC 3 cut(s) 309, 470, 1049
BspANI GGCC 2 cut(s) 39, 915
BspCNI CTCAG 2 cut(s) 1537, 1769
BspFNI CGCG 1 cut(s) 1836
BspHI TCATGA 1 cut(s) 816
BspPI GGATC 2 cut(s) 776, 1107
BspQI GCTCTTC 1 cut(s) 756
BspTNI GGTCTC 1 cut(s) 379
BsrI ACTGG 3 cut(s) 259, 993, 1578
BssECI CCNNGG 2 cut(s) 1426, 1596
BssMI GATC 6 cut(s) 190, 781, 928, 1009, 1112, 1851
BssSI CACGAG 1 cut(s) 507
Bst2BI CACGAG 1 cut(s) 507
Bst2UI CCWGG 2 cut(s) 390, 1427
Bst4CI ACNGT 4 cut(s) 184, 1165, 1780, 1952
Bst6I CTCTTC 5 cut(s) 213, 219, 348, 447, 756
BstC8I GCNNGC 3 cut(s) 738, 867, 946
BstDEI CTNAG 3 cut(s) 54, 1524, 1756
BstFNI CGCG 1 cut(s) 1836
BstH2I RGCGCY 1 cut(s) 1422
BstHHI GCGC 3 cut(s) 837, 1421, 1838
BstKTI GATC 6 cut(s) 193, 784, 931, 1012, 1115, 1854
BstMAI GTCTC 6 cut(s) 379, 609, 1129, 1191, 1632, 1952
BstMBI GATC 6 cut(s) 190, 781, 928, 1009, 1112, 1851
BstMWI GCNNNNNNNGC 6 cut(s) 467, 742, 862, 1418, 1721, 1730
BstNI CCWGG 2 cut(s) 390, 1427
BstPAI GACNNNNGTC 1 cut(s) 1489
BstSCI CCNGG 2 cut(s) 388, 1425
BstUI CGCG 1 cut(s) 1836
BstV1I GCAGC 9 cut(s) 250, 292, 865, 1063, 1157, 1261, 1462, 1699, 1711
BstV2I GAAGAC 3 cut(s) 84, 237, 519
BstX2I RGATCY 1 cut(s) 1112
BstYI RGATCY 1 cut(s) 1112
BsuI GTATCC 2 cut(s) 1084, 1100
BsuRI GGCC 2 cut(s) 39, 915
BtgZI GCGATG 1 cut(s) 1524
Cac8I GCNNGC 3 cut(s) 738, 867, 946
CaiI CAGNNNCTG 1 cut(s) 1583
CciI TCATGA 1 cut(s) 816
CfoI GCGC 3 cut(s) 837, 1421, 1838
Cfr13I GGNCC 3 cut(s) 1593, 1749, 1943
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 5 cut(s) 21, 639, 938, 1571, 1919
CviQI GTAC 5 cut(s) 21, 639, 938, 1571, 1919
DdeI CTNAG 3 cut(s) 54, 1524, 1756
DpnI GATC 6 cut(s) 192, 783, 930, 1011, 1114, 1853
DpnII GATC 6 cut(s) 190, 781, 928, 1009, 1112, 1851
DraI TTTAAA 1 cut(s) 705
Eam1104I CTCTTC 5 cut(s) 213, 219, 348, 447, 756
EarI CTCTTC 5 cut(s) 213, 219, 348, 447, 756
EciI GGCGGA 1 cut(s) 324
Ecl136II GAGCTC 1 cut(s) 1564
Eco24I GRGCYC 1 cut(s) 1566
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 3 cut(s) 1593, 1749, 1943
Eco53kI GAGCTC 1 cut(s) 1564
Eco57I CTGAAG 6 cut(s) 179, 471, 930, 1211, 1373, 1434
Eco88I CYCGRG 2 cut(s) 606, 1013
EcoICRI GAGCTC 1 cut(s) 1564
EcoO109I RGGNCCY 1 cut(s) 1749
EcoRII CCWGG 2 cut(s) 388, 1425
EcoT38I GRGCYC 1 cut(s) 1566
FbaI TGATCA 2 cut(s) 928, 1851
FblI GTMKAC 1 cut(s) 954
Fnu4HI GCNGC 9 cut(s) 264, 281, 854, 1077, 1146, 1275, 1476, 1713, 1725
FriOI GRGCYC 1 cut(s) 1566
Fsp4HI GCNGC 9 cut(s) 264, 281, 854, 1077, 1146, 1275, 1476, 1713, 1725
FspBI CTAG 4 cut(s) 24, 617, 1452, 1746
GlaI GCGC 3 cut(s) 836, 1420, 1837
GluI GCNGC 9 cut(s) 264, 281, 854, 1077, 1146, 1275, 1476, 1713, 1725
GsuI CTGGAG 2 cut(s) 1629, 1686
HaeII RGCGCY 1 cut(s) 1422
HaeIII GGCC 2 cut(s) 39, 915
HhaI GCGC 3 cut(s) 837, 1421, 1838
Hin6I GCGC 3 cut(s) 835, 1419, 1836
HinP1I GCGC 3 cut(s) 835, 1419, 1836
HindIII AAGCTT 1 cut(s) 1370
HphI GGTGA 4 cut(s) 821, 859, 1066, 1192
Hpy166II GTNNAC 3 cut(s) 955, 1220, 1244
Hpy8I GTNNAC 3 cut(s) 955, 1220, 1244
Hpy99I CGWCG 3 cut(s) 215, 239, 440
HpyAV CCTTC 8 cut(s) 375, 798, 818, 905, 905, 1186, 1294, 1409
HpyCH4III ACNGT 4 cut(s) 184, 1165, 1780, 1952
HpyCH4IV ACGT 5 cut(s) 150, 887, 1216, 1222, 1792
HpyCH4V TGCA 6 cut(s) 266, 716, 755, 1079, 1436, 1715
HpyF10VI GCNNNNNNNGC 6 cut(s) 467, 742, 862, 1418, 1721, 1730
HpyF3I CTNAG 3 cut(s) 54, 1524, 1756
HpySE526I ACGT 5 cut(s) 150, 887, 1216, 1222, 1792
HspAI GCGC 3 cut(s) 835, 1419, 1836
Ksp22I TGATCA 2 cut(s) 928, 1851
Kzo9I GATC 6 cut(s) 190, 781, 928, 1009, 1112, 1851
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 4 cut(s) 69, 1569, 1580, 1989
Lsp1109I GCAGC 9 cut(s) 250, 292, 865, 1063, 1157, 1261, 1462, 1699, 1711
LweI GCATC 3 cut(s) 91, 742, 1594
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 4 cut(s) 24, 617, 1452, 1746
MaeII ACGT 5 cut(s) 150, 887, 1216, 1222, 1792
MaeIII GTNAC 1 cut(s) 151
MalI GATC 6 cut(s) 192, 783, 930, 1011, 1114, 1853
MboI GATC 6 cut(s) 190, 781, 928, 1009, 1112, 1851
MflI RGATCY 1 cut(s) 1112
MhlI GDGCHC 2 cut(s) 1566, 1994
MluCI AATT 5 cut(s) 270, 692, 786, 1289, 1312
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 1967
MseI TTAA 7 cut(s) 141, 204, 704, 791, 1065, 1361, 2001
MslI CAYNNNNRTG 2 cut(s) 1256, 1646
MspA1I CMGCKG 1 cut(s) 1148
MspR9I CCNGG 2 cut(s) 390, 1427
Mva1269I GAATGC 3 cut(s) 676, 837, 1078
MvaI CCWGG 2 cut(s) 390, 1427
MvnI CGCG 1 cut(s) 1836
MwoI GCNNNNNNNGC 6 cut(s) 467, 742, 862, 1418, 1721, 1730
NdeII GATC 6 cut(s) 190, 781, 928, 1009, 1112, 1851
PaeR7I CTCGAG 2 cut(s) 606, 1013
PagI TCATGA 1 cut(s) 816
PciSI GCTCTTC 1 cut(s) 756
PctI GAATGC 3 cut(s) 676, 837, 1078
PflMI CCANNNNNTGG 2 cut(s) 1364, 1952
PkrI GCNGC 9 cut(s) 265, 282, 855, 1078, 1147, 1276, 1477, 1714, 1726
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PpuMI RGGWCCY 1 cut(s) 1749
PshAI GACNNNNGTC 1 cut(s) 1489
Psp124BI GAGCTC 1 cut(s) 1566
Psp1406I AACGTT 1 cut(s) 887
Psp5II RGGWCCY 1 cut(s) 1749
Psp6I CCWGG 2 cut(s) 388, 1425
PspGI CCWGG 2 cut(s) 388, 1425
PspPI GGNCC 3 cut(s) 1593, 1749, 1943
PspPPI RGGWCCY 1 cut(s) 1749
PstNI CAGNNNCTG 1 cut(s) 1583
PsuI RGATCY 1 cut(s) 1112
PvuII CAGCTG 1 cut(s) 1148
RsaI GTAC 5 cut(s) 22, 640, 939, 1572, 1920
RsaNI GTAC 5 cut(s) 21, 639, 938, 1571, 1919
RseI CAYNNNNRTG 2 cut(s) 1256, 1646
SacI GAGCTC 1 cut(s) 1566
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 7 cut(s) 141, 204, 704, 791, 1065, 1361, 2001
SatI GCNGC 9 cut(s) 264, 281, 854, 1077, 1146, 1275, 1476, 1713, 1725
Sau3AI GATC 6 cut(s) 190, 781, 928, 1009, 1112, 1851
Sau96I GGNCC 3 cut(s) 1593, 1749, 1943
ScaI AGTACT 2 cut(s) 22, 1572
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 2 cut(s) 390, 1427
SduI GDGCHC 2 cut(s) 1566, 1994
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 3 cut(s) 91, 742, 1594
Sfr274I CTCGAG 2 cut(s) 606, 1013
SinI GGWCC 3 cut(s) 1593, 1749, 1943
SlaI CTCGAG 2 cut(s) 606, 1013
SmiMI CAYNNNNRTG 2 cut(s) 1256, 1646
SmlI CTYRAG 5 cut(s) 524, 606, 902, 1013, 1280
SmoI CTYRAG 5 cut(s) 524, 606, 902, 1013, 1280
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 5 cut(s) 270, 692, 786, 1289, 1312
SsiI CCGC 3 cut(s) 309, 470, 1049
SspMI CTAG 4 cut(s) 24, 617, 1452, 1746
SstI GAGCTC 1 cut(s) 1566
StyD4I CCNGG 2 cut(s) 388, 1425
TaaI ACNGT 4 cut(s) 184, 1165, 1780, 1952
TaiI ACGT 5 cut(s) 153, 890, 1219, 1225, 1795
TaqI TCGA 8 cut(s) 99, 135, 189, 560, 607, 1014, 1483, 1840
TasI AATT 5 cut(s) 270, 692, 786, 1289, 1312
TatI WGTACW 3 cut(s) 20, 937, 1570
Tru1I TTAA 7 cut(s) 141, 204, 704, 791, 1065, 1361, 2001
Tru9I TTAA 7 cut(s) 141, 204, 704, 791, 1065, 1361, 2001
TseI GCWGC 9 cut(s) 263, 280, 853, 1076, 1145, 1274, 1475, 1712, 1724
TspGWI ACGGA 1 cut(s) 1564
Van91I CCANNNNNTGG 2 cut(s) 1364, 1952
VpaK11BI GGWCC 3 cut(s) 1593, 1749, 1943
XhoI CTCGAG 2 cut(s) 606, 1013
XmiI GTMKAC 1 cut(s) 954
XspI CTAG 4 cut(s) 24, 617, 1452, 1746
ZrmI AGTACT 2 cut(s) 22, 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.