Rw7G027690

Something about silencing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
36352645 .. 36359394
6750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027690.1

Sequence Viewer

Length: 2007 bp
ATGGGTAAGAGAGGAAAGAGTACTAGTCAGAGAAAAGGCAATGAAAACCCTACGAAGACAAAGTTCCATGCCGTTGAAGACGACATGGATGATGAAGTCGATGCCTTTATGAAACAAAGAGATATTGTTCCCCTCGACCTTAATCAAGACGTTACAGATTCCGATGAAGATCACGAGCAAACAGTTTTCGATCTTCAGAATGTTAATGACGACGAGGAAGAGGAAGAGGAAGACGACGATGACATCCCCGATACTGGAATGGCTGCAAAAATTGTTAGGCAGCAGAAGTTTATGAGGGCGAAGTTTGGCGGAGTTGAGGATGAAATGCTTGATGAAGAAGAAGAAGAAGAAGAGGAAGAAAAGCCGATATGGGGTGGAAGGAGACCTGGTTATCATGGTGGCGATAATCGTGATTTTGAGGAAAAATCAAGCGATGATGACTCTGCTGAAGAGGAAGCGAGAGAAGCGGAGAGGATTCGGAGAGAAAAGGCAAAGTCATCAACACGAGAAGACTTTGGGCTTGAGGATGATAGTGAAGATGAGGGTAATAGGGAATCGACTTTTGAGGAAATGTCAGTTCATGGAAAAAGTGAAAAAAAGTCTCGAGTGATACTAGAAGTAGCAGATGACATGGGTACAGCTTATGAGGAGGTCAAGAAAGATTTGAATGCTTTGTCAAAGGAGGAACAATTATCTGTTTTAAACAATACTGCACCAGAGCTGGTTGGTTTGCTGGCAGAGCTGAATGATGCACTTGAAGAGCTTGAAAACAGAGTTGATCCAATTTTAATCAAGGTTAGAAGGGGTGAGGTCATGATGGAAGGAGGAATGCGCTATTTAGAGGTGAAGCAGCTTCTTCTGCTGGCGTATTCCCAAGCAATAACGTTCTACCTTCTTCTCAAGTCTGAAGGCCAACAAGTTCGTGATCATCCTGTACTTGCTCGCCTTGTAGAGATCAAGAGTTTATTGGATAAGATGAAGCAACTGGATGAGAATCTTCCATCTAATCTCGAGGAAATCATAAACAAATATAATGGGATGGAAGCGGTGGTGAAATCGGTTAAAGAGAATGCTGCAAAACCATCGGATACTTTTGCTAAAGGATACAGATCCCAACTTGTCTCACTTGAACCAAAAGAAGCAGCTGTGTTGCATAACACAGTCCAGATGGAAAAGGTGAAGTCTCTGAAGGATGATGAAAAAGTGGGAAAACGTAAACGTCAGAGTGATGAAGTTGGTTCACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAATTGAAGCAGAAGGGTGTTTTCAATTCCATCACTCCAAGAACTGATAGACCCCAGAAACATCTGAAACCATTAAATGGGAAGCTTGAATCGTATGATGATTTTGATGATGACCCTGTAAATGCTGAAGGCGCTAACCAGGGTCATGCAAGTTCATTGAGTGCTAGTAAAGTTTCCCAACTTGTTGCTGCTAATCGACATAAGTCAAAGATTGTTTCAGGTGATGATGACTTACCTCAGAGAGATGATATTGGGGAAAGACGGAGAAAACATGAGCTCCGAGTACTGGCAGGAGCTGGAATCAGGTCCGAGGATGATGCTGGAGAAAATGACACTATTTCAGATGATGGAGACATTGAGATGGAGGATAGTGAAGCTGGAGATTCAGAAGATGACTTTTACGAACAAGCAAAACAAAACCGAGCTGCAAAACTCGCTGCCAAAGCTGACATCCATTCTAGGTCCTCCTCAGTTCCATCTTTGCCTGAAACTGTGGATGGCAAACGTCATATTACTTATCAGATGGAGAAGAACAGAGGACTTACTCGCGCTCGAAAGAAGCTGATCAAGAATCCAAGAAAGAAATACAAGTTGAAGCATGAGAAGAAAATGAAGAATCGGAAAGGACAGGTACGGGAAGTCAAGAAGCCTATTGGTCCATACGGTGGGGAGACGTCTGGAATCAATCCGAGAATCAGTCGGAGCACCAGATTTAAGAACTAA

Protein Analysis

668

Amino Acids

75.65

Weight (kDa)

5.09

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 245 - 325 4.2e-19 Sas10/Utp3/C1D family
Sas10 PF09368 594 - 666 2.7e-26 Sas10 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1961
AccB7I CCANNNNNTGG 2 cut(s) 1361, 1949
AccII CGCG 1 cut(s) 1833
AciI CCGC 3 cut(s) 309, 467, 1046
AclI AACGTT 1 cut(s) 884
AclWI GGATC 2 cut(s) 773, 1104
AcuI CTGAAG 5 cut(s) 179, 468, 927, 1208, 1431
AcyI GRCGYC 1 cut(s) 1958
AfaI GTAC 5 cut(s) 22, 637, 936, 1569, 1917
AfiI CCNNNNNNNGG 5 cut(s) 254, 371, 1361, 1570, 1949
AhlI ACTAGT 1 cut(s) 23
AjnI CCWGG 2 cut(s) 385, 1422
Alw21I GWGCWC 2 cut(s) 1563, 1991
Alw26I GTCTC 6 cut(s) 376, 606, 1126, 1188, 1629, 1949
AlwI GGATC 2 cut(s) 773, 1104
AlwNI CAGNNNCTG 1 cut(s) 1580
Ama87I CYCGRG 2 cut(s) 603, 1010
AoxI GGCC 1 cut(s) 910
ApeKI GCWGC 9 cut(s) 263, 280, 850, 1073, 1142, 1271, 1472, 1709, 1721
AspLEI GCGC 3 cut(s) 834, 1418, 1835
AspS9I GGNCC 3 cut(s) 1590, 1746, 1940
AsuHPI GGTGA 5 cut(s) 818, 856, 1063, 1189, 1517
AvaI CYCGRG 2 cut(s) 603, 1010
AvaII GGWCC 3 cut(s) 1590, 1746, 1940
BanII GRGCYC 1 cut(s) 1563
BauI CACGAG 2 cut(s) 173, 504
BbsI GAAGAC 4 cut(s) 62, 84, 237, 516
Bbv12I GWGCWC 2 cut(s) 1563, 1991
BbvI GCAGC 9 cut(s) 250, 292, 862, 1060, 1154, 1258, 1459, 1696, 1708
BceAI ACGGC 1 cut(s) 56
BcgI CGANNNNNNTGC 4 cut(s) 1065, 1099, 1583, 1617
BciT130I CCWGG 2 cut(s) 387, 1424
BciVI GTATCC 2 cut(s) 1081, 1097
BclI TGATCA 2 cut(s) 925, 1848
BcoDI GTCTC 6 cut(s) 376, 606, 1126, 1188, 1629, 1949
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 4 cut(s) 24, 614, 1449, 1743
BfoI RGCGCY 1 cut(s) 1419
BfuI GTATCC 2 cut(s) 1081, 1097
BisI GCNGC 9 cut(s) 264, 281, 851, 1074, 1143, 1272, 1473, 1710, 1722
BlsI GCNGC 9 cut(s) 265, 282, 852, 1075, 1144, 1273, 1474, 1711, 1723
BmcAI AGTACT 2 cut(s) 22, 1569
Bme1390I CCNGG 2 cut(s) 387, 1424
Bme18I GGWCC 3 cut(s) 1590, 1746, 1940
BmeT110I CYCGRG 2 cut(s) 603, 1010
BmgT120I GGNCC 3 cut(s) 1590, 1746, 1940
BmrFI CCNGG 2 cut(s) 387, 1424
BmsI GCATC 3 cut(s) 91, 739, 1591
BoxI GACNNNNGTC 1 cut(s) 1486
BpiI GAAGAC 4 cut(s) 62, 84, 237, 516
BpmI CTGGAG 2 cut(s) 1626, 1683
BpuEI CTTGAG 3 cut(s) 542, 884, 1298
BsaBI GATNNNNATC 3 cut(s) 168, 993, 1108
BsaHI GRCGYC 1 cut(s) 1958
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 1423, 1593
BsaXI ACNNNNNCTCC 4 cut(s) 373, 403, 1545, 1575
Bsc4I CCNNNNNNNGG 5 cut(s) 254, 371, 1361, 1570, 1949
Bse1I ACTGG 3 cut(s) 259, 990, 1575
Bse3DI GCAATG 1 cut(s) 46
Bse8I GATNNNNATC 3 cut(s) 168, 993, 1108
BseBI CCWGG 2 cut(s) 387, 1424
BseDI CCNNGG 2 cut(s) 1423, 1593
BseJI GATNNNNATC 3 cut(s) 168, 993, 1108
BseLI CCNNNNNNNGG 5 cut(s) 254, 371, 1361, 1570, 1949
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 1535, 1767
BseNI ACTGG 3 cut(s) 259, 990, 1575
BseRI GAGGAG 2 cut(s) 662, 1741
BseXI GCAGC 9 cut(s) 250, 292, 862, 1060, 1154, 1258, 1459, 1696, 1708
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 1833
BshFI GGCC 1 cut(s) 912
BsiHKAI GWGCWC 2 cut(s) 1563, 1991
BsiHKCI CYCGRG 2 cut(s) 603, 1010
BslI CCNNNNNNNGG 5 cut(s) 254, 371, 1361, 1570, 1949
BsmAI GTCTC 6 cut(s) 376, 606, 1126, 1188, 1629, 1949
BsmBI CGTCTC 1 cut(s) 1949
BsmI GAATGC 3 cut(s) 673, 834, 1075
BsnI GGCC 1 cut(s) 912
Bso31I GGTCTC 1 cut(s) 376
BsoBI CYCGRG 2 cut(s) 603, 1010
Bsp1286I GDGCHC 2 cut(s) 1563, 1991
Bsp143I GATC 7 cut(s) 169, 190, 778, 925, 954, 1109, 1848
BspACI CCGC 3 cut(s) 309, 467, 1046
BspANI GGCC 1 cut(s) 912
BspCNI CTCAG 2 cut(s) 1534, 1766
BspFNI CGCG 1 cut(s) 1833
BspHI TCATGA 1 cut(s) 813
BspPI GGATC 2 cut(s) 773, 1104
BspQI GCTCTTC 1 cut(s) 753
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 46
BsrI ACTGG 3 cut(s) 259, 990, 1575
BssECI CCNNGG 2 cut(s) 1423, 1593
BssMI GATC 7 cut(s) 169, 190, 778, 925, 954, 1109, 1848
BssNI GRCGYC 1 cut(s) 1958
BssSI CACGAG 2 cut(s) 173, 504
Bst2BI CACGAG 2 cut(s) 173, 504
Bst2UI CCWGG 2 cut(s) 387, 1424
Bst4CI ACNGT 4 cut(s) 184, 1162, 1777, 1949
Bst6I CTCTTC 5 cut(s) 213, 219, 345, 444, 753
BstACI GRCGYC 1 cut(s) 1958
BstC8I GCNNGC 3 cut(s) 735, 864, 943
BstDEI CTNAG 2 cut(s) 1521, 1753
BstFNI CGCG 1 cut(s) 1833
BstH2I RGCGCY 1 cut(s) 1419
BstHHI GCGC 3 cut(s) 834, 1418, 1835
BstKTI GATC 7 cut(s) 172, 193, 781, 928, 957, 1112, 1851
BstMAI GTCTC 6 cut(s) 376, 606, 1126, 1188, 1629, 1949
BstMBI GATC 7 cut(s) 169, 190, 778, 925, 954, 1109, 1848
BstMWI GCNNNNNNNGC 6 cut(s) 464, 739, 859, 1415, 1718, 1727
BstNI CCWGG 2 cut(s) 387, 1424
BstPAI GACNNNNGTC 1 cut(s) 1486
BstSCI CCNGG 2 cut(s) 385, 1422
BstUI CGCG 1 cut(s) 1833
BstV1I GCAGC 9 cut(s) 250, 292, 862, 1060, 1154, 1258, 1459, 1696, 1708
BstV2I GAAGAC 4 cut(s) 62, 84, 237, 516
BstX2I RGATCY 1 cut(s) 1109
BstYI RGATCY 1 cut(s) 1109
BsuI GTATCC 2 cut(s) 1081, 1097
BsuRI GGCC 1 cut(s) 912
BtgZI GCGATG 1 cut(s) 447
Cac8I GCNNGC 3 cut(s) 735, 864, 943
CaiI CAGNNNCTG 1 cut(s) 1580
CciI TCATGA 1 cut(s) 813
CfoI GCGC 3 cut(s) 834, 1418, 1835
Cfr13I GGNCC 3 cut(s) 1590, 1746, 1940
CsiI ACCWGGT 1 cut(s) 385
Csp6I GTAC 5 cut(s) 21, 636, 935, 1568, 1916
CviQI GTAC 5 cut(s) 21, 636, 935, 1568, 1916
DdeI CTNAG 2 cut(s) 1521, 1753
DpnI GATC 7 cut(s) 171, 192, 780, 927, 956, 1111, 1850
DpnII GATC 7 cut(s) 169, 190, 778, 925, 954, 1109, 1848
DraI TTTAAA 1 cut(s) 702
Eam1104I CTCTTC 5 cut(s) 213, 219, 345, 444, 753
EarI CTCTTC 5 cut(s) 213, 219, 345, 444, 753
EciI GGCGGA 1 cut(s) 324
Ecl136II GAGCTC 1 cut(s) 1561
Eco24I GRGCYC 1 cut(s) 1563
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 3 cut(s) 1590, 1746, 1940
Eco53kI GAGCTC 1 cut(s) 1561
Eco57I CTGAAG 5 cut(s) 179, 468, 927, 1208, 1431
Eco88I CYCGRG 2 cut(s) 603, 1010
EcoICRI GAGCTC 1 cut(s) 1561
EcoO109I RGGNCCY 1 cut(s) 1746
EcoRII CCWGG 2 cut(s) 385, 1422
EcoT38I GRGCYC 1 cut(s) 1563
Esp3I CGTCTC 1 cut(s) 1949
FbaI TGATCA 2 cut(s) 925, 1848
Fnu4HI GCNGC 9 cut(s) 264, 281, 851, 1074, 1143, 1272, 1473, 1710, 1722
FriOI GRGCYC 1 cut(s) 1563
Fsp4HI GCNGC 9 cut(s) 264, 281, 851, 1074, 1143, 1272, 1473, 1710, 1722
FspBI CTAG 4 cut(s) 24, 614, 1449, 1743
GlaI GCGC 3 cut(s) 833, 1417, 1834
GluI GCNGC 9 cut(s) 264, 281, 851, 1074, 1143, 1272, 1473, 1710, 1722
GsuI CTGGAG 2 cut(s) 1626, 1683
HaeII RGCGCY 1 cut(s) 1419
HaeIII GGCC 1 cut(s) 912
HhaI GCGC 3 cut(s) 834, 1418, 1835
Hin1I GRCGYC 1 cut(s) 1958
Hin6I GCGC 3 cut(s) 832, 1416, 1833
HinP1I GCGC 3 cut(s) 832, 1416, 1833
HindIII AAGCTT 1 cut(s) 1367
HphI GGTGA 5 cut(s) 818, 856, 1063, 1189, 1517
Hpy166II GTNNAC 2 cut(s) 1217, 1241
Hpy8I GTNNAC 2 cut(s) 1217, 1241
Hpy99I CGWCG 2 cut(s) 215, 239
HpyAV CCTTC 8 cut(s) 372, 795, 815, 902, 902, 1183, 1291, 1406
HpyCH4III ACNGT 4 cut(s) 184, 1162, 1777, 1949
HpyCH4IV ACGT 6 cut(s) 150, 884, 1213, 1219, 1789, 1958
HpyCH4V TGCA 7 cut(s) 266, 713, 752, 1076, 1153, 1433, 1712
HpyF10VI GCNNNNNNNGC 6 cut(s) 464, 739, 859, 1415, 1718, 1727
HpyF3I CTNAG 2 cut(s) 1521, 1753
HpySE526I ACGT 6 cut(s) 150, 884, 1213, 1219, 1789, 1958
Hsp92I GRCGYC 1 cut(s) 1958
HspAI GCGC 3 cut(s) 832, 1416, 1833
Ksp22I TGATCA 2 cut(s) 925, 1848
Kzo9I GATC 7 cut(s) 169, 190, 778, 925, 954, 1109, 1848
LguI GCTCTTC 1 cut(s) 753
LmnI GCTCC 3 cut(s) 1566, 1577, 1986
Lsp1109I GCAGC 9 cut(s) 250, 292, 862, 1060, 1154, 1258, 1459, 1696, 1708
LweI GCATC 3 cut(s) 91, 739, 1591
MabI ACCWGGT 1 cut(s) 385
MaeI CTAG 4 cut(s) 24, 614, 1449, 1743
MaeII ACGT 6 cut(s) 150, 884, 1213, 1219, 1789, 1958
MaeIII GTNAC 1 cut(s) 151
MalI GATC 7 cut(s) 171, 192, 780, 927, 956, 1111, 1850
MboI GATC 7 cut(s) 169, 190, 778, 925, 954, 1109, 1848
MflI RGATCY 1 cut(s) 1109
MhlI GDGCHC 2 cut(s) 1563, 1991
MluCI AATT 5 cut(s) 270, 689, 783, 1286, 1309
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 1964
MseI TTAA 7 cut(s) 141, 204, 701, 788, 1062, 1358, 1998
MslI CAYNNNNRTG 2 cut(s) 1253, 1643
MspA1I CMGCKG 1 cut(s) 1145
MspR9I CCNGG 2 cut(s) 387, 1424
Mva1269I GAATGC 3 cut(s) 673, 834, 1075
MvaI CCWGG 2 cut(s) 387, 1424
MvnI CGCG 1 cut(s) 1833
MwoI GCNNNNNNNGC 6 cut(s) 464, 739, 859, 1415, 1718, 1727
NdeII GATC 7 cut(s) 169, 190, 778, 925, 954, 1109, 1848
PaeR7I CTCGAG 2 cut(s) 603, 1010
PagI TCATGA 1 cut(s) 813
PciSI GCTCTTC 1 cut(s) 753
PctI GAATGC 3 cut(s) 673, 834, 1075
PflMI CCANNNNNTGG 2 cut(s) 1361, 1949
PkrI GCNGC 9 cut(s) 265, 282, 852, 1075, 1144, 1273, 1474, 1711, 1723
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
PpuMI RGGWCCY 1 cut(s) 1746
PshAI GACNNNNGTC 1 cut(s) 1486
Psp124BI GAGCTC 1 cut(s) 1563
Psp1406I AACGTT 1 cut(s) 884
Psp5II RGGWCCY 1 cut(s) 1746
Psp6I CCWGG 2 cut(s) 385, 1422
PspGI CCWGG 2 cut(s) 385, 1422
PspPI GGNCC 3 cut(s) 1590, 1746, 1940
PspPPI RGGWCCY 1 cut(s) 1746
PstNI CAGNNNCTG 1 cut(s) 1580
PsuI RGATCY 1 cut(s) 1109
PvuII CAGCTG 1 cut(s) 1145
RsaI GTAC 5 cut(s) 22, 637, 936, 1569, 1917
RsaNI GTAC 5 cut(s) 21, 636, 935, 1568, 1916
RseI CAYNNNNRTG 2 cut(s) 1253, 1643
SacI GAGCTC 1 cut(s) 1563
SapI GCTCTTC 1 cut(s) 753
SaqAI TTAA 7 cut(s) 141, 204, 701, 788, 1062, 1358, 1998
SatI GCNGC 9 cut(s) 264, 281, 851, 1074, 1143, 1272, 1473, 1710, 1722
Sau3AI GATC 7 cut(s) 169, 190, 778, 925, 954, 1109, 1848
Sau96I GGNCC 3 cut(s) 1590, 1746, 1940
ScaI AGTACT 2 cut(s) 22, 1569
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 2 cut(s) 387, 1424
SduI GDGCHC 2 cut(s) 1563, 1991
SexAI ACCWGGT 1 cut(s) 385
SfaNI GCATC 3 cut(s) 91, 739, 1591
Sfr274I CTCGAG 2 cut(s) 603, 1010
SinI GGWCC 3 cut(s) 1590, 1746, 1940
SlaI CTCGAG 2 cut(s) 603, 1010
SmiMI CAYNNNNRTG 2 cut(s) 1253, 1643
SmlI CTYRAG 5 cut(s) 521, 603, 899, 1010, 1277
SmoI CTYRAG 5 cut(s) 521, 603, 899, 1010, 1277
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 5 cut(s) 270, 689, 783, 1286, 1309
SsiI CCGC 3 cut(s) 309, 467, 1046
SspMI CTAG 4 cut(s) 24, 614, 1449, 1743
SstI GAGCTC 1 cut(s) 1563
StyD4I CCNGG 2 cut(s) 385, 1422
TaaI ACNGT 4 cut(s) 184, 1162, 1777, 1949
TaiI ACGT 6 cut(s) 153, 887, 1216, 1222, 1792, 1961
TaqI TCGA 8 cut(s) 99, 135, 189, 557, 604, 1011, 1480, 1837
TasI AATT 5 cut(s) 270, 689, 783, 1286, 1309
TatI WGTACW 3 cut(s) 20, 934, 1567
Tru1I TTAA 7 cut(s) 141, 204, 701, 788, 1062, 1358, 1998
Tru9I TTAA 7 cut(s) 141, 204, 701, 788, 1062, 1358, 1998
TseI GCWGC 9 cut(s) 263, 280, 850, 1073, 1142, 1271, 1472, 1709, 1721
TspGWI ACGGA 1 cut(s) 1561
Van91I CCANNNNNTGG 2 cut(s) 1361, 1949
VpaK11BI GGWCC 3 cut(s) 1590, 1746, 1940
XhoI CTCGAG 2 cut(s) 603, 1010
XspI CTAG 4 cut(s) 24, 614, 1449, 1743
ZraI GACGTC 1 cut(s) 1959
ZrmI AGTACT 2 cut(s) 22, 1569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.