Rorug07G0184900

Something about silencing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
15472047 .. 15474062
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0184900.1

Sequence Viewer

Length: 1863 bp
ATGGCTATGGCTACAAAATGTGAGGGTCCAACGATTGGTATCGACCTCGGAACAACTTACTCATGTGTGGGAGTTTGGCAACACGGTCGTGTTGAGATTATAGCTAATGATCAGGGCAATAGAACAACACCGTCTTACGTTGCTTTTACGAACAGTGGGCGTTTAATTGGTGATGCAGCCAAGAATCAAGTCTCCAAGAACCCCATCAACACTGTATTTGATGCAAAGCGCTTGATCGGTAGGAAATTCAGCGATGCCTCTGTTAAGAGTGACATGAAGTTGTGGCCTTTCAAGGTTCGTGGTGTCGGGGATAAACCCATGATTGTGGTTAACTACAAGAATGTTGAGAAAAAATTTGCTGCTGAAGAGATATCTTCCATGATTCTCGTTAAGATGCGTGAAATAGCAGAAGCCTACATCGGATCGACAGTAAATAATGCTGTTGTAACTGTTCCAGCATACTTCAATGATTTTCAACGTCAGGCCACAAAGGATGCCGGTGTAATTGCAGGGATGAATATTATCCGTATCATCAATGAGCCAACCGCTGCCGCCATTGCCTATGGTCTTGACAGAAAGGGAAATACTGTTGGCGGAAAGAACGTTCTTATATTTGATCTTGGTGGTGGTACATTCGATGTTTCCCTTCTCAAGATTGAAGAGGGAATTTTTGAGGTGAAAGCTACAGCTGGAGATACTCATCTTGGAGGTGAAGATTTTGACAATAGAATGGTGAATCATTTCGTACAAGAGTTCAAGAGAAAACATGAAAAAGATATCAGTAAGAACCCCAGAGCACTAAGGAGATTGAAAACATCTTGTGAAAGAGCAAAGAGAACTCTTTCTTCTACCTCTCAAACTACCATTGAGATTGATTCTTTATTTGAAGATATTGACTTTTACTCCACAATAACAAGAGCAAAATTTGAGGATATCAACTTGGATCTCTTTATAAAATGTATGGAGCCTGTGGACAAGTGTTTGAGAGATGCTAAAATGGACAAAAGCATTGTTCATGATGTTGTTCTTGTTGGGGGATCTACTAGAATCCCAAAAATACGACAACTATTACAAGATCTTTTTAATGGTAAGGAGCTTTGCAAGAGCATCAATCCTGATGAAGCGGTTGCATATGGTGCGACCGTACAAGCTGCAATTTTGAGCATTGAGGGATATAATGAGAAAGTTCAAGACTTGCTATTGTTGGATGTCACTCCACTTACTCTTGGTTGCGAGGATTATAAAGGACATATGACTATTGTTGTCCCAAGAAACACTACCATCCCTACCAAGAAACAACGATCTGTCACAACCATTGAAACTGCACAATCATGTATCAAGTTTGATGTGTATGAGGGGGAAAGTCCAATAGCCAAACAGAACAGATTGTTGGGTACATTTATGCTTTCACACATCCGTCCTGCTTCAAAGCGAGTTCCTGATATCAGCATTTGCTTTGAGATTGATGCCAATGGAATCTTGATTGTCTCCGCCGAGGAAAAATCAACAAATAATAAGAGCAAGATCACAATCACCAATAACAACAAAGGCAGCTTATGCAAGGAGGAAATTGAGAAGATGGTCGATGAGGCAAAGAAGTACATGTCCGATGATGATGATTACAAGAAGAAAATGGAGGCTATGGTTGCATTAGAAAACTATGCAACCAACAAGATGGACACAGTTCATAATCGCTCAAACCTCAACCAAGAAGACAAGAAAAGAATTGTGGATGCGGTTGAAAAGGTCCTCGAGTGGCTCGATGAGAATGAGAATCATCTTGCTGAATGTGAAGAATATGAGGATAAGCTGAGAAAGCTCGATAACTTGTGCAGTCCCATACTGAATGACATGAATGAATAA

Protein Analysis

620

Amino Acids

69.31

Weight (kDa)

6.01

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 12 - 618 5.3e-225 Hsp70 protein
MreB_Mbl PF06723 127 - 381 1.4e-13 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 953, 1242
AccB7I CCANNNNNTGG 1 cut(s) 35
AciI CCGC 6 cut(s) 546, 552, 594, 1124, 1491, 1736
AclI AACGTT 1 cut(s) 603
AclWI GGATC 3 cut(s) 430, 951, 1045
AcsI RAATTY 4 cut(s) 245, 353, 666, 923
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 5 cut(s) 631, 747, 1146, 1396, 1601
AfeI AGCGCT 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 1602
AjuI GAANNNNNNNTTGG 2 cut(s) 1373, 1405
AleI CACNNNNGTG 1 cut(s) 87
AloI GAACNNNNNNTCC 2 cut(s) 588, 620
AluBI AGCT 8 cut(s) 104, 683, 689, 1096, 1151, 1554, 1810, 1819
AluI AGCT 8 cut(s) 104, 683, 689, 1096, 1151, 1554, 1810, 1819
Alw21I GWGCWC 1 cut(s) 799
Alw26I GTCTC 2 cut(s) 196, 1492
AlwI GGATC 3 cut(s) 430, 951, 1045
Ama87I CYCGRG 1 cut(s) 1751
Aor51HI AGCGCT 1 cut(s) 230
AoxI GGCC 2 cut(s) 284, 483
ApeKI GCWGC 5 cut(s) 176, 359, 548, 1151, 1551
ApoI RAATTY 4 cut(s) 245, 353, 666, 923
Asp700I GAANNNNTTC 2 cut(s) 740, 841
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 26, 1747
AsuHPI GGTGA 5 cut(s) 182, 688, 722, 745, 1525
AvaI CYCGRG 1 cut(s) 1751
AvaII GGWCC 2 cut(s) 26, 1747
BbsI GAAGAC 1 cut(s) 1719
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 5 cut(s) 188, 346, 535, 1138, 1563
BccI CCATC 4 cut(s) 212, 1289, 1573, 1669
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 196, 1492
BfaI CTAG 1 cut(s) 1044
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 1 cut(s) 232
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 6 cut(s) 177, 360, 549, 552, 1152, 1552
BlsI GCNGC 6 cut(s) 178, 361, 550, 553, 1153, 1553
Bme18I GGWCC 2 cut(s) 26, 1747
BmeT110I CYCGRG 1 cut(s) 1751
BmgT120I GGNCC 2 cut(s) 26, 1747
BmiI GGNNCC 2 cut(s) 27, 966
BmsI GCATC 9 cut(s) 163, 211, 244, 384, 484, 979, 1116, 1456, 1723
BpiI GAAGAC 1 cut(s) 1719
BpmI CTGGAG 1 cut(s) 711
BpuEI CTTGAG 1 cut(s) 635
BsaBI GATNNNNATC 3 cut(s) 38, 699, 1529
BsaJI CCNNGG 2 cut(s) 46, 1494
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 555
Bse8I GATNNNNATC 3 cut(s) 38, 699, 1529
BseDI CCNNGG 2 cut(s) 46, 1494
BseGI GGATG 6 cut(s) 499, 519, 1213, 1281, 1413, 1738
BseJI GATNNNNATC 3 cut(s) 38, 699, 1529
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 1 cut(s) 1802
BseXI GCAGC 5 cut(s) 188, 346, 535, 1138, 1563
BsgI GTGCAG 2 cut(s) 1308, 1852
Bsh1285I CGRYCG 2 cut(s) 88, 1143
BshFI GGCC 2 cut(s) 286, 485
BsiEI CGRYCG 2 cut(s) 88, 1143
BsiHKAI GWGCWC 1 cut(s) 799
BsiHKCI CYCGRG 1 cut(s) 1751
BsiSI CCGG 1 cut(s) 498
BslFI GGGAC 2 cut(s) 1250, 1821
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 2 cut(s) 196, 1492
BsmFI GGGAC 2 cut(s) 1250, 1821
BsnI GGCC 2 cut(s) 286, 485
BsoBI CYCGRG 1 cut(s) 1751
Bsp1286I GDGCHC 1 cut(s) 799
Bsp143I GATC 9 cut(s) 109, 234, 422, 616, 943, 1037, 1075, 1301, 1524
BspACI CCGC 6 cut(s) 546, 552, 594, 1124, 1491, 1736
BspANI GGCC 2 cut(s) 286, 485
BspCNI CTCAG 1 cut(s) 1803
BspHI TCATGA 1 cut(s) 1015
BspLI GGNNCC 2 cut(s) 27, 966
BspPI GGATC 3 cut(s) 430, 951, 1045
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 2 cut(s) 46, 1494
BssMI GATC 9 cut(s) 109, 234, 422, 616, 943, 1037, 1075, 1301, 1524
Bst4CI ACNGT 9 cut(s) 86, 132, 155, 214, 430, 451, 589, 1144, 1684
Bst6I CTCTTC 2 cut(s) 360, 654
BstAPI GCANNNNNTGC 2 cut(s) 1136, 1557
BstDEI CTNAG 2 cut(s) 800, 1811
BstF5I GGATG 6 cut(s) 499, 519, 1213, 1281, 1413, 1738
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 9 cut(s) 112, 237, 425, 619, 946, 1040, 1078, 1304, 1527
BstMAI GTCTC 2 cut(s) 196, 1492
BstMBI GATC 9 cut(s) 109, 234, 422, 616, 943, 1037, 1075, 1301, 1524
BstMCI CGRYCG 2 cut(s) 88, 1143
BstMWI GCNNNNNNNGC 5 cut(s) 557, 1136, 1557, 1646, 1816
BstNSI RCATGY 1 cut(s) 1606
BstSFI CTRYAG 1 cut(s) 684
BstV1I GCAGC 5 cut(s) 188, 346, 535, 1138, 1563
BstV2I GAAGAC 1 cut(s) 1719
BstX2I RGATCY 3 cut(s) 943, 1037, 1075
BstXI CCANNNNNNTGG 2 cut(s) 325, 1675
BstYI RGATCY 3 cut(s) 943, 1037, 1075
BsuRI GGCC 2 cut(s) 286, 485
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 6 cut(s) 499, 519, 1213, 1281, 1413, 1738
BtsIMutI CAGTG 2 cut(s) 160, 210
CciI TCATGA 1 cut(s) 1015
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 2 cut(s) 26, 1747
Csp6I GTAC 5 cut(s) 630, 746, 1145, 1395, 1600
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 9 cut(s) 63, 274, 319, 379, 767, 1016, 1332, 1603, 1852
CviQI GTAC 5 cut(s) 630, 746, 1145, 1395, 1600
DdeI CTNAG 2 cut(s) 800, 1811
DpnI GATC 9 cut(s) 111, 236, 424, 618, 945, 1039, 1077, 1303, 1526
DpnII GATC 9 cut(s) 109, 234, 422, 616, 943, 1037, 1075, 1301, 1524
Eam1104I CTCTTC 2 cut(s) 360, 654
EarI CTCTTC 2 cut(s) 360, 654
EciI GGCGGA 2 cut(s) 609, 1480
Eco32I GATATC 4 cut(s) 372, 778, 934, 1444
Eco47I GGWCC 2 cut(s) 26, 1747
Eco47III AGCGCT 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 1751
EcoO109I RGGNCCY 1 cut(s) 1747
EcoRV GATATC 4 cut(s) 372, 778, 934, 1444
FaeI CATG 9 cut(s) 66, 277, 322, 382, 770, 1019, 1335, 1606, 1855
FaqI GGGAC 2 cut(s) 1250, 1821
FatI CATG 9 cut(s) 62, 273, 318, 378, 766, 1015, 1331, 1602, 1851
FauNDI CATATG 2 cut(s) 1132, 1251
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 6 cut(s) 177, 360, 549, 552, 1152, 1552
FokI GGATG 6 cut(s) 506, 526, 1220, 1268, 1400, 1745
Fsp4HI GCNGC 6 cut(s) 177, 360, 549, 552, 1152, 1552
FspBI CTAG 1 cut(s) 1044
GlaI GCGC 1 cut(s) 230
GluI GCNGC 6 cut(s) 177, 360, 549, 552, 1152, 1552
GsuI CTGGAG 1 cut(s) 711
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 2 cut(s) 286, 485
HapII CCGG 1 cut(s) 498
HhaI GCGC 1 cut(s) 231
Hin1II CATG 9 cut(s) 66, 277, 322, 382, 770, 1019, 1335, 1606, 1855
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 7 cut(s) 184, 382, 736, 875, 1047, 1476, 1774
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 1 cut(s) 498
HphI GGTGA 5 cut(s) 182, 688, 722, 745, 1525
Hpy166II GTNNAC 2 cut(s) 331, 973
Hpy188I TCNGA 3 cut(s) 50, 422, 1609
Hpy188III TCNNGA 8 cut(s) 569, 652, 757, 1016, 1115, 1190, 1439, 1480
Hpy8I GTNNAC 2 cut(s) 331, 973
HpyAV CCTTC 1 cut(s) 656
HpyCH4III ACNGT 9 cut(s) 86, 132, 155, 214, 430, 451, 589, 1144, 1684
HpyCH4IV ACGT 3 cut(s) 138, 478, 603
HpyF10VI GCNNNNNNNGC 5 cut(s) 557, 1136, 1557, 1646, 1816
HpyF3I CTNAG 2 cut(s) 800, 1811
HpySE526I ACGT 3 cut(s) 138, 478, 603
Hsp92II CATG 9 cut(s) 66, 277, 322, 382, 770, 1019, 1335, 1606, 1855
HspAI GCGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 109
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 9 cut(s) 109, 234, 422, 616, 943, 1037, 1075, 1301, 1524
LmnI GCTCC 2 cut(s) 964, 1093
Lsp1109I GCAGC 5 cut(s) 188, 346, 535, 1138, 1563
LweI GCATC 9 cut(s) 163, 211, 244, 384, 484, 979, 1116, 1456, 1723
MaeI CTAG 1 cut(s) 1044
MaeII ACGT 3 cut(s) 138, 478, 603
MaeIII GTNAC 4 cut(s) 269, 445, 1210, 1306
MalI GATC 9 cut(s) 111, 236, 424, 618, 945, 1039, 1077, 1303, 1526
MboI GATC 9 cut(s) 109, 234, 422, 616, 943, 1037, 1075, 1301, 1524
MflI RGATCY 3 cut(s) 943, 1037, 1075
MhlI GDGCHC 1 cut(s) 799
MluCI AATT 9 cut(s) 165, 245, 353, 504, 666, 923, 1155, 1569, 1725
MmeI TCCRAC 2 cut(s) 53, 1185
MroXI GAANNNNTTC 2 cut(s) 740, 841
MseI TTAA 5 cut(s) 164, 264, 330, 390, 1083
MslI CAYNNNNRTG 3 cut(s) 87, 323, 1330
MspA1I CMGCKG 2 cut(s) 548, 689
MspI CCGG 1 cut(s) 498
MwoI GCNNNNNNNGC 5 cut(s) 557, 1136, 1557, 1646, 1816
NdeI CATATG 2 cut(s) 1132, 1251
NdeII GATC 9 cut(s) 109, 234, 422, 616, 943, 1037, 1075, 1301, 1524
NlaIII CATG 9 cut(s) 66, 277, 322, 382, 770, 1019, 1335, 1606, 1855
NlaIV GGNNCC 2 cut(s) 27, 966
NmeAIII GCCGAG 1 cut(s) 1519
NmuCI GTSAC 3 cut(s) 269, 1210, 1306
NspI RCATGY 1 cut(s) 1606
OliI CACNNNNGTG 1 cut(s) 87
PaeR7I CTCGAG 1 cut(s) 1751
PagI TCATGA 1 cut(s) 1015
PciI ACATGT 1 cut(s) 1602
PcsI WCGNNNNNNNCGW 1 cut(s) 1758
PdmI GAANNNNTTC 2 cut(s) 740, 841
PfeI GAWTC 7 cut(s) 184, 382, 736, 875, 1047, 1476, 1774
PflMI CCANNNNNTGG 1 cut(s) 35
PkrI GCNGC 6 cut(s) 178, 361, 550, 553, 1153, 1553
PpuMI RGGWCCY 1 cut(s) 1747
PscI ACATGT 1 cut(s) 1602
PsiI TTATAA 2 cut(s) 953, 1242
Psp1406I AACGTT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 1747
PspN4I GGNNCC 2 cut(s) 27, 966
PspPI GGNCC 2 cut(s) 26, 1747
PspPPI RGGWCCY 1 cut(s) 1747
PspXI VCTCGAGB 1 cut(s) 1751
PsuI RGATCY 3 cut(s) 943, 1037, 1075
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 5 cut(s) 631, 747, 1146, 1396, 1601
RsaNI GTAC 5 cut(s) 630, 746, 1145, 1395, 1600
RseI CAYNNNNRTG 3 cut(s) 87, 323, 1330
SaqAI TTAA 5 cut(s) 164, 264, 330, 390, 1083
SatI GCNGC 6 cut(s) 177, 360, 549, 552, 1152, 1552
Sau3AI GATC 9 cut(s) 109, 234, 422, 616, 943, 1037, 1075, 1301, 1524
Sau96I GGNCC 2 cut(s) 26, 1747
SduI GDGCHC 1 cut(s) 799
SfaNI GCATC 9 cut(s) 163, 211, 244, 384, 484, 979, 1116, 1456, 1723
SfcI CTRYAG 1 cut(s) 684
Sfr274I CTCGAG 1 cut(s) 1751
SinI GGWCC 2 cut(s) 26, 1747
SlaI CTCGAG 1 cut(s) 1751
SmiMI CAYNNNNRTG 3 cut(s) 87, 323, 1330
SmlI CTYRAG 2 cut(s) 650, 1751
SmoI CTYRAG 2 cut(s) 650, 1751
Sse9I AATT 9 cut(s) 165, 245, 353, 504, 666, 923, 1155, 1569, 1725
SsiI CCGC 6 cut(s) 546, 552, 594, 1124, 1491, 1736
SspI AATATT 1 cut(s) 520
SspMI CTAG 1 cut(s) 1044
TaaI ACNGT 9 cut(s) 86, 132, 155, 214, 430, 451, 589, 1144, 1684
TaiI ACGT 3 cut(s) 141, 481, 606
TaqI TCGA 7 cut(s) 42, 425, 636, 1584, 1752, 1761, 1821
TasI AATT 9 cut(s) 165, 245, 353, 504, 666, 923, 1155, 1569, 1725
TatI WGTACW 1 cut(s) 1599
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 7 cut(s) 184, 382, 736, 875, 1047, 1476, 1774
Tru1I TTAA 5 cut(s) 164, 264, 330, 390, 1083
Tru9I TTAA 5 cut(s) 164, 264, 330, 390, 1083
TscAI CASTG 2 cut(s) 160, 217
TseFI GTSAC 3 cut(s) 269, 1210, 1306
TseI GCWGC 5 cut(s) 176, 359, 548, 1151, 1551
Tsp45I GTSAC 3 cut(s) 269, 1210, 1306
TspDTI ATGAA 6 cut(s) 290, 530, 783, 1004, 1134, 1676
TspGWI ACGGA 2 cut(s) 515, 1406
TspRI CASTG 2 cut(s) 160, 217
Van91I CCANNNNNTGG 1 cut(s) 35
VpaK11BI GGWCC 2 cut(s) 26, 1747
XapI RAATTY 4 cut(s) 245, 353, 666, 923
XceI RCATGY 1 cut(s) 1606
XhoI CTCGAG 1 cut(s) 1751
XmnI GAANNNNTTC 2 cut(s) 740, 841
XspI CTAG 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.