Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003767.1

Orthogroup ID

OG0011442

Physical Location & Seq

Genomic Coordinates Reverse (-)

46202 .. 52492

Gene Structure 6291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003767.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

atgggtaagagaggaaagagtagtcagagaaaaggcaatgaaaaccctactaagacaaagttccatgccgttgaagacgacatggatgatgaagtcgatgcctttatgaaacaaagagatattgttcccctcgaccttaatcaaaacgttacagattccgatgaagataacgagcagacagtcttcgatcttcagaatgttaatgacgacgaggaagaggaagatgaagacgacgatgacatccccgatactggaatggctgcaaaaattgttaggcagcagaagtttatgagggcgaagtttggcggagttgaggatgaaatgcttgatgaagaagaagaagaagaagaagaggaagaaaagccaatatggggtggaaggagacctggttatcatggtggcgataatcgtgattttgaggaaaaatcaagcgacgatgactctgctgaagaggaagcgagagaagcggagaggattcggagagaaaaggcaaagtcatcaacacgagaagactttgggcttgaggatgatagtgaagatgagagtaatagggaatcgacttttgaggaaatgtcagttcatggaaaaagtgaaaaaaggtctcgagtgatactagaagtagcagatgacatgggtacagcttatgaggaggtcaagaaagatttgaatgctttgtcaaaggaggaacaattatctgttttaaacaatactgtaccggagctggttggtttgctggcagagctgaatgatgcacttgaagagcttgaaaacagagttgatccaattttaatcaaggttagaaggggtgaggtcatgatggaaggaggaatgcgctatttagaggtgaagcagcttcttctgctggcgtattcccaagcaataacgttctaccttcttctcaagtctgaaggccaacaagttcgtgatcatcctgtacttgctcgccttgtagagatcaagagtttattggataagatgaagcaactggatgagaatcttccatctgatctcgaggaaatcataaacaaatataatgggatggaagcggtggtgaaatcggttaaagagaatgctgcaaaaccatcggatacttttgctaaaggatacaggtcccaacttgtctcacttgaaccaaaagaagcagctgcgttgcataacacagtccagatggaaaaggtgaagtatctgaaggatgatgcaaaagtgggaaaacgtaaacgtcagagtgatgaagttggttcacagagcatgaaaatgttgaaagtaagagctgcccttgaggaaaaattgaagcagaagggtgttttcaattccatcactccaagaactgatagaccccagaaacatctgaagccattaaatgggaagcttgaatcgtatgatgattttgatgatgaccctgtaaatgctgaaggcgctgaccagggtcgtgcaagttcattgagtgctagtaaagtttcccaacttgttgctgctaatcgacataagtcaaagattgtttcaggcgatgatgacttacctcagagagatgatattggggaaagacggagaaaacatgagctccgagtactggcaggagctggaatcaagtccgaggatgatgctggagaaaatgacactatttcagatgatggagacattgagatggaggatagtgaagctggagattcagaagatgacttttacgaacaagcaaaacaaaaccgagctgcaaaactcgctgccaaagctgacatccattctaggtcctcctcagttccatctttgcctgaaactgtggatggcaaacgtcatattacttatcagatggagaagaacagaggacttactcgcgctcgaaagaagctgatcaagaatccaagaaagaaatacaagttgaagcatgagaagaaaatgaagaatcggaaaggacaggtacgggaagtcaagaagcctattggtccatacggtggggagacatctggaatcaatccgagaatcagtcggagcaccagatttaagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10 Sas10_Utp3

Protein Analysis

668

Amino Acids

75.71

Weight (kDa)

5.05

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43650
fragaria_vesca	FvH4_5g27692 FvH4_5g27692 FvH4_5g27692
malus_domestica	MD04G1048900.v1.1 MD17G1177700.v1.1
prunus_persica	Prupe.1G206800_v2.0.a1
pyrus_communis	pycom04g04300
rosa_chinensis	RchiOBHm_Chr7g0219421
rosa_laevigata	RLG00000002290
rosa_multiflora	Rmu_sc0002460.1_g000021 Rmu_sc0003767.1_g000014
rosa_roxburghii	Rroxscaffold_3G00240050
rosa_rugosa	Rorug07G0184900
rosa_samantha	Rh7AG327800 Rh7BG317800 Rh7CG345200 Rh7DG323200
rosa_wichuraiana	Rw7G027650 Rw7G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1361, 1949
AccII	CGCG	1 cut(s)	1833
AciI	CCGC	3 cut(s)	306, 467, 1046
AclI	AACGTT	2 cut(s)	147, 884
AclWI	GGATC	1 cut(s)	773
AcuI	CTGAAG	6 cut(s)	176, 468, 927, 1208, 1370, 1431
AfaI	GTAC	5 cut(s)	637, 714, 936, 1569, 1917
AfiI	CCNNNNNNNGG	5 cut(s)	251, 371, 1361, 1570, 1949
AjnI	CCWGG	2 cut(s)	385, 1422
Alw21I	GWGCWC	2 cut(s)	1563, 1991
Alw26I	GTCTC	5 cut(s)	376, 606, 1126, 1629, 1949
AlwI	GGATC	1 cut(s)	773
AlwNI	CAGNNNCTG	1 cut(s)	1580
Ama87I	CYCGRG	2 cut(s)	603, 1010
AoxI	GGCC	1 cut(s)	910
AspLEI	GCGC	3 cut(s)	834, 1418, 1835
AspS9I	GGNCC	3 cut(s)	1110, 1746, 1940
AsuHPI	GGTGA	4 cut(s)	818, 856, 1063, 1189
AvaI	CYCGRG	2 cut(s)	603, 1010
AvaII	GGWCC	3 cut(s)	1110, 1746, 1940
BanII	GRGCYC	1 cut(s)	1563
BauI	CACGAG	1 cut(s)	504
BbsI	GAAGAC	4 cut(s)	81, 175, 234, 516
Bbv12I	GWGCWC	2 cut(s)	1563, 1991
BceAI	ACGGC	1 cut(s)	53
BcgI	CGANNNNNNTGC	6 cut(s)	425, 459, 1065, 1099, 1583, 1617
BciT130I	CCWGG	2 cut(s)	387, 1424
BciVI	GTATCC	2 cut(s)	1081, 1097
BclI	TGATCA	2 cut(s)	925, 1848
BcoDI	GTCTC	5 cut(s)	376, 606, 1126, 1629, 1949
BfaI	CTAG	3 cut(s)	614, 1449, 1743
BfoI	RGCGCY	1 cut(s)	1419
BfuI	GTATCC	2 cut(s)	1081, 1097
BmcAI	AGTACT	1 cut(s)	1569
Bme1390I	CCNGG	2 cut(s)	387, 1424
Bme18I	GGWCC	3 cut(s)	1110, 1746, 1940
BmeT110I	CYCGRG	2 cut(s)	603, 1010
BmgT120I	GGNCC	3 cut(s)	1110, 1746, 1940
BmiI	GGNNCC	1 cut(s)	1112
BmrFI	CCNGG	2 cut(s)	387, 1424
BmsI	GCATC	4 cut(s)	88, 739, 1186, 1591
BoxI	GACNNNNGTC	2 cut(s)	1425, 1486
BpiI	GAAGAC	4 cut(s)	81, 175, 234, 516
BpmI	CTGGAG	2 cut(s)	1626, 1683
BpuEI	CTTGAG	3 cut(s)	542, 884, 1298
BsaBI	GATNNNNATC	1 cut(s)	993
BsaI	GGTCTC	2 cut(s)	376, 606
BsaJI	CCNNGG	2 cut(s)	1423, 1593
BsaWI	WCCGGW	1 cut(s)	715
BsaXI	ACNNNNNCTCC	4 cut(s)	373, 403, 1545, 1575
Bsc4I	CCNNNNNNNGG	5 cut(s)	251, 371, 1361, 1570, 1949
Bse1I	ACTGG	3 cut(s)	256, 990, 1575
Bse3DI	GCAATG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	993
BseBI	CCWGG	2 cut(s)	387, 1424
BseDI	CCNNGG	2 cut(s)	1423, 1593
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	5 cut(s)	251, 371, 1361, 1570, 1949
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	1535, 1767
BseNI	ACTGG	3 cut(s)	256, 990, 1575
BseRI	GAGGAG	2 cut(s)	662, 1741
Bsh1236I	CGCG	1 cut(s)	1833
BshFI	GGCC	1 cut(s)	912
BsiHKAI	GWGCWC	2 cut(s)	1563, 1991
BsiHKCI	CYCGRG	2 cut(s)	603, 1010
BsiSI	CCGG	1 cut(s)	716
BslFI	GGGAC	1 cut(s)	1096
BslI	CCNNNNNNNGG	5 cut(s)	251, 371, 1361, 1570, 1949
BsmAI	GTCTC	5 cut(s)	376, 606, 1126, 1629, 1949
BsmFI	GGGAC	1 cut(s)	1096
BsmI	GAATGC	3 cut(s)	673, 834, 1075
BsnI	GGCC	1 cut(s)	912
Bso31I	GGTCTC	2 cut(s)	376, 606
BsoBI	CYCGRG	2 cut(s)	603, 1010
Bsp1286I	GDGCHC	2 cut(s)	1563, 1991
Bsp143I	GATC	6 cut(s)	187, 778, 925, 954, 1006, 1848
BspACI	CCGC	3 cut(s)	306, 467, 1046
BspANI	GGCC	1 cut(s)	912
BspCNI	CTCAG	2 cut(s)	1534, 1766
BspFNI	CGCG	1 cut(s)	1833
BspHI	TCATGA	1 cut(s)	813
BspLI	GGNNCC	1 cut(s)	1112
BspPI	GGATC	1 cut(s)	773
BspQI	GCTCTTC	1 cut(s)	753
BspTNI	GGTCTC	2 cut(s)	376, 606
BsrDI	GCAATG	1 cut(s)	43
BsrI	ACTGG	3 cut(s)	256, 990, 1575
BssECI	CCNNGG	2 cut(s)	1423, 1593
BssMI	GATC	6 cut(s)	187, 778, 925, 954, 1006, 1848
BssSI	CACGAG	1 cut(s)	504
Bst2BI	CACGAG	1 cut(s)	504
Bst2UI	CCWGG	2 cut(s)	387, 1424
Bst4CI	ACNGT	5 cut(s)	181, 712, 1162, 1777, 1949
Bst6I	CTCTTC	4 cut(s)	210, 345, 444, 753
BstC8I	GCNNGC	3 cut(s)	735, 864, 943
BstDEI	CTNAG	3 cut(s)	51, 1521, 1753
BstFNI	CGCG	1 cut(s)	1833
BstH2I	RGCGCY	1 cut(s)	1419
BstHHI	GCGC	3 cut(s)	834, 1418, 1835
BstKTI	GATC	6 cut(s)	190, 781, 928, 957, 1009, 1851
BstMAI	GTCTC	5 cut(s)	376, 606, 1126, 1629, 1949
BstMBI	GATC	6 cut(s)	187, 778, 925, 954, 1006, 1848
BstMWI	GCNNNNNNNGC	6 cut(s)	464, 739, 859, 1415, 1718, 1727
BstNI	CCWGG	2 cut(s)	387, 1424
BstPAI	GACNNNNGTC	2 cut(s)	1425, 1486
BstSCI	CCNGG	2 cut(s)	385, 1422
BstUI	CGCG	1 cut(s)	1833
BstV2I	GAAGAC	4 cut(s)	81, 175, 234, 516
BsuI	GTATCC	2 cut(s)	1081, 1097
BsuRI	GGCC	1 cut(s)	912
BtgZI	GCGATG	1 cut(s)	1521
Cac8I	GCNNGC	3 cut(s)	735, 864, 943
CaiI	CAGNNNCTG	1 cut(s)	1580
CciI	TCATGA	1 cut(s)	813
CfoI	GCGC	3 cut(s)	834, 1418, 1835
Cfr13I	GGNCC	3 cut(s)	1110, 1746, 1940
CsiI	ACCWGGT	1 cut(s)	385
Csp6I	GTAC	5 cut(s)	636, 713, 935, 1568, 1916
CviAII	CATG	9 cut(s)	65, 82, 395, 581, 631, 814, 1249, 1556, 1883
CviQI	GTAC	5 cut(s)	636, 713, 935, 1568, 1916
DdeI	CTNAG	3 cut(s)	51, 1521, 1753
DpnI	GATC	6 cut(s)	189, 780, 927, 956, 1008, 1850
DpnII	GATC	6 cut(s)	187, 778, 925, 954, 1006, 1848
DraI	TTTAAA	1 cut(s)	702
Eam1104I	CTCTTC	4 cut(s)	210, 345, 444, 753
EarI	CTCTTC	4 cut(s)	210, 345, 444, 753
EciI	GGCGGA	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	1561
Eco24I	GRGCYC	1 cut(s)	1563
Eco31I	GGTCTC	2 cut(s)	376, 606
Eco47I	GGWCC	3 cut(s)	1110, 1746, 1940
Eco53kI	GAGCTC	1 cut(s)	1561
Eco57I	CTGAAG	6 cut(s)	176, 468, 927, 1208, 1370, 1431
Eco88I	CYCGRG	2 cut(s)	603, 1010
EcoICRI	GAGCTC	1 cut(s)	1561
EcoO109I	RGGNCCY	2 cut(s)	1110, 1746
EcoRII	CCWGG	2 cut(s)	385, 1422
EcoT38I	GRGCYC	1 cut(s)	1563
FaeI	CATG	9 cut(s)	68, 85, 398, 584, 634, 817, 1252, 1559, 1886
FaqI	GGGAC	1 cut(s)	1096
FatI	CATG	9 cut(s)	64, 81, 394, 580, 630, 813, 1248, 1555, 1882
FbaI	TGATCA	2 cut(s)	925, 1848
FriOI	GRGCYC	1 cut(s)	1563
FspBI	CTAG	3 cut(s)	614, 1449, 1743
GlaI	GCGC	3 cut(s)	833, 1417, 1834
GsuI	CTGGAG	2 cut(s)	1626, 1683
HaeII	RGCGCY	1 cut(s)	1419
HaeIII	GGCC	1 cut(s)	912
HapII	CCGG	1 cut(s)	716
HhaI	GCGC	3 cut(s)	834, 1418, 1835
Hin1II	CATG	9 cut(s)	68, 85, 398, 584, 634, 817, 1252, 1559, 1886
Hin6I	GCGC	3 cut(s)	832, 1416, 1833
HinP1I	GCGC	3 cut(s)	832, 1416, 1833
HindIII	AAGCTT	1 cut(s)	1367
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	4 cut(s)	818, 856, 1063, 1189
Hpy166II	GTNNAC	2 cut(s)	1217, 1241
Hpy8I	GTNNAC	2 cut(s)	1217, 1241
Hpy99I	CGWCG	3 cut(s)	212, 236, 437
HpyAV	CCTTC	8 cut(s)	372, 795, 815, 902, 902, 1183, 1291, 1406
HpyCH4III	ACNGT	5 cut(s)	181, 712, 1162, 1777, 1949
HpyCH4IV	ACGT	5 cut(s)	147, 884, 1213, 1219, 1789
HpyCH4V	TGCA	7 cut(s)	263, 752, 1076, 1153, 1199, 1433, 1712
HpyF10VI	GCNNNNNNNGC	6 cut(s)	464, 739, 859, 1415, 1718, 1727
HpyF3I	CTNAG	3 cut(s)	51, 1521, 1753
HpySE526I	ACGT	5 cut(s)	147, 884, 1213, 1219, 1789
Hsp92II	CATG	9 cut(s)	68, 85, 398, 584, 634, 817, 1252, 1559, 1886
HspAI	GCGC	3 cut(s)	832, 1416, 1833
Ksp22I	TGATCA	2 cut(s)	925, 1848
Kzo9I	GATC	6 cut(s)	187, 778, 925, 954, 1006, 1848
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	4 cut(s)	718, 1566, 1577, 1986
LweI	GCATC	4 cut(s)	88, 739, 1186, 1591
MabI	ACCWGGT	1 cut(s)	385
MaeI	CTAG	3 cut(s)	614, 1449, 1743
MaeII	ACGT	5 cut(s)	147, 884, 1213, 1219, 1789
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	6 cut(s)	189, 780, 927, 956, 1008, 1850
MboI	GATC	6 cut(s)	187, 778, 925, 954, 1006, 1848
MhlI	GDGCHC	2 cut(s)	1563, 1991
MluCI	AATT	5 cut(s)	267, 689, 783, 1286, 1309
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	1964
MseI	TTAA	7 cut(s)	138, 201, 701, 788, 1062, 1358, 1998
MslI	CAYNNNNRTG	2 cut(s)	1253, 1643
MspA1I	CMGCKG	1 cut(s)	1145
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	2 cut(s)	387, 1424
Mva1269I	GAATGC	3 cut(s)	673, 834, 1075
MvaI	CCWGG	2 cut(s)	387, 1424
MvnI	CGCG	1 cut(s)	1833
MwoI	GCNNNNNNNGC	6 cut(s)	464, 739, 859, 1415, 1718, 1727
NdeII	GATC	6 cut(s)	187, 778, 925, 954, 1006, 1848
NlaIII	CATG	9 cut(s)	68, 85, 398, 584, 634, 817, 1252, 1559, 1886
NlaIV	GGNNCC	1 cut(s)	1112
PaeR7I	CTCGAG	2 cut(s)	603, 1010
PagI	TCATGA	1 cut(s)	813
PciSI	GCTCTTC	1 cut(s)	753
PctI	GAATGC	3 cut(s)	673, 834, 1075
PflMI	CCANNNNNTGG	2 cut(s)	1361, 1949
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
PpuMI	RGGWCCY	2 cut(s)	1110, 1746
PshAI	GACNNNNGTC	2 cut(s)	1425, 1486
Psp124BI	GAGCTC	1 cut(s)	1563
Psp1406I	AACGTT	2 cut(s)	147, 884
Psp5II	RGGWCCY	2 cut(s)	1110, 1746
Psp6I	CCWGG	2 cut(s)	385, 1422
PspGI	CCWGG	2 cut(s)	385, 1422
PspN4I	GGNNCC	1 cut(s)	1112
PspPI	GGNCC	3 cut(s)	1110, 1746, 1940
PspPPI	RGGWCCY	2 cut(s)	1110, 1746
PstNI	CAGNNNCTG	1 cut(s)	1580
PvuII	CAGCTG	1 cut(s)	1145
RsaI	GTAC	5 cut(s)	637, 714, 936, 1569, 1917
RsaNI	GTAC	5 cut(s)	636, 713, 935, 1568, 1916
RseI	CAYNNNNRTG	2 cut(s)	1253, 1643
SacI	GAGCTC	1 cut(s)	1563
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	7 cut(s)	138, 201, 701, 788, 1062, 1358, 1998
Sau3AI	GATC	6 cut(s)	187, 778, 925, 954, 1006, 1848
Sau96I	GGNCC	3 cut(s)	1110, 1746, 1940
ScaI	AGTACT	1 cut(s)	1569
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	387, 1424
SduI	GDGCHC	2 cut(s)	1563, 1991
SexAI	ACCWGGT	1 cut(s)	385
SfaNI	GCATC	4 cut(s)	88, 739, 1186, 1591
Sfr274I	CTCGAG	2 cut(s)	603, 1010
SinI	GGWCC	3 cut(s)	1110, 1746, 1940
SlaI	CTCGAG	2 cut(s)	603, 1010
SmiMI	CAYNNNNRTG	2 cut(s)	1253, 1643
SmlI	CTYRAG	5 cut(s)	521, 603, 899, 1010, 1277
SmoI	CTYRAG	5 cut(s)	521, 603, 899, 1010, 1277
Sse9I	AATT	5 cut(s)	267, 689, 783, 1286, 1309
SsiI	CCGC	3 cut(s)	306, 467, 1046
SspMI	CTAG	3 cut(s)	614, 1449, 1743
SstI	GAGCTC	1 cut(s)	1563
StyD4I	CCNGG	2 cut(s)	385, 1422
TaaI	ACNGT	5 cut(s)	181, 712, 1162, 1777, 1949
TaiI	ACGT	5 cut(s)	150, 887, 1216, 1222, 1792
TaqI	TCGA	8 cut(s)	96, 132, 186, 557, 604, 1011, 1480, 1837
TasI	AATT	5 cut(s)	267, 689, 783, 1286, 1309
TatI	WGTACW	2 cut(s)	934, 1567
Tru1I	TTAA	7 cut(s)	138, 201, 701, 788, 1062, 1358, 1998
Tru9I	TTAA	7 cut(s)	138, 201, 701, 788, 1062, 1358, 1998
TspGWI	ACGGA	1 cut(s)	1561
Van91I	CCANNNNNTGG	2 cut(s)	1361, 1949
VpaK11BI	GGWCC	3 cut(s)	1110, 1746, 1940
XhoI	CTCGAG	2 cut(s)	603, 1010
XspI	CTAG	3 cut(s)	614, 1449, 1743
ZrmI	AGTACT	1 cut(s)	1569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.