MD17G1177700.v1.1

Something about silencing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
20305276 .. 20316970
11695 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1177700.v1.1.491

Sequence Viewer

Length: 1920 bp
ATGGATGACGAAATTGATGCCTTTCACAAACAAAGAGATATAATTCCTCTTGATGTTAATGAAGAGGATGAAGATTCCGATGAAGACAACGAGCAACCCGTCTTTGGTTTGGAGAATATTCATGATGACGACGACGACAATGACGTTGATGATGAGCAGGATACCGGCTTTTCTGCAAAAATTGTTAGGCAGCAGAAGTTCTTAAGGGAGAAGTTTGGTGCTGAGGATGATTTGCATGATGATGAAGAAAACGAGGAAGAAGAAAAGCCTGTATGGGGTGGAAAGAAGCAAAACTATTATGGTGTTGATAATGGCGATTTTGAGCAAAAATCAAGTGATGATGAATCTGCTGAAGAGGAAGAAGCAGAAGTGGTGAGGCTGCAGAAAGAAAGGGCAAAATTTTCAACGCTGGATGACTATGGGCTTGACGATATTTGCGAAAATGAGAATAATAAGGAATTAACTTTTGAGGAAGTTTCAATGAAGGGAAACAGTACAAAAAGGTTTCCAATGGAAATTGATGTTGCAGATGGCACGGGTACAGCTTATGAGGAGGTGAAGAAAGATTTGAGTGCCTTGTCAAAGGAGGAGCAAATGGATGTTTTATATAATTCCACACCAGAATTAGTTGGGTTGTTGTCAGAGCTGAATGATGCACATGAAGAGCTTGAAAGAAAAGTTAATCCACTTCTGGGCAAGGTTAAAAAAGGGGAGGTCATGTTGGAAGGAGGGATGCGCTATTTGGAGATTAAGCAGCTTCTTCTGCTTTCCTATTGCCAAGCAATAACATTCTACCTTCTTCTCAAGTCTGAAGGACAACCAGTTCGTGACCATCCAGTACTTGCTCGCCTCATAGAGATCAAGATTTTGTTGGATAAGATGAAGCAACTTGATGGGAATCTACCATCTGATTTTGAGGAAATTTTAAACAAATATAATGGGGTGGAAGAGGTGGCAAAGTCTGGTAAAAAGACTTCTATTGACGCATCTGATTCTTTTGGTAAAGAATACAAACCCCAGCCTATCTTGGTTGAGGAAGAAGAAGCAACTGTGTTGCATGACATTGCTAAGGTAGAAATAGTGGAGCCTCTGAAGGATAATGAAAACAAGGTGGGAAAACACAAATTTCAGAATGATGAAGTTGGTGTACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAGTTGAAGCAGAAGGGTGTCTTCAGTTCCATCGCTCTGAAAACTGATAAACCCAGGAAACTTCTGAAGCCATTGAATGGGAAGCTTGAATCATATGATGATTTTGATGATGACACTGTAAATATTGAGGGTGGCGTCCATGGATTGAACAATGGTCGTGCAAGTAAACTCTCCCAACTTGCTGCTAATCCAAATAAGTCCAAGAAGGCTATCTCAGGTGATGATGATTTACCTCGGCGAGATGATATTGGGGAAAGGCGGAGAAAACATGAGCTTCGAGTGCTTGCAGGAGCTGGAATCAAGTCTCAGGATGACGCTGGAGATGAAGATGGCACTATTTCGGATGATGGAGATGTGGAGATGGAGGATAGTGAAACTGGAGATTCAGAAGATGACTTCTACGAACAAGTGAAAGAAAAACGAGCTGCAAAACTTGCTGCCAAAGCTGAGATTTATTCGAGGTCCTCGATGGTTCCATCTTTGGTGGAAACTGAAACTGTTGATGGGAAACGCCATATTACTTATCAGATGGAGAAGAACAGGGGACTTACTCGTGCTCGTAAGAAGCTGATCAAGAATCCAAGAAAGAAGTACAAGTTGAAGCACCAGAAGGCAGTGAAGAGTAGAAAAGGACAGGTAAGAGAGGTGAGGAAGCCTTTAGGTCCGTATGGTGGAGAGGCCACCGGAATCAATGCAGGAATCAGTCGGAGCACCAGATTCAAGAACTAA

Protein Analysis

640

Amino Acids

72.23

Weight (kDa)

4.83

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 213 - 293 2.8e-19 Sas10/Utp3/C1D family
Sas10 PF09368 565 - 637 4.7e-27 Sas10 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1268
AciI CCGC 1 cut(s) 1450
AcsI RAATTY 3 cut(s) 398, 921, 1124
AcuI CTGAAG 5 cut(s) 372, 831, 1112, 1198, 1277
AcyI GRCGYC 1 cut(s) 1326
AfaI GTAC 5 cut(s) 496, 541, 840, 1149, 1784
AfiI CCNNNNNNNGG 5 cut(s) 104, 275, 692, 1268, 1862
AflII CTTAAG 1 cut(s) 202
AjnI CCWGG 1 cut(s) 1244
AloI GAACNNNNNNTCC 2 cut(s) 807, 839
Alw21I GWGCWC 2 cut(s) 1750, 1904
Alw26I GTCTC 1 cut(s) 1500
AlwNI CAGNNNCTG 1 cut(s) 1484
AoxI GGCC 1 cut(s) 1869
ApeKI GCWGC 7 cut(s) 190, 379, 754, 1178, 1373, 1616, 1628
ApoI RAATTY 3 cut(s) 398, 921, 1124
ArsI GACNNNNNNTTYG 2 cut(s) 807, 839
AspLEI GCGC 1 cut(s) 738
AspS9I GGNCC 2 cut(s) 1653, 1853
AsuHPI GGTGA 4 cut(s) 385, 568, 1421, 1849
AvaII GGWCC 2 cut(s) 1653, 1853
BarI GAAGNNNNNNTAC 4 cut(s) 958, 990, 1131, 1163
BauI CACGAG 1 cut(s) 1743
BbsI GAAGAC 2 cut(s) 90, 1204
Bbv12I GWGCWC 2 cut(s) 1750, 1904
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 7 cut(s) 202, 366, 766, 1165, 1360, 1603, 1615
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 1246
BciVI GTATCC 1 cut(s) 154
BclI TGATCA 1 cut(s) 1761
BcoDI GTCTC 1 cut(s) 1500
BfmI CTRYAG 1 cut(s) 380
BfrI CTTAAG 1 cut(s) 202
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 7 cut(s) 191, 380, 755, 1179, 1374, 1617, 1629
BlsI GCNGC 7 cut(s) 192, 381, 756, 1180, 1375, 1618, 1630
BmcAI AGTACT 1 cut(s) 840
Bme1390I CCNGG 1 cut(s) 1246
Bme18I GGWCC 2 cut(s) 1653, 1853
BmgT120I GGNCC 2 cut(s) 1653, 1853
BmiI GGNNCC 2 cut(s) 1086, 1665
BmrFI CCNGG 1 cut(s) 1246
BmsI GCATC 4 cut(s) 7, 643, 723, 995
BpiI GAAGAC 2 cut(s) 90, 1204
BpmI CTGGAG 2 cut(s) 1530, 1590
Bpu10I CCTNAGC 2 cut(s) 222, 1068
BpuEI CTTGAG 2 cut(s) 788, 1205
BsaBI GATNNNNATC 1 cut(s) 897
BsaHI GRCGYC 1 cut(s) 1326
BsaJI CCNNGG 3 cut(s) 1244, 1330, 1424
BsaWI WCCGGW 1 cut(s) 1874
BsaXI ACNNNNNCTCC 2 cut(s) 704, 734
Bsc4I CCNNNNNNNGG 5 cut(s) 104, 275, 692, 1268, 1862
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 3 cut(s) 821, 836, 1573
Bse3DI GCAATG 1 cut(s) 1062
Bse8I GATNNNNATC 1 cut(s) 897
BseBI CCWGG 1 cut(s) 1246
BseDI CCNNGG 3 cut(s) 1244, 1330, 1424
BseGI GGATG 9 cut(s) 10, 73, 232, 418, 604, 738, 832, 1507, 1540
BseJI GATNNNNATC 1 cut(s) 897
BseLI CCNNNNNNNGG 5 cut(s) 104, 275, 692, 1268, 1862
BseMI GCAATG 1 cut(s) 1062
BseMII CTCAG 4 cut(s) 213, 1419, 1511, 1629
BseNI ACTGG 3 cut(s) 821, 836, 1573
BseRI GAGGAG 2 cut(s) 566, 602
BseXI GCAGC 7 cut(s) 202, 366, 766, 1165, 1360, 1603, 1615
BseYI CCCAGC 1 cut(s) 1017
BshFI GGCC 1 cut(s) 1871
BsiHKAI GWGCWC 2 cut(s) 1750, 1904
BsiSI CCGG 2 cut(s) 165, 1875
BslFI GGGAC 1 cut(s) 1749
BslI CCNNNNNNNGG 5 cut(s) 104, 275, 692, 1268, 1862
BsmAI GTCTC 1 cut(s) 1500
BsmFI GGGAC 1 cut(s) 1749
BsnI GGCC 1 cut(s) 1871
Bsp1286I GDGCHC 2 cut(s) 1750, 1904
Bsp1407I TGTACA 1 cut(s) 1147
Bsp143I GATC 2 cut(s) 858, 1761
Bsp19I CCATGG 1 cut(s) 1330
BspACI CCGC 1 cut(s) 1450
BspANI GGCC 1 cut(s) 1871
BspCNI CTCAG 4 cut(s) 214, 1418, 1510, 1630
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 1086, 1665
BspMAI CTGCAG 1 cut(s) 384
BspQI GCTCTTC 1 cut(s) 657
BspTI CTTAAG 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 1062
BsrFI RCCGGY 1 cut(s) 164
BsrGI TGTACA 1 cut(s) 1147
BsrI ACTGG 3 cut(s) 821, 836, 1573
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 3 cut(s) 1244, 1330, 1424
BssMI GATC 2 cut(s) 858, 1761
BssNI GRCGYC 1 cut(s) 1326
BssSI CACGAG 1 cut(s) 1743
BssT1I CCWWGG 1 cut(s) 1330
Bst2BI CACGAG 1 cut(s) 1743
Bst2UI CCWGG 1 cut(s) 1246
Bst4CI ACNGT 4 cut(s) 494, 1051, 1309, 1690
Bst6I CTCTTC 5 cut(s) 57, 348, 657, 942, 1805
BstACI GRCGYC 1 cut(s) 1326
BstAFI CTTAAG 1 cut(s) 202
BstAPI GCANNNNNTGC 1 cut(s) 1625
BstAUI TGTACA 1 cut(s) 1147
BstC8I GCNNGC 2 cut(s) 847, 1476
BstDEI CTNAG 5 cut(s) 222, 1068, 1405, 1497, 1638
BstDSI CCRYGG 1 cut(s) 1330
BstF5I GGATG 9 cut(s) 10, 73, 232, 418, 604, 738, 832, 1507, 1540
BstHHI GCGC 1 cut(s) 738
BstKTI GATC 2 cut(s) 861, 1764
BstMAI GTCTC 1 cut(s) 1500
BstMBI GATC 2 cut(s) 858, 1761
BstMWI GCNNNNNNNGC 4 cut(s) 763, 1471, 1625, 1634
BstNI CCWGG 1 cut(s) 1246
BstSCI CCNGG 1 cut(s) 1244
BstSFI CTRYAG 1 cut(s) 380
BstV1I GCAGC 7 cut(s) 202, 366, 766, 1165, 1360, 1603, 1615
BstV2I GAAGAC 2 cut(s) 90, 1204
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 1871
BtgI CCRYGG 1 cut(s) 1330
BtgZI GCGATG 1 cut(s) 1207
BtsCI GGATG 9 cut(s) 10, 73, 232, 418, 604, 738, 832, 1507, 1540
BtsI GCAGTG 1 cut(s) 1812
BtsIMutI CAGTG 2 cut(s) 1305, 1812
Cac8I GCNNGC 2 cut(s) 847, 1476
CaiI CAGNNNCTG 1 cut(s) 1484
CciI TCATGA 1 cut(s) 121
CfoI GCGC 1 cut(s) 738
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 1653, 1853
CseI GACGC 3 cut(s) 992, 1315, 1514
Csp6I GTAC 5 cut(s) 495, 540, 839, 1148, 1783
CviAII CATG 8 cut(s) 122, 236, 659, 718, 1058, 1156, 1331, 1460
CviQI GTAC 5 cut(s) 495, 540, 839, 1148, 1783
DdeI CTNAG 5 cut(s) 222, 1068, 1405, 1497, 1638
DpnI GATC 2 cut(s) 860, 1763
DpnII GATC 2 cut(s) 858, 1761
DraI TTTAAA 1 cut(s) 927
Eam1104I CTCTTC 5 cut(s) 57, 348, 657, 942, 1805
EarI CTCTTC 5 cut(s) 57, 348, 657, 942, 1805
EciI GGCGGA 1 cut(s) 1465
Eco130I CCWWGG 1 cut(s) 1330
Eco47I GGWCC 2 cut(s) 1653, 1853
Eco57I CTGAAG 5 cut(s) 372, 831, 1112, 1198, 1277
EcoO109I RGGNCCY 1 cut(s) 1653
EcoRII CCWGG 1 cut(s) 1244
EcoT14I CCWWGG 1 cut(s) 1330
ErhI CCWWGG 1 cut(s) 1330
FaeI CATG 8 cut(s) 125, 239, 662, 721, 1061, 1159, 1334, 1463
FalI AAGNNNNNCTT 2 cut(s) 1196, 1228
FaqI GGGAC 1 cut(s) 1749
FatI CATG 8 cut(s) 121, 235, 658, 717, 1057, 1155, 1330, 1459
FauNDI CATATG 1 cut(s) 1285
FbaI TGATCA 1 cut(s) 1761
Fnu4HI GCNGC 7 cut(s) 191, 380, 755, 1179, 1374, 1617, 1629
FokI GGATG 9 cut(s) 17, 80, 239, 425, 611, 745, 819, 1514, 1547
Fsp4HI GCNGC 7 cut(s) 191, 380, 755, 1179, 1374, 1617, 1629
GlaI GCGC 1 cut(s) 737
GluI GCNGC 7 cut(s) 191, 380, 755, 1179, 1374, 1617, 1629
GsaI CCCAGC 1 cut(s) 1021
GsuI CTGGAG 2 cut(s) 1530, 1590
HaeIII GGCC 1 cut(s) 1871
HapII CCGG 2 cut(s) 165, 1875
HgaI GACGC 3 cut(s) 992, 1315, 1514
HhaI GCGC 1 cut(s) 738
Hin1I GRCGYC 1 cut(s) 1326
Hin1II CATG 8 cut(s) 125, 239, 662, 721, 1061, 1159, 1334, 1463
Hin6I GCGC 1 cut(s) 736
HinP1I GCGC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 1274
HpaII CCGG 2 cut(s) 165, 1875
HphI GGTGA 4 cut(s) 385, 568, 1421, 1849
Hpy166II GTNNAC 2 cut(s) 1148, 1358
Hpy188III TCNNGA 7 cut(s) 50, 122, 827, 862, 1499, 1765, 1912
Hpy8I GTNNAC 2 cut(s) 1148, 1358
Hpy99I CGWCG 2 cut(s) 134, 137
HpyAV CCTTC 8 cut(s) 478, 719, 806, 806, 1087, 1198, 1390, 1795
HpyCH4III ACNGT 4 cut(s) 494, 1051, 1309, 1690
HpyCH4IV ACGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 4 cut(s) 763, 1471, 1625, 1634
HpyF3I CTNAG 5 cut(s) 222, 1068, 1405, 1497, 1638
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 1326
Hsp92II CATG 8 cut(s) 125, 239, 662, 721, 1061, 1159, 1334, 1463
HspAI GCGC 1 cut(s) 736
Ksp22I TGATCA 1 cut(s) 1761
Kzo9I GATC 2 cut(s) 858, 1761
LguI GCTCTTC 1 cut(s) 657
LmnI GCTCC 4 cut(s) 589, 1084, 1481, 1899
Lsp1109I GCAGC 7 cut(s) 202, 366, 766, 1165, 1360, 1603, 1615
LweI GCATC 4 cut(s) 7, 643, 723, 995
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 827
MalI GATC 2 cut(s) 860, 1763
MboI GATC 2 cut(s) 858, 1761
MhlI GDGCHC 2 cut(s) 1750, 1904
MmeI TCCRAC 3 cut(s) 702, 852, 1877
MseI TTAA 7 cut(s) 57, 203, 461, 681, 702, 750, 926
MslI CAYNNNNRTG 2 cut(s) 240, 1160
MspCI CTTAAG 1 cut(s) 202
MspI CCGG 2 cut(s) 165, 1875
MspR9I CCNGG 1 cut(s) 1246
MvaI CCWGG 1 cut(s) 1246
MwoI GCNNNNNNNGC 4 cut(s) 763, 1471, 1625, 1634
NcoI CCATGG 1 cut(s) 1330
NdeI CATATG 1 cut(s) 1285
NdeII GATC 2 cut(s) 858, 1761
NlaIII CATG 8 cut(s) 125, 239, 662, 721, 1061, 1159, 1334, 1463
NlaIV GGNNCC 2 cut(s) 1086, 1665
NmeAIII GCCGAG 1 cut(s) 1405
NmuCI GTSAC 1 cut(s) 827
PagI TCATGA 1 cut(s) 121
PciSI GCTCTTC 1 cut(s) 657
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 141, 435, 1655
PflMI CCANNNNNTGG 1 cut(s) 1268
PkrI GCNGC 7 cut(s) 192, 381, 756, 1180, 1375, 1618, 1630
PpuMI RGGWCCY 1 cut(s) 1653
Psp5II RGGWCCY 1 cut(s) 1653
Psp6I CCWGG 1 cut(s) 1244
PspFI CCCAGC 1 cut(s) 1017
PspGI CCWGG 1 cut(s) 1244
PspN4I GGNNCC 2 cut(s) 1086, 1665
PspPI GGNCC 2 cut(s) 1653, 1853
PspPPI RGGWCCY 1 cut(s) 1653
PstI CTGCAG 1 cut(s) 384
PstNI CAGNNNCTG 1 cut(s) 1484
RsaI GTAC 5 cut(s) 496, 541, 840, 1149, 1784
RsaNI GTAC 5 cut(s) 495, 540, 839, 1148, 1783
RseI CAYNNNNRTG 2 cut(s) 240, 1160
SapI GCTCTTC 1 cut(s) 657
SaqAI TTAA 7 cut(s) 57, 203, 461, 681, 702, 750, 926
SatI GCNGC 7 cut(s) 191, 380, 755, 1179, 1374, 1617, 1629
Sau3AI GATC 2 cut(s) 858, 1761
Sau96I GGNCC 2 cut(s) 1653, 1853
ScaI AGTACT 1 cut(s) 840
ScrFI CCNGG 1 cut(s) 1246
SduI GDGCHC 2 cut(s) 1750, 1904
SfaNI GCATC 4 cut(s) 7, 643, 723, 995
SfcI CTRYAG 1 cut(s) 380
SinI GGWCC 2 cut(s) 1653, 1853
SmiMI CAYNNNNRTG 2 cut(s) 240, 1160
SmlI CTYRAG 3 cut(s) 202, 803, 1184
SmoI CTYRAG 3 cut(s) 202, 803, 1184
SsiI CCGC 1 cut(s) 1450
SspI AATATT 2 cut(s) 118, 1315
StyD4I CCNGG 1 cut(s) 1244
StyI CCWWGG 1 cut(s) 1330
TaaI ACNGT 4 cut(s) 494, 1051, 1309, 1690
TaiI ACGT 1 cut(s) 147
TaqI TCGA 3 cut(s) 1468, 1649, 1658
TatI WGTACW 4 cut(s) 494, 838, 1147, 1782
Tru1I TTAA 7 cut(s) 57, 203, 461, 681, 702, 750, 926
Tru9I TTAA 7 cut(s) 57, 203, 461, 681, 702, 750, 926
TscAI CASTG 2 cut(s) 1312, 1812
TseFI GTSAC 1 cut(s) 827
TseI GCWGC 7 cut(s) 190, 379, 754, 1178, 1373, 1616, 1628
Tsp45I GTSAC 1 cut(s) 827
TspGWI ACGGA 1 cut(s) 1845
TspRI CASTG 2 cut(s) 1312, 1812
Van91I CCANNNNNTGG 1 cut(s) 1268
Vha464I CTTAAG 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 1653, 1853
XapI RAATTY 3 cut(s) 398, 921, 1124
ZrmI AGTACT 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.