Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0011442

Physical Location & Seq

Genomic Coordinates Forward (+)

38961584 .. 38968301

Gene Structure 6718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG345200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1698 bp

ATGAGGGCGAAGTTTGGCGGAGTTGAGGATGAAATGCTTGATGAAGAAGAAGAAGAAGAAGAAAAGCCGATATGGGGTGGAAGGAGACCTGGTTATCATGGTGGCGATAATCGTGATTTTGAGGAAAAATCAAGCGACGATGACTCTGCTGAAGAGGAAGCGAGAGAAGCGGAGAGGATTCGGAGAGAAAAGGCAAAGTCATCAACACGAGAAGACTTTGGGCTTGAGGATGATAGTGAAGATGAGAGTAATAGGGAATCGACTTTTGAGGAAATGTCAGTTCATGGAAAAAGTGAAAAAAAGTCTCGAGTGATACTAGAAGTAGCAGATGACATGGGTACAGCTTATGAGGAGGTCAAGAAAGATTTGAATGCTTTGTCAAAGGAGGAACAATTATCTGTTTTAAACAATACTGCACCAGAGCTGGTTGGTTTGCTGGCAGAGCTGAATGATGCACTTGAAGAGCTTGAAAACAGAGTTGATCCAATTTTAATCAAGGTTAGAAGGGGTGAGGTCATGATGGAAGGAGGAATGCGCTATTTAGAGGTGAAGCAGCTTCTTCTGCTGGCGTATTCCCAAGCAATAACGTTTTACCTTCTTCTCAAGTCTGAAGGCCAACAAGTTCGTGATCATCCTGTACTTGCTCGCCTTGTAGAGATCAAGAGTTTATTGGATAAGATGAAGCAACTGGATGAGAATCTTCCATCTGATCTCGAGGAAATCATAAACAAATATAATGGGATGGAAGCGGTGGTGAAATCGGTTAAAGAGAATGCTGCAAAACCATCGGATACTTTTGCTAAAGGATACAGGTCCCAACTTGTCTCACTTGAACCAAAAGAAACAGCTGTGTCGCATAACACAGTCCAGATGGAAAAGGTGAAGTCTCTGAAGGATGATGAAAAAGTGGGAAAACGTAAACGTCAGAGTGATGAAGTTGGTTCACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAATTGAAGCAGAAGGGTGTTTTCAATTCCATCACTCCAAGAACTGATAGACCCCAGAAACATCTGAAGCCATTAAATGGGAAGCTTGAATCGTATGATGATTTTGATGATGACCCTGTAAATGCTGAAGGTGCTAACCAGGGTCGTGCAAGTTCATTGAGTGCTAGTAAAGTTTCCCAACTTGTTGCTGCTAATCGACATAAGTCAAAGATTGTTTCAGGCGATGATGACTTACCTCAGAGAGATGATATTGGGGAAAGACGGAGAAAACATGAGCTCCGAGTACTGGCAGGAGCTGGAATCAAGTCCGAGGATGATGCTGGAGAAAATGACACTATTTCAGATGATGGAGACATTGAGATGGATGGAGATTCAGAAGATGACTTTTACGAACAAGCAAAACAAAACCGAGCTGCAAAACTCGCTGCCAAAGCTGACATCCATTCTAGGTCCTCCTCAGTTCCATCGTTGCCTGAAACTGTGGATGGCAAACGTCATATTACTTATCAGATGGAGAAGAACAGAGGACTTACTCGCGCTCGAAAGAAGCTGATCAAGAATCCAAGAAAGAAATACAAGTTGAAGCATGAGAAGAAAATGAAGAATCGGAAAGGACAGGTACGGGAAGTCAAGAAGCCTATTGGTCCATACGGTGGGGAGACATCTGGAATCAATCCGAGAATCAGTCGGAGCACCAGATTTAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10 Sas10_Utp3

Protein Analysis

565

Amino Acids

63.84

Weight (kDa)

5.77

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sas10_Utp3	PF04000	146 - 226	3.3e-19	Sas10/Utp3/C1D family
Sas10	PF09368	491 - 563	2.1e-26	Sas10 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43650
fragaria_vesca	FvH4_5g27692 FvH4_5g27692 FvH4_5g27692
malus_domestica	MD04G1048900.v1.1 MD17G1177700.v1.1
prunus_persica	Prupe.1G206800_v2.0.a1
pyrus_communis	pycom04g04300
rosa_chinensis	RchiOBHm_Chr7g0219421
rosa_laevigata	RLG00000002290
rosa_multiflora	Rmu_sc0002460.1_g000021 Rmu_sc0003767.1_g000014
rosa_roxburghii	Rroxscaffold_3G00240050
rosa_rugosa	Rorug07G0184900
rosa_samantha	Rh7AG327800 Rh7BG317800 Rh7CG345200 Rh7DG323200
rosa_wichuraiana	Rw7G027650 Rw7G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1064, 1640
AccII	CGCG	1 cut(s)	1524
AciI	CCGC	3 cut(s)	18, 170, 749
AclI	AACGTT	1 cut(s)	587
AclWI	GGATC	1 cut(s)	476
AcuI	CTGAAG	5 cut(s)	171, 630, 911, 1073, 1134
AfaI	GTAC	4 cut(s)	340, 639, 1272, 1608
AfiI	CCNNNNNNNGG	4 cut(s)	74, 1064, 1273, 1640
AgsI	TTSAA	9 cut(s)	370, 461, 470, 833, 964, 994, 1012, 1076, 1570
AjnI	CCWGG	2 cut(s)	88, 1125
Alw21I	GWGCWC	2 cut(s)	1266, 1682
Alw26I	GTCTC	6 cut(s)	79, 309, 829, 891, 1332, 1640
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	1283
Ama87I	CYCGRG	2 cut(s)	306, 713
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	6 cut(s)	553, 776, 974, 1175, 1400, 1412
AspLEI	GCGC	2 cut(s)	537, 1526
AspS9I	GGNCC	3 cut(s)	813, 1437, 1631
AsuHPI	GGTGA	4 cut(s)	521, 559, 766, 892
AvaI	CYCGRG	2 cut(s)	306, 713
AvaII	GGWCC	3 cut(s)	813, 1437, 1631
BanII	GRGCYC	1 cut(s)	1266
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	1266, 1682
BbvI	GCAGC	6 cut(s)	565, 763, 961, 1162, 1387, 1399
BcgI	CGANNNNNNTGC	6 cut(s)	128, 162, 768, 802, 1286, 1320
BciT130I	CCWGG	2 cut(s)	90, 1127
BciVI	GTATCC	2 cut(s)	784, 800
BclI	TGATCA	2 cut(s)	628, 1539
BcoDI	GTCTC	6 cut(s)	79, 309, 829, 891, 1332, 1640
BfaI	CTAG	3 cut(s)	317, 1152, 1434
BfuI	GTATCC	2 cut(s)	784, 800
BisI	GCNGC	6 cut(s)	554, 777, 975, 1176, 1401, 1413
BlsI	GCNGC	6 cut(s)	555, 778, 976, 1177, 1402, 1414
BmcAI	AGTACT	1 cut(s)	1272
Bme1390I	CCNGG	2 cut(s)	90, 1127
Bme18I	GGWCC	3 cut(s)	813, 1437, 1631
BmeT110I	CYCGRG	2 cut(s)	306, 713
BmgT120I	GGNCC	3 cut(s)	813, 1437, 1631
BmiI	GGNNCC	1 cut(s)	815
BmrFI	CCNGG	2 cut(s)	90, 1127
BmsI	GCATC	2 cut(s)	442, 1294
BoxI	GACNNNNGTC	1 cut(s)	1189
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	1329
BpuEI	CTTGAG	3 cut(s)	245, 587, 1001
BsaBI	GATNNNNATC	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	1126, 1296
BsaXI	ACNNNNNCTCC	4 cut(s)	76, 106, 1248, 1278
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 1064, 1273, 1640
Bse1I	ACTGG	2 cut(s)	693, 1278
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	2 cut(s)	90, 1127
BseDI	CCNNGG	2 cut(s)	1126, 1296
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	4 cut(s)	74, 1064, 1273, 1640
BseMII	CTCAG	2 cut(s)	1238, 1458
BseNI	ACTGG	2 cut(s)	693, 1278
BseRI	GAGGAG	2 cut(s)	365, 1432
BseXI	GCAGC	6 cut(s)	565, 763, 961, 1162, 1387, 1399
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	1524
BshFI	GGCC	1 cut(s)	615
BsiHKAI	GWGCWC	2 cut(s)	1266, 1682
BsiHKCI	CYCGRG	2 cut(s)	306, 713
BslFI	GGGAC	1 cut(s)	799
BslI	CCNNNNNNNGG	4 cut(s)	74, 1064, 1273, 1640
BsmAI	GTCTC	6 cut(s)	79, 309, 829, 891, 1332, 1640
BsmFI	GGGAC	1 cut(s)	799
BsmI	GAATGC	3 cut(s)	376, 537, 778
BsnI	GGCC	1 cut(s)	615
Bso31I	GGTCTC	1 cut(s)	79
BsoBI	CYCGRG	2 cut(s)	306, 713
Bsp1286I	GDGCHC	2 cut(s)	1266, 1682
Bsp143I	GATC	5 cut(s)	481, 628, 657, 709, 1539
BspACI	CCGC	3 cut(s)	18, 170, 749
BspANI	GGCC	1 cut(s)	615
BspCNI	CTCAG	2 cut(s)	1237, 1457
BspFNI	CGCG	1 cut(s)	1524
BspHI	TCATGA	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	815
BspPI	GGATC	1 cut(s)	476
BspQI	GCTCTTC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	693, 1278
BssECI	CCNNGG	2 cut(s)	1126, 1296
BssMI	GATC	5 cut(s)	481, 628, 657, 709, 1539
BssSI	CACGAG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	90, 1127
Bst4CI	ACNGT	3 cut(s)	865, 1468, 1640
Bst6I	CTCTTC	2 cut(s)	147, 456
BstC8I	GCNNGC	3 cut(s)	438, 567, 646
BstDEI	CTNAG	2 cut(s)	1224, 1444
BstFNI	CGCG	1 cut(s)	1524
BstHHI	GCGC	2 cut(s)	537, 1526
BstKTI	GATC	5 cut(s)	484, 631, 660, 712, 1542
BstMAI	GTCTC	6 cut(s)	79, 309, 829, 891, 1332, 1640
BstMBI	GATC	5 cut(s)	481, 628, 657, 709, 1539
BstMWI	GCNNNNNNNGC	6 cut(s)	167, 442, 562, 1118, 1409, 1418
BstNI	CCWGG	2 cut(s)	90, 1127
BstPAI	GACNNNNGTC	1 cut(s)	1189
BstSCI	CCNGG	2 cut(s)	88, 1125
BstUI	CGCG	1 cut(s)	1524
BstV1I	GCAGC	6 cut(s)	565, 763, 961, 1162, 1387, 1399
BstV2I	GAAGAC	1 cut(s)	219
BsuI	GTATCC	2 cut(s)	784, 800
BsuRI	GGCC	1 cut(s)	615
BtgZI	GCGATG	1 cut(s)	1224
Cac8I	GCNNGC	3 cut(s)	438, 567, 646
CaiI	CAGNNNCTG	1 cut(s)	1283
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	2 cut(s)	537, 1526
Cfr13I	GGNCC	3 cut(s)	813, 1437, 1631
CsiI	ACCWGGT	1 cut(s)	88
Csp6I	GTAC	4 cut(s)	339, 638, 1271, 1607
CviAII	CATG	7 cut(s)	98, 284, 334, 517, 952, 1259, 1574
CviQI	GTAC	4 cut(s)	339, 638, 1271, 1607
DdeI	CTNAG	2 cut(s)	1224, 1444
DpnI	GATC	5 cut(s)	483, 630, 659, 711, 1541
DpnII	GATC	5 cut(s)	481, 628, 657, 709, 1539
DraI	TTTAAA	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	147, 456
EarI	CTCTTC	2 cut(s)	147, 456
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	1264
Eco24I	GRGCYC	1 cut(s)	1266
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	3 cut(s)	813, 1437, 1631
Eco53kI	GAGCTC	1 cut(s)	1264
Eco57I	CTGAAG	5 cut(s)	171, 630, 911, 1073, 1134
Eco88I	CYCGRG	2 cut(s)	306, 713
EcoICRI	GAGCTC	1 cut(s)	1264
EcoO109I	RGGNCCY	2 cut(s)	813, 1437
EcoRII	CCWGG	2 cut(s)	88, 1125
EcoT38I	GRGCYC	1 cut(s)	1266
FaeI	CATG	7 cut(s)	101, 287, 337, 520, 955, 1262, 1577
FaqI	GGGAC	1 cut(s)	799
FatI	CATG	7 cut(s)	97, 283, 333, 516, 951, 1258, 1573
FbaI	TGATCA	2 cut(s)	628, 1539
Fnu4HI	GCNGC	6 cut(s)	554, 777, 975, 1176, 1401, 1413
FriOI	GRGCYC	1 cut(s)	1266
Fsp4HI	GCNGC	6 cut(s)	554, 777, 975, 1176, 1401, 1413
FspBI	CTAG	3 cut(s)	317, 1152, 1434
GlaI	GCGC	2 cut(s)	536, 1525
GluI	GCNGC	6 cut(s)	554, 777, 975, 1176, 1401, 1413
GsuI	CTGGAG	1 cut(s)	1329
HaeIII	GGCC	1 cut(s)	615
HhaI	GCGC	2 cut(s)	537, 1526
Hin1II	CATG	7 cut(s)	101, 287, 337, 520, 955, 1262, 1577
Hin6I	GCGC	2 cut(s)	535, 1524
HinP1I	GCGC	2 cut(s)	535, 1524
HindIII	AAGCTT	1 cut(s)	1070
HphI	GGTGA	4 cut(s)	521, 559, 766, 892
Hpy166II	GTNNAC	2 cut(s)	920, 944
Hpy8I	GTNNAC	2 cut(s)	920, 944
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	8 cut(s)	75, 498, 518, 605, 605, 886, 994, 1109
HpyCH4III	ACNGT	3 cut(s)	865, 1468, 1640
HpyCH4IV	ACGT	4 cut(s)	587, 916, 922, 1480
HpyCH4V	TGCA	5 cut(s)	416, 455, 779, 1136, 1403
HpyF10VI	GCNNNNNNNGC	6 cut(s)	167, 442, 562, 1118, 1409, 1418
HpyF3I	CTNAG	2 cut(s)	1224, 1444
HpySE526I	ACGT	4 cut(s)	587, 916, 922, 1480
Hsp92II	CATG	7 cut(s)	101, 287, 337, 520, 955, 1262, 1577
HspAI	GCGC	2 cut(s)	535, 1524
Ksp22I	TGATCA	2 cut(s)	628, 1539
Kzo9I	GATC	5 cut(s)	481, 628, 657, 709, 1539
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	3 cut(s)	1269, 1280, 1677
Lsp1109I	GCAGC	6 cut(s)	565, 763, 961, 1162, 1387, 1399
LweI	GCATC	2 cut(s)	442, 1294
MabI	ACCWGGT	1 cut(s)	88
MaeI	CTAG	3 cut(s)	317, 1152, 1434
MaeII	ACGT	4 cut(s)	587, 916, 922, 1480
MalI	GATC	5 cut(s)	483, 630, 659, 711, 1541
MboI	GATC	5 cut(s)	481, 628, 657, 709, 1539
MhlI	GDGCHC	2 cut(s)	1266, 1682
MluCI	AATT	4 cut(s)	392, 486, 989, 1012
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	1655
MseI	TTAA	5 cut(s)	404, 491, 765, 1061, 1689
MslI	CAYNNNNRTG	2 cut(s)	956, 1346
MspA1I	CMGCKG	1 cut(s)	848
MspR9I	CCNGG	2 cut(s)	90, 1127
Mva1269I	GAATGC	3 cut(s)	376, 537, 778
MvaI	CCWGG	2 cut(s)	90, 1127
MvnI	CGCG	1 cut(s)	1524
MwoI	GCNNNNNNNGC	6 cut(s)	167, 442, 562, 1118, 1409, 1418
NdeII	GATC	5 cut(s)	481, 628, 657, 709, 1539
NlaIII	CATG	7 cut(s)	101, 287, 337, 520, 955, 1262, 1577
NlaIV	GGNNCC	1 cut(s)	815
PaeR7I	CTCGAG	2 cut(s)	306, 713
PagI	TCATGA	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	456
PctI	GAATGC	3 cut(s)	376, 537, 778
PflMI	CCANNNNNTGG	2 cut(s)	1064, 1640
PkrI	GCNGC	6 cut(s)	555, 778, 976, 1177, 1402, 1414
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PpuMI	RGGWCCY	2 cut(s)	813, 1437
PshAI	GACNNNNGTC	1 cut(s)	1189
Psp124BI	GAGCTC	1 cut(s)	1266
Psp1406I	AACGTT	1 cut(s)	587
Psp5II	RGGWCCY	2 cut(s)	813, 1437
Psp6I	CCWGG	2 cut(s)	88, 1125
PspGI	CCWGG	2 cut(s)	88, 1125
PspN4I	GGNNCC	1 cut(s)	815
PspPI	GGNCC	3 cut(s)	813, 1437, 1631
PspPPI	RGGWCCY	2 cut(s)	813, 1437
PstNI	CAGNNNCTG	1 cut(s)	1283
PvuII	CAGCTG	1 cut(s)	848
RsaI	GTAC	4 cut(s)	340, 639, 1272, 1608
RsaNI	GTAC	4 cut(s)	339, 638, 1271, 1607
RseI	CAYNNNNRTG	2 cut(s)	956, 1346
SacI	GAGCTC	1 cut(s)	1266
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	5 cut(s)	404, 491, 765, 1061, 1689
SatI	GCNGC	6 cut(s)	554, 777, 975, 1176, 1401, 1413
Sau3AI	GATC	5 cut(s)	481, 628, 657, 709, 1539
Sau96I	GGNCC	3 cut(s)	813, 1437, 1631
ScaI	AGTACT	1 cut(s)	1272
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	90, 1127
SduI	GDGCHC	2 cut(s)	1266, 1682
SexAI	ACCWGGT	1 cut(s)	88
SfaNI	GCATC	2 cut(s)	442, 1294
Sfr274I	CTCGAG	2 cut(s)	306, 713
SinI	GGWCC	3 cut(s)	813, 1437, 1631
SlaI	CTCGAG	2 cut(s)	306, 713
SmiMI	CAYNNNNRTG	2 cut(s)	956, 1346
SmlI	CTYRAG	5 cut(s)	224, 306, 602, 713, 980
SmoI	CTYRAG	5 cut(s)	224, 306, 602, 713, 980
Sse9I	AATT	4 cut(s)	392, 486, 989, 1012
SsiI	CCGC	3 cut(s)	18, 170, 749
SspMI	CTAG	3 cut(s)	317, 1152, 1434
SstI	GAGCTC	1 cut(s)	1266
StyD4I	CCNGG	2 cut(s)	88, 1125
TaaI	ACNGT	3 cut(s)	865, 1468, 1640
TaiI	ACGT	4 cut(s)	590, 919, 925, 1483
TaqI	TCGA	5 cut(s)	260, 307, 714, 1183, 1528
TasI	AATT	4 cut(s)	392, 486, 989, 1012
TatI	WGTACW	2 cut(s)	637, 1270
Tru1I	TTAA	5 cut(s)	404, 491, 765, 1061, 1689
Tru9I	TTAA	5 cut(s)	404, 491, 765, 1061, 1689
TseI	GCWGC	6 cut(s)	553, 776, 974, 1175, 1400, 1412
TspDTI	ATGAA	9 cut(s)	45, 57, 272, 695, 915, 948, 968, 1131, 1601
TspGWI	ACGGA	1 cut(s)	1264
Van91I	CCANNNNNTGG	2 cut(s)	1064, 1640
VpaK11BI	GGWCC	3 cut(s)	813, 1437, 1631
XhoI	CTCGAG	2 cut(s)	306, 713
XspI	CTAG	3 cut(s)	317, 1152, 1434
ZrmI	AGTACT	1 cut(s)	1272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.