Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002460.1

Orthogroup ID

OG0011442

Physical Location & Seq

Genomic Coordinates Forward (+)

72970 .. 79015

Gene Structure 6046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002460.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

atgggtaagagaggaaagagtactagtcagagaaaaggcaatgaaaaccctacgaagacaaagttccatgccgttgaagacgacatggatgatgaagtcgatgcctttatgaaacaaagagatattgttcccctcgaccttaatcaagacgttacagattccgatgaagataacgagcaaacagttttcgatcttcagaatgttaatgacgacgaggaagaggaagaggaagaggaagacgacgatgacatccccgatactggaatggctgcaaaaattgttaggcagcagaagtttatgagggcgaagtttggcggagttgacgatgaaatgcttgatgaagaagaagaagaagaagaggaagaaaagccgatatggggtggaaggagacctggttatcatggtggcgataatcgtgattttgaggaaaaatcaagcgatgatgactctgctgaagaggaagcgagagaagcggagaggattcggagagaaaaggcaaagtcatcaacacgagaagactttgggcttgaggatgatagtgaagatgagagtaatagggaatcgacttttgaggaaatgtcagttcatggaaaaagtgaaaaaaagtctcgagtgatactagaagtagcagatgacatgggtacagcttatgaggaggtcaagaaagatttgaatgctttgtcaaaggaggaacaattatctgttagaaggggtgaggtcatgatggaaggaggaatgcgctatttagaggtgaagcagcttcttctgctggcgtattcccaagcaataacgttctaccttcttctcaagtctgaaggccaacaagttcgtgatcatcctgtacttgctcgccttgtagagatcaagagtttattggataagatgaagcaactggatgagaatcttccatctgatctcgaggaaatcataaacaaatataatgggatggaagcggtggtgaaatcggttaaagagaatgctgcaaaaccatcggatacttttgctaaaggatacagatcccaacttgtctcacttgaaccaaaagaagcagctgtgtcgcataacacagtccagatggaaaaggtgaagtctctgaaggatgatgaaaaagtgggaaaacgtaaacgtcagagtgatgaagttggttcacagagcatgaaaatgttgaaagtaagagctgcccttgaggaaaaattgaagcagaagggtgttttcaattccatcactccaagaactgatagaccccagaaacatctgaaaccattaaatgggaagcttgaatcgtatgatgattttgatgatgaccctgtaaatgctgaaggcgctaaccagggtcatgcaagttcattgagtgctagtaaagtttcccaacttgttgctgctaatcgacataagtcaaagattgtttcaggcgatgatgacttacctcagagagatgatattggggaaagacggagaaaacatgagctccgagtactggcaggagctggaatcaggtccgaggatgatgctggagaaaatgacactatttcagatgatggagacattgagatggaggatagtgaagctggagattcagaagatgacttttacgaacaagcaaaacaaaaccgagctgcaaaactcgctgccaaagctgacatccattctaggtcctcctcagttccatctatgcctgaaactgtggatggcaaacgtcatattacttatcagatggagaagaacagaggacttactcgcgctcgaaagaagctgatcaagaatccaagaaagaaatacaagttgaagcatgagaagaaaatgaagaatcggaaaggacaggtacgggaagtcaagaagcctattggtccatacggtggggagacatctggaatcaatccgagaatcagtcggagcaccagatttaagaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10 Sas10_Utp3

Protein Analysis

637

Amino Acids

72.28

Weight (kDa)

5.1

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43650
fragaria_vesca	FvH4_5g27692 FvH4_5g27692 FvH4_5g27692
malus_domestica	MD04G1048900.v1.1 MD17G1177700.v1.1
prunus_persica	Prupe.1G206800_v2.0.a1
pyrus_communis	pycom04g04300
rosa_chinensis	RchiOBHm_Chr7g0219421
rosa_laevigata	RLG00000002290
rosa_multiflora	Rmu_sc0002460.1_g000021 Rmu_sc0003767.1_g000014
rosa_roxburghii	Rroxscaffold_3G00240050
rosa_rugosa	Rorug07G0184900
rosa_samantha	Rh7AG327800 Rh7BG317800 Rh7CG345200 Rh7DG323200
rosa_wichuraiana	Rw7G027650 Rw7G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1268, 1856
AccII	CGCG	1 cut(s)	1740
AciI	CCGC	3 cut(s)	315, 473, 953
AclI	AACGTT	1 cut(s)	791
AclWI	GGATC	1 cut(s)	1011
AcuI	CTGAAG	5 cut(s)	179, 474, 834, 1115, 1338
AfaI	GTAC	5 cut(s)	22, 643, 843, 1476, 1824
AfiI	CCNNNNNNNGG	5 cut(s)	260, 377, 1268, 1477, 1856
AgsI	TTSAA	8 cut(s)	77, 673, 1037, 1168, 1198, 1216, 1280, 1786
AhlI	ACTAGT	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	391, 1329
Alw21I	GWGCWC	2 cut(s)	1470, 1898
Alw26I	GTCTC	6 cut(s)	382, 612, 1033, 1095, 1536, 1856
AlwI	GGATC	1 cut(s)	1011
AlwNI	CAGNNNCTG	1 cut(s)	1487
Ama87I	CYCGRG	2 cut(s)	609, 917
AoxI	GGCC	1 cut(s)	817
ApeKI	GCWGC	9 cut(s)	269, 286, 757, 980, 1049, 1178, 1379, 1616, 1628
AspLEI	GCGC	3 cut(s)	741, 1325, 1742
AspS9I	GGNCC	3 cut(s)	1497, 1653, 1847
AsuHPI	GGTGA	4 cut(s)	725, 763, 970, 1096
AvaI	CYCGRG	2 cut(s)	609, 917
AvaII	GGWCC	3 cut(s)	1497, 1653, 1847
BanII	GRGCYC	1 cut(s)	1470
BauI	CACGAG	1 cut(s)	510
BbsI	GAAGAC	4 cut(s)	62, 84, 243, 522
Bbv12I	GWGCWC	2 cut(s)	1470, 1898
BbvI	GCAGC	9 cut(s)	256, 298, 769, 967, 1061, 1165, 1366, 1603, 1615
BceAI	ACGGC	1 cut(s)	56
BcgI	CGANNNNNNTGC	6 cut(s)	972, 1006, 1038, 1072, 1490, 1524
BciT130I	CCWGG	2 cut(s)	393, 1331
BciVI	GTATCC	2 cut(s)	988, 1004
BclI	TGATCA	2 cut(s)	832, 1755
BcoDI	GTCTC	6 cut(s)	382, 612, 1033, 1095, 1536, 1856
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	4 cut(s)	24, 620, 1356, 1650
BfoI	RGCGCY	1 cut(s)	1326
BfuI	GTATCC	2 cut(s)	988, 1004
BisI	GCNGC	9 cut(s)	270, 287, 758, 981, 1050, 1179, 1380, 1617, 1629
BlsI	GCNGC	9 cut(s)	271, 288, 759, 982, 1051, 1180, 1381, 1618, 1630
BmcAI	AGTACT	2 cut(s)	22, 1476
Bme1390I	CCNGG	2 cut(s)	393, 1331
Bme18I	GGWCC	3 cut(s)	1497, 1653, 1847
BmeT110I	CYCGRG	2 cut(s)	609, 917
BmgT120I	GGNCC	3 cut(s)	1497, 1653, 1847
BmrFI	CCNGG	2 cut(s)	393, 1331
BmsI	GCATC	2 cut(s)	91, 1498
BoxI	GACNNNNGTC	1 cut(s)	1393
BpiI	GAAGAC	4 cut(s)	62, 84, 243, 522
BpmI	CTGGAG	2 cut(s)	1533, 1590
BpuEI	CTTGAG	3 cut(s)	548, 791, 1205
BsaBI	GATNNNNATC	2 cut(s)	900, 1015
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	1330, 1500
BsaXI	ACNNNNNCTCC	4 cut(s)	379, 409, 1452, 1482
Bsc4I	CCNNNNNNNGG	5 cut(s)	260, 377, 1268, 1477, 1856
Bse1I	ACTGG	3 cut(s)	265, 897, 1482
Bse3DI	GCAATG	1 cut(s)	46
Bse8I	GATNNNNATC	2 cut(s)	900, 1015
BseBI	CCWGG	2 cut(s)	393, 1331
BseDI	CCNNGG	2 cut(s)	1330, 1500
BseJI	GATNNNNATC	2 cut(s)	900, 1015
BseLI	CCNNNNNNNGG	5 cut(s)	260, 377, 1268, 1477, 1856
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	1442, 1674
BseNI	ACTGG	3 cut(s)	265, 897, 1482
BseRI	GAGGAG	2 cut(s)	668, 1648
BseXI	GCAGC	9 cut(s)	256, 298, 769, 967, 1061, 1165, 1366, 1603, 1615
Bsh1236I	CGCG	1 cut(s)	1740
BshFI	GGCC	1 cut(s)	819
BsiHKAI	GWGCWC	2 cut(s)	1470, 1898
BsiHKCI	CYCGRG	2 cut(s)	609, 917
BslI	CCNNNNNNNGG	5 cut(s)	260, 377, 1268, 1477, 1856
BsmAI	GTCTC	6 cut(s)	382, 612, 1033, 1095, 1536, 1856
BsmI	GAATGC	3 cut(s)	679, 741, 982
BsnI	GGCC	1 cut(s)	819
Bso31I	GGTCTC	1 cut(s)	382
BsoBI	CYCGRG	2 cut(s)	609, 917
Bsp1286I	GDGCHC	2 cut(s)	1470, 1898
Bsp143I	GATC	6 cut(s)	190, 832, 861, 913, 1016, 1755
BspACI	CCGC	3 cut(s)	315, 473, 953
BspANI	GGCC	1 cut(s)	819
BspCNI	CTCAG	2 cut(s)	1441, 1673
BspFNI	CGCG	1 cut(s)	1740
BspHI	TCATGA	1 cut(s)	720
BspPI	GGATC	1 cut(s)	1011
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	265, 897, 1482
BssECI	CCNNGG	2 cut(s)	1330, 1500
BssMI	GATC	6 cut(s)	190, 832, 861, 913, 1016, 1755
BssSI	CACGAG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	2 cut(s)	393, 1331
Bst4CI	ACNGT	4 cut(s)	184, 1069, 1684, 1856
Bst6I	CTCTTC	5 cut(s)	213, 219, 225, 351, 450
BstC8I	GCNNGC	2 cut(s)	771, 850
BstDEI	CTNAG	2 cut(s)	1428, 1660
BstFNI	CGCG	1 cut(s)	1740
BstH2I	RGCGCY	1 cut(s)	1326
BstHHI	GCGC	3 cut(s)	741, 1325, 1742
BstKTI	GATC	6 cut(s)	193, 835, 864, 916, 1019, 1758
BstMAI	GTCTC	6 cut(s)	382, 612, 1033, 1095, 1536, 1856
BstMBI	GATC	6 cut(s)	190, 832, 861, 913, 1016, 1755
BstMWI	GCNNNNNNNGC	5 cut(s)	470, 766, 1322, 1625, 1634
BstNI	CCWGG	2 cut(s)	393, 1331
BstPAI	GACNNNNGTC	1 cut(s)	1393
BstSCI	CCNGG	2 cut(s)	391, 1329
BstUI	CGCG	1 cut(s)	1740
BstV1I	GCAGC	9 cut(s)	256, 298, 769, 967, 1061, 1165, 1366, 1603, 1615
BstV2I	GAAGAC	4 cut(s)	62, 84, 243, 522
BstX2I	RGATCY	1 cut(s)	1016
BstYI	RGATCY	1 cut(s)	1016
BsuI	GTATCC	2 cut(s)	988, 1004
BsuRI	GGCC	1 cut(s)	819
BtgZI	GCGATG	2 cut(s)	453, 1428
Cac8I	GCNNGC	2 cut(s)	771, 850
CaiI	CAGNNNCTG	1 cut(s)	1487
CciI	TCATGA	1 cut(s)	720
CfoI	GCGC	3 cut(s)	741, 1325, 1742
Cfr13I	GGNCC	3 cut(s)	1497, 1653, 1847
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	5 cut(s)	21, 642, 842, 1475, 1823
CviQI	GTAC	5 cut(s)	21, 642, 842, 1475, 1823
DdeI	CTNAG	2 cut(s)	1428, 1660
DpnI	GATC	6 cut(s)	192, 834, 863, 915, 1018, 1757
DpnII	GATC	6 cut(s)	190, 832, 861, 913, 1016, 1755
Eam1104I	CTCTTC	5 cut(s)	213, 219, 225, 351, 450
EarI	CTCTTC	5 cut(s)	213, 219, 225, 351, 450
EciI	GGCGGA	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	1468
Eco24I	GRGCYC	1 cut(s)	1470
Eco31I	GGTCTC	1 cut(s)	382
Eco47I	GGWCC	3 cut(s)	1497, 1653, 1847
Eco53kI	GAGCTC	1 cut(s)	1468
Eco57I	CTGAAG	5 cut(s)	179, 474, 834, 1115, 1338
Eco88I	CYCGRG	2 cut(s)	609, 917
EcoICRI	GAGCTC	1 cut(s)	1468
EcoO109I	RGGNCCY	1 cut(s)	1653
EcoRII	CCWGG	2 cut(s)	391, 1329
EcoT38I	GRGCYC	1 cut(s)	1470
FbaI	TGATCA	2 cut(s)	832, 1755
Fnu4HI	GCNGC	9 cut(s)	270, 287, 758, 981, 1050, 1179, 1380, 1617, 1629
FriOI	GRGCYC	1 cut(s)	1470
Fsp4HI	GCNGC	9 cut(s)	270, 287, 758, 981, 1050, 1179, 1380, 1617, 1629
FspBI	CTAG	4 cut(s)	24, 620, 1356, 1650
GlaI	GCGC	3 cut(s)	740, 1324, 1741
GluI	GCNGC	9 cut(s)	270, 287, 758, 981, 1050, 1179, 1380, 1617, 1629
GsuI	CTGGAG	2 cut(s)	1533, 1590
HaeII	RGCGCY	1 cut(s)	1326
HaeIII	GGCC	1 cut(s)	819
HhaI	GCGC	3 cut(s)	741, 1325, 1742
Hin6I	GCGC	3 cut(s)	739, 1323, 1740
HinP1I	GCGC	3 cut(s)	739, 1323, 1740
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	1274
HphI	GGTGA	4 cut(s)	725, 763, 970, 1096
Hpy166II	GTNNAC	3 cut(s)	322, 1124, 1148
Hpy8I	GTNNAC	3 cut(s)	322, 1124, 1148
Hpy99I	CGWCG	2 cut(s)	215, 245
HpyAV	CCTTC	8 cut(s)	378, 702, 722, 809, 809, 1090, 1198, 1313
HpyCH4III	ACNGT	4 cut(s)	184, 1069, 1684, 1856
HpyCH4IV	ACGT	5 cut(s)	150, 791, 1120, 1126, 1696
HpyCH4V	TGCA	4 cut(s)	272, 983, 1340, 1619
HpyF10VI	GCNNNNNNNGC	5 cut(s)	470, 766, 1322, 1625, 1634
HpyF3I	CTNAG	2 cut(s)	1428, 1660
HpySE526I	ACGT	5 cut(s)	150, 791, 1120, 1126, 1696
HspAI	GCGC	3 cut(s)	739, 1323, 1740
Ksp22I	TGATCA	2 cut(s)	832, 1755
Kzo9I	GATC	6 cut(s)	190, 832, 861, 913, 1016, 1755
LmnI	GCTCC	3 cut(s)	1473, 1484, 1893
Lsp1109I	GCAGC	9 cut(s)	256, 298, 769, 967, 1061, 1165, 1366, 1603, 1615
LweI	GCATC	2 cut(s)	91, 1498
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	4 cut(s)	24, 620, 1356, 1650
MaeII	ACGT	5 cut(s)	150, 791, 1120, 1126, 1696
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	6 cut(s)	192, 834, 863, 915, 1018, 1757
MboI	GATC	6 cut(s)	190, 832, 861, 913, 1016, 1755
MflI	RGATCY	1 cut(s)	1016
MhlI	GDGCHC	2 cut(s)	1470, 1898
MluCI	AATT	4 cut(s)	276, 695, 1193, 1216
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	1 cut(s)	1871
MseI	TTAA	5 cut(s)	141, 204, 969, 1265, 1905
MslI	CAYNNNNRTG	2 cut(s)	1160, 1550
MspA1I	CMGCKG	1 cut(s)	1052
MspR9I	CCNGG	2 cut(s)	393, 1331
Mva1269I	GAATGC	3 cut(s)	679, 741, 982
MvaI	CCWGG	2 cut(s)	393, 1331
MvnI	CGCG	1 cut(s)	1740
MwoI	GCNNNNNNNGC	5 cut(s)	470, 766, 1322, 1625, 1634
NdeII	GATC	6 cut(s)	190, 832, 861, 913, 1016, 1755
PaeR7I	CTCGAG	2 cut(s)	609, 917
PagI	TCATGA	1 cut(s)	720
PctI	GAATGC	3 cut(s)	679, 741, 982
PflMI	CCANNNNNTGG	2 cut(s)	1268, 1856
PkrI	GCNGC	9 cut(s)	271, 288, 759, 982, 1051, 1180, 1381, 1618, 1630
PleI	GAGTC	1 cut(s)	440
PpsI	GAGTC	1 cut(s)	440
PpuMI	RGGWCCY	1 cut(s)	1653
PshAI	GACNNNNGTC	1 cut(s)	1393
Psp124BI	GAGCTC	1 cut(s)	1470
Psp1406I	AACGTT	1 cut(s)	791
Psp5II	RGGWCCY	1 cut(s)	1653
Psp6I	CCWGG	2 cut(s)	391, 1329
PspGI	CCWGG	2 cut(s)	391, 1329
PspPI	GGNCC	3 cut(s)	1497, 1653, 1847
PspPPI	RGGWCCY	1 cut(s)	1653
PstNI	CAGNNNCTG	1 cut(s)	1487
PsuI	RGATCY	1 cut(s)	1016
PvuII	CAGCTG	1 cut(s)	1052
RsaI	GTAC	5 cut(s)	22, 643, 843, 1476, 1824
RsaNI	GTAC	5 cut(s)	21, 642, 842, 1475, 1823
RseI	CAYNNNNRTG	2 cut(s)	1160, 1550
SacI	GAGCTC	1 cut(s)	1470
SaqAI	TTAA	5 cut(s)	141, 204, 969, 1265, 1905
SatI	GCNGC	9 cut(s)	270, 287, 758, 981, 1050, 1179, 1380, 1617, 1629
Sau3AI	GATC	6 cut(s)	190, 832, 861, 913, 1016, 1755
Sau96I	GGNCC	3 cut(s)	1497, 1653, 1847
ScaI	AGTACT	2 cut(s)	22, 1476
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	393, 1331
SduI	GDGCHC	2 cut(s)	1470, 1898
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	2 cut(s)	91, 1498
Sfr274I	CTCGAG	2 cut(s)	609, 917
SinI	GGWCC	3 cut(s)	1497, 1653, 1847
SlaI	CTCGAG	2 cut(s)	609, 917
SmiMI	CAYNNNNRTG	2 cut(s)	1160, 1550
SmlI	CTYRAG	5 cut(s)	527, 609, 806, 917, 1184
SmoI	CTYRAG	5 cut(s)	527, 609, 806, 917, 1184
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	4 cut(s)	276, 695, 1193, 1216
SsiI	CCGC	3 cut(s)	315, 473, 953
SspMI	CTAG	4 cut(s)	24, 620, 1356, 1650
SstI	GAGCTC	1 cut(s)	1470
StyD4I	CCNGG	2 cut(s)	391, 1329
TaaI	ACNGT	4 cut(s)	184, 1069, 1684, 1856
TaiI	ACGT	5 cut(s)	153, 794, 1123, 1129, 1699
TaqI	TCGA	8 cut(s)	99, 135, 189, 563, 610, 918, 1387, 1744
TasI	AATT	4 cut(s)	276, 695, 1193, 1216
TatI	WGTACW	3 cut(s)	20, 841, 1474
Tru1I	TTAA	5 cut(s)	141, 204, 969, 1265, 1905
Tru9I	TTAA	5 cut(s)	141, 204, 969, 1265, 1905
TseI	GCWGC	9 cut(s)	269, 286, 757, 980, 1049, 1178, 1379, 1616, 1628
TspGWI	ACGGA	1 cut(s)	1468
Van91I	CCANNNNNTGG	2 cut(s)	1268, 1856
VpaK11BI	GGWCC	3 cut(s)	1497, 1653, 1847
XhoI	CTCGAG	2 cut(s)	609, 917
XspI	CTAG	4 cut(s)	24, 620, 1356, 1650
ZrmI	AGTACT	2 cut(s)	22, 1476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.