Rroxscaffold_3G00240050

Something about silencing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
31500206 .. 31506724
6519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240050.1

Sequence Viewer

Length: 2004 bp
ATGGGTAAGAGAGGAAAGAGTAGTCAGAGAAAAGGCAATGAAAACCCTACTAAGACAAAGTTCCATGCCGTTGAAGACGACATGGATGATGAAGTCGATGCCTTTATGAAACAAAGAGATATTGTTCCCCTCGACCTTAATCAAGACGTTACAGATTCCGATGAAGATAACGAGCAAACAGTTTTCGATCTTCAGAATGTTAATGATGACGACGAGGAAGAGGAAGACGACGATGATATCCCCGATTCTGGAATGGCTGCAAAAATTGTTAGGCAGCAGAAGTTTATGAGGGCGAAGTTTGGCGGAGTTGAGGATGAAATGCTTGATGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAAAGCCGATATGGGGTGGAAGAAGACCTGGCTATCATGGTGGCGATAATCGTGATTTTGAGGAAAAATCAAGTGATGATGACTCTGCTGAAGAGGAAGCGAGAGAAGCGGAGAGGATTCGGAGAGAAAAGGCAAAGTCATCAACACGAGAAGACTTTGGGCTTGAGGATGATAGTGAAGATGAGAGTAATAGGGAATCGACTTTTGAGGAAATGTCAGTTCATGGAAAAAGTGAAAAAAAATCTCGAGTGATACTAGAAGTAGCAGATGACATGGGTACAGCTTATGAGGAGGTCAAGAAAGATTTGAATGCTTTGTCAAAGGAGGAACAATTATCTGTTTTAAACAATACTGCACCAGAGCTGGTTGGTTTGCTGGCAGAGCTGAATGATGCACTTGAAGAGCTTGAAAACAGAGTTGATCCAATTTTAATCAAGGTTAGAAGGGGTGAGGTCATGTTGGAAGGAGGAATGCGCTATTTAGAGGTGAAGCAGCTTCTTCTGCTGGCGTATTCCCAAGCAATAACGTTCTACCTTCTTCTCAAGTCTGAAGGCCAACAAGTTCGTGATCATCCTGTACTTGCTCGCCTTGTAGAGATCAAGAGTTTATTGGATAAGACGAAGCAACTGGATGAGAATCTTCCATCTGATCTCGAGGAAATCATAAACAAATATAATGGGATGGAAGCAGTGATGAAATCGGTTAAAGTGAATGCTGCAAAAGCATCGGATACTTTTGCTAAAGGATACAGATCCCAACTTGTCTCACTTGAACCAAAAGAAGCAGCTGTGTCGCATGACACAGTCCAGTTGGAAAAGGTGAAGTCTCTGAAGGATGATGAAAGAATGGGAAAACGTAAACGTCAGAGTGATGAAGTTGGTCCACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAATTGAAGCAGAAGGGTGTTTTCAATTCCATCACTCCAAGAACTGATAGACCCCAGAAACATCTGAAGCCATTAAATGGGAAGCTTGAATCGTATGATGATTTTGATGATGATCCTGTAAATGCTGAAGGCGCTAACCAGGGTCATGCAAGTTCATTGAGTGCTAGTAAAGTTTCCCAACTTGTTGCTGCTAATCGACATAAGTCAAAGATTATTTCAGGCGATGATGACTTACCTCAGAGAGATGATATTGGGGAAAGACGGAGAAAACATGAGCTCCGAGTACTGGCAGGAGCTGGAATCAAGTCCGAGGATGATGCTGGAGAAAATGACACTATTTCAGATGATGGAGACATTGAGATGGAGGATAGTGAAGCTGGAGATTCAGAAGATGACTTTTATGAACAAGCAAAACAAAACCGAGCTGCAAAACTCGCTGCCAAAGCTGACATCCATTCTAGGTCCTCCTCAGTTCCATCTTTGCCTGAAACTGTGGATGGCAAACGTCATATTACTTATCAGATGGAGAAGAACAGAGGACTTACTCGCGCTCGAAAGAAGCTGATCAAGAATCCAAGAAAGAAATACAAGTTGAAGCATGAGAAGAAAATGAAGAATCGGAAGGGACAGGTACGGGAAGTCAAGAAGCCTATTGGTCCATATGGTGGGGAGACATCTGGAATCAATCCGAGAATTAGTCGGAGCACCAGATTTAAGAACTAA

Protein Analysis

667

Amino Acids

75.47

Weight (kDa)

5.05

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 244 - 324 4.8e-19 Sas10/Utp3/C1D family
Sas10 PF09368 593 - 665 2.7e-26 Sas10 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1358, 1946
AccII CGCG 1 cut(s) 1830
AciI CCGC 2 cut(s) 303, 464
AclI AACGTT 1 cut(s) 881
AclWI GGATC 3 cut(s) 770, 1101, 1388
AcuI CTGAAG 6 cut(s) 176, 465, 924, 1205, 1367, 1428
AfaI GTAC 4 cut(s) 634, 933, 1566, 1914
AfiI CCNNNNNNNGG 5 cut(s) 248, 368, 1358, 1567, 1946
AjnI CCWGG 2 cut(s) 382, 1419
Alw21I GWGCWC 2 cut(s) 1560, 1988
Alw26I GTCTC 4 cut(s) 1123, 1185, 1626, 1946
AlwI GGATC 3 cut(s) 770, 1101, 1388
AlwNI CAGNNNCTG 1 cut(s) 1577
Ama87I CYCGRG 2 cut(s) 600, 1007
AoxI GGCC 1 cut(s) 907
ApeKI GCWGC 9 cut(s) 257, 274, 847, 1070, 1139, 1268, 1469, 1706, 1718
AspLEI GCGC 3 cut(s) 831, 1415, 1832
AspS9I GGNCC 3 cut(s) 1235, 1743, 1937
AsuHPI GGTGA 3 cut(s) 815, 853, 1186
AvaI CYCGRG 2 cut(s) 600, 1007
AvaII GGWCC 3 cut(s) 1235, 1743, 1937
BanII GRGCYC 1 cut(s) 1560
BauI CACGAG 1 cut(s) 501
BbsI GAAGAC 4 cut(s) 81, 231, 385, 513
Bbv12I GWGCWC 2 cut(s) 1560, 1988
BbvI GCAGC 9 cut(s) 244, 286, 859, 1057, 1151, 1255, 1456, 1693, 1705
BccI CCATC 8 cut(s) 1006, 1030, 1319, 1622, 1636, 1765, 1772, 1798
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 6 cut(s) 1062, 1096, 1128, 1162, 1580, 1614
BciT130I CCWGG 2 cut(s) 384, 1421
BciVI GTATCC 2 cut(s) 1078, 1094
BclI TGATCA 2 cut(s) 922, 1845
BcoDI GTCTC 4 cut(s) 1123, 1185, 1626, 1946
BfaI CTAG 3 cut(s) 611, 1446, 1740
BfoI RGCGCY 1 cut(s) 1416
BfuI GTATCC 2 cut(s) 1078, 1094
BisI GCNGC 9 cut(s) 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719
BlsI GCNGC 9 cut(s) 259, 276, 849, 1072, 1141, 1270, 1471, 1708, 1720
BmcAI AGTACT 1 cut(s) 1566
Bme1390I CCNGG 2 cut(s) 384, 1421
Bme18I GGWCC 3 cut(s) 1235, 1743, 1937
BmeT110I CYCGRG 2 cut(s) 600, 1007
BmgT120I GGNCC 3 cut(s) 1235, 1743, 1937
BmrFI CCNGG 2 cut(s) 384, 1421
BmsI GCATC 4 cut(s) 88, 736, 1088, 1588
BoxI GACNNNNGTC 1 cut(s) 1483
BpiI GAAGAC 4 cut(s) 81, 231, 385, 513
BpmI CTGGAG 2 cut(s) 1623, 1680
BpuEI CTTGAG 3 cut(s) 539, 881, 1295
BsaBI GATNNNNATC 3 cut(s) 990, 1105, 1392
BsaJI CCNNGG 2 cut(s) 1420, 1590
BsaXI ACNNNNNCTCC 2 cut(s) 1542, 1572
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 368, 1358, 1567, 1946
Bse1I ACTGG 3 cut(s) 987, 1162, 1572
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 3 cut(s) 990, 1105, 1392
BseBI CCWGG 2 cut(s) 384, 1421
BseDI CCNNGG 2 cut(s) 1420, 1590
BseJI GATNNNNATC 3 cut(s) 990, 1105, 1392
BseLI CCNNNNNNNGG 5 cut(s) 248, 368, 1358, 1567, 1946
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 1532, 1764
BseNI ACTGG 3 cut(s) 987, 1162, 1572
BseRI GAGGAG 2 cut(s) 659, 1738
BseXI GCAGC 9 cut(s) 244, 286, 859, 1057, 1151, 1255, 1456, 1693, 1705
BsgI GTGCAG 1 cut(s) 693
Bsh1236I CGCG 1 cut(s) 1830
BshFI GGCC 1 cut(s) 909
BsiHKAI GWGCWC 2 cut(s) 1560, 1988
BsiHKCI CYCGRG 2 cut(s) 600, 1007
BslFI GGGAC 1 cut(s) 1920
BslI CCNNNNNNNGG 5 cut(s) 248, 368, 1358, 1567, 1946
BsmAI GTCTC 4 cut(s) 1123, 1185, 1626, 1946
BsmFI GGGAC 1 cut(s) 1920
BsmI GAATGC 3 cut(s) 670, 831, 1072
BsnI GGCC 1 cut(s) 909
BsoBI CYCGRG 2 cut(s) 600, 1007
Bsp1286I GDGCHC 2 cut(s) 1560, 1988
Bsp143I GATC 8 cut(s) 187, 775, 922, 951, 1003, 1106, 1393, 1845
BspACI CCGC 2 cut(s) 303, 464
BspANI GGCC 1 cut(s) 909
BspCNI CTCAG 2 cut(s) 1531, 1763
BspFNI CGCG 1 cut(s) 1830
BspPI GGATC 3 cut(s) 770, 1101, 1388
BspQI GCTCTTC 1 cut(s) 750
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 3 cut(s) 987, 1162, 1572
BssECI CCNNGG 2 cut(s) 1420, 1590
BssMI GATC 8 cut(s) 187, 775, 922, 951, 1003, 1106, 1393, 1845
BssSI CACGAG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 2 cut(s) 384, 1421
Bst4CI ACNGT 3 cut(s) 181, 1159, 1774
Bst6I CTCTTC 4 cut(s) 213, 342, 441, 750
BstC8I GCNNGC 3 cut(s) 732, 861, 940
BstDEI CTNAG 3 cut(s) 51, 1518, 1750
BstFNI CGCG 1 cut(s) 1830
BstH2I RGCGCY 1 cut(s) 1416
BstHHI GCGC 3 cut(s) 831, 1415, 1832
BstKTI GATC 8 cut(s) 190, 778, 925, 954, 1006, 1109, 1396, 1848
BstMAI GTCTC 4 cut(s) 1123, 1185, 1626, 1946
BstMBI GATC 8 cut(s) 187, 775, 922, 951, 1003, 1106, 1393, 1845
BstMWI GCNNNNNNNGC 7 cut(s) 461, 736, 856, 1076, 1412, 1715, 1724
BstNI CCWGG 2 cut(s) 384, 1421
BstPAI GACNNNNGTC 1 cut(s) 1483
BstSCI CCNGG 2 cut(s) 382, 1419
BstUI CGCG 1 cut(s) 1830
BstV1I GCAGC 9 cut(s) 244, 286, 859, 1057, 1151, 1255, 1456, 1693, 1705
BstV2I GAAGAC 4 cut(s) 81, 231, 385, 513
BstX2I RGATCY 1 cut(s) 1106
BstYI RGATCY 1 cut(s) 1106
BsuI GTATCC 2 cut(s) 1078, 1094
BsuRI GGCC 1 cut(s) 909
BtgZI GCGATG 1 cut(s) 1518
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 1 cut(s) 1050
Cac8I GCNNGC 3 cut(s) 732, 861, 940
CaiI CAGNNNCTG 1 cut(s) 1577
CfoI GCGC 3 cut(s) 831, 1415, 1832
Cfr13I GGNCC 3 cut(s) 1235, 1743, 1937
Csp6I GTAC 4 cut(s) 633, 932, 1565, 1913
CviQI GTAC 4 cut(s) 633, 932, 1565, 1913
DdeI CTNAG 3 cut(s) 51, 1518, 1750
DpnI GATC 8 cut(s) 189, 777, 924, 953, 1005, 1108, 1395, 1847
DpnII GATC 8 cut(s) 187, 775, 922, 951, 1003, 1106, 1393, 1845
DraI TTTAAA 1 cut(s) 699
Eam1104I CTCTTC 4 cut(s) 213, 342, 441, 750
EarI CTCTTC 4 cut(s) 213, 342, 441, 750
EciI GGCGGA 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 1558
Eco24I GRGCYC 1 cut(s) 1560
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 3 cut(s) 1235, 1743, 1937
Eco53kI GAGCTC 1 cut(s) 1558
Eco57I CTGAAG 6 cut(s) 176, 465, 924, 1205, 1367, 1428
Eco88I CYCGRG 2 cut(s) 600, 1007
EcoICRI GAGCTC 1 cut(s) 1558
EcoO109I RGGNCCY 1 cut(s) 1743
EcoRII CCWGG 2 cut(s) 382, 1419
EcoRV GATATC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 1560
FaqI GGGAC 1 cut(s) 1920
FauNDI CATATG 1 cut(s) 1942
FbaI TGATCA 2 cut(s) 922, 1845
Fnu4HI GCNGC 9 cut(s) 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719
FriOI GRGCYC 1 cut(s) 1560
Fsp4HI GCNGC 9 cut(s) 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719
FspBI CTAG 3 cut(s) 611, 1446, 1740
GlaI GCGC 3 cut(s) 830, 1414, 1831
GluI GCNGC 9 cut(s) 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719
GsuI CTGGAG 2 cut(s) 1623, 1680
HaeII RGCGCY 1 cut(s) 1416
HaeIII GGCC 1 cut(s) 909
HhaI GCGC 3 cut(s) 831, 1415, 1832
Hin6I GCGC 3 cut(s) 829, 1413, 1830
HinP1I GCGC 3 cut(s) 829, 1413, 1830
HindIII AAGCTT 1 cut(s) 1364
HphI GGTGA 3 cut(s) 815, 853, 1186
Hpy166II GTNNAC 2 cut(s) 1214, 1238
Hpy8I GTNNAC 2 cut(s) 1214, 1238
Hpy99I CGWCG 2 cut(s) 215, 233
HpyAV CCTTC 8 cut(s) 792, 812, 899, 899, 1180, 1288, 1403, 1897
HpyCH4III ACNGT 3 cut(s) 181, 1159, 1774
HpyCH4IV ACGT 5 cut(s) 147, 881, 1210, 1216, 1786
HpyCH4V TGCA 6 cut(s) 260, 710, 749, 1073, 1430, 1709
HpyF10VI GCNNNNNNNGC 7 cut(s) 461, 736, 856, 1076, 1412, 1715, 1724
HpyF3I CTNAG 3 cut(s) 51, 1518, 1750
HpySE526I ACGT 5 cut(s) 147, 881, 1210, 1216, 1786
HspAI GCGC 3 cut(s) 829, 1413, 1830
Ksp22I TGATCA 2 cut(s) 922, 1845
Kzo9I GATC 8 cut(s) 187, 775, 922, 951, 1003, 1106, 1393, 1845
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 3 cut(s) 1563, 1574, 1983
Lsp1109I GCAGC 9 cut(s) 244, 286, 859, 1057, 1151, 1255, 1456, 1693, 1705
LweI GCATC 4 cut(s) 88, 736, 1088, 1588
MaeI CTAG 3 cut(s) 611, 1446, 1740
MaeII ACGT 5 cut(s) 147, 881, 1210, 1216, 1786
MaeIII GTNAC 1 cut(s) 148
MalI GATC 8 cut(s) 189, 777, 924, 953, 1005, 1108, 1395, 1847
MboI GATC 8 cut(s) 187, 775, 922, 951, 1003, 1106, 1393, 1845
MflI RGATCY 1 cut(s) 1106
MhlI GDGCHC 2 cut(s) 1560, 1988
MluCI AATT 6 cut(s) 264, 686, 780, 1283, 1306, 1974
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 3 cut(s) 795, 1146, 1961
MseI TTAA 7 cut(s) 138, 201, 698, 785, 1059, 1355, 1995
MslI CAYNNNNRTG 2 cut(s) 1250, 1640
MspA1I CMGCKG 1 cut(s) 1142
MspR9I CCNGG 2 cut(s) 384, 1421
Mva1269I GAATGC 3 cut(s) 670, 831, 1072
MvaI CCWGG 2 cut(s) 384, 1421
MvnI CGCG 1 cut(s) 1830
MwoI GCNNNNNNNGC 7 cut(s) 461, 736, 856, 1076, 1412, 1715, 1724
NdeI CATATG 1 cut(s) 1942
NdeII GATC 8 cut(s) 187, 775, 922, 951, 1003, 1106, 1393, 1845
PaeR7I CTCGAG 2 cut(s) 600, 1007
PciSI GCTCTTC 1 cut(s) 750
PctI GAATGC 3 cut(s) 670, 831, 1072
PflFI GACNNNGTC 1 cut(s) 1157
PflMI CCANNNNNTGG 2 cut(s) 1358, 1946
PkrI GCNGC 9 cut(s) 259, 276, 849, 1072, 1141, 1270, 1471, 1708, 1720
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 1743
PshAI GACNNNNGTC 1 cut(s) 1483
Psp124BI GAGCTC 1 cut(s) 1560
Psp1406I AACGTT 1 cut(s) 881
Psp5II RGGWCCY 1 cut(s) 1743
Psp6I CCWGG 2 cut(s) 382, 1419
PspGI CCWGG 2 cut(s) 382, 1419
PspPI GGNCC 3 cut(s) 1235, 1743, 1937
PspPPI RGGWCCY 1 cut(s) 1743
PstNI CAGNNNCTG 1 cut(s) 1577
PsuI RGATCY 1 cut(s) 1106
PsyI GACNNNGTC 1 cut(s) 1157
PvuII CAGCTG 1 cut(s) 1142
RsaI GTAC 4 cut(s) 634, 933, 1566, 1914
RsaNI GTAC 4 cut(s) 633, 932, 1565, 1913
RseI CAYNNNNRTG 2 cut(s) 1250, 1640
SacI GAGCTC 1 cut(s) 1560
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 7 cut(s) 138, 201, 698, 785, 1059, 1355, 1995
SatI GCNGC 9 cut(s) 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719
Sau3AI GATC 8 cut(s) 187, 775, 922, 951, 1003, 1106, 1393, 1845
Sau96I GGNCC 3 cut(s) 1235, 1743, 1937
ScaI AGTACT 1 cut(s) 1566
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 2 cut(s) 384, 1421
SduI GDGCHC 2 cut(s) 1560, 1988
SfaNI GCATC 4 cut(s) 88, 736, 1088, 1588
Sfr274I CTCGAG 2 cut(s) 600, 1007
SinI GGWCC 3 cut(s) 1235, 1743, 1937
SlaI CTCGAG 2 cut(s) 600, 1007
SmiMI CAYNNNNRTG 2 cut(s) 1250, 1640
SmlI CTYRAG 5 cut(s) 518, 600, 896, 1007, 1274
SmoI CTYRAG 5 cut(s) 518, 600, 896, 1007, 1274
Sse9I AATT 6 cut(s) 264, 686, 780, 1283, 1306, 1974
SsiI CCGC 2 cut(s) 303, 464
SspMI CTAG 3 cut(s) 611, 1446, 1740
SstI GAGCTC 1 cut(s) 1560
StyD4I CCNGG 2 cut(s) 382, 1419
TaaI ACNGT 3 cut(s) 181, 1159, 1774
TaiI ACGT 5 cut(s) 150, 884, 1213, 1219, 1789
TaqI TCGA 8 cut(s) 96, 132, 186, 554, 601, 1008, 1477, 1834
TasI AATT 6 cut(s) 264, 686, 780, 1283, 1306, 1974
TatI WGTACW 2 cut(s) 931, 1564
Tru1I TTAA 7 cut(s) 138, 201, 698, 785, 1059, 1355, 1995
Tru9I TTAA 7 cut(s) 138, 201, 698, 785, 1059, 1355, 1995
TscAI CASTG 1 cut(s) 1050
TseI GCWGC 9 cut(s) 257, 274, 847, 1070, 1139, 1268, 1469, 1706, 1718
TspGWI ACGGA 1 cut(s) 1558
TspRI CASTG 1 cut(s) 1050
Tth111I GACNNNGTC 1 cut(s) 1157
Van91I CCANNNNNTGG 2 cut(s) 1358, 1946
VpaK11BI GGWCC 3 cut(s) 1235, 1743, 1937
XhoI CTCGAG 2 cut(s) 600, 1007
XspI CTAG 3 cut(s) 611, 1446, 1740
ZrmI AGTACT 1 cut(s) 1566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.