Something about silencing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43650 |
| fragaria_vesca | FvH4_5g27692 FvH4_5g27692 FvH4_5g27692 |
| malus_domestica | MD04G1048900.v1.1 MD17G1177700.v1.1 |
| prunus_persica | Prupe.1G206800_v2.0.a1 |
| pyrus_communis | pycom04g04300 |
| rosa_chinensis | RchiOBHm_Chr7g0219421 |
| rosa_laevigata | RLG00000002290 |
| rosa_multiflora | Rmu_sc0002460.1_g000021 Rmu_sc0003767.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00240050 |
| rosa_rugosa | Rorug07G0184900 |
| rosa_samantha | Rh7AG327800 Rh7BG317800 Rh7CG345200 Rh7DG323200 |
| rosa_wichuraiana | Rw7G027650 Rw7G027690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1358, 1946 |
| AccII | CGCG | 1 cut(s) | 1830 |
| AciI | CCGC | 2 cut(s) | 303, 464 |
| AclI | AACGTT | 1 cut(s) | 881 |
| AclWI | GGATC | 3 cut(s) | 770, 1101, 1388 |
| AcuI | CTGAAG | 6 cut(s) | 176, 465, 924, 1205, 1367, 1428 |
| AfaI | GTAC | 4 cut(s) | 634, 933, 1566, 1914 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 248, 368, 1358, 1567, 1946 |
| AjnI | CCWGG | 2 cut(s) | 382, 1419 |
| Alw21I | GWGCWC | 2 cut(s) | 1560, 1988 |
| Alw26I | GTCTC | 4 cut(s) | 1123, 1185, 1626, 1946 |
| AlwI | GGATC | 3 cut(s) | 770, 1101, 1388 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1577 |
| Ama87I | CYCGRG | 2 cut(s) | 600, 1007 |
| AoxI | GGCC | 1 cut(s) | 907 |
| ApeKI | GCWGC | 9 cut(s) | 257, 274, 847, 1070, 1139, 1268, 1469, 1706, 1718 |
| AspLEI | GCGC | 3 cut(s) | 831, 1415, 1832 |
| AspS9I | GGNCC | 3 cut(s) | 1235, 1743, 1937 |
| AsuHPI | GGTGA | 3 cut(s) | 815, 853, 1186 |
| AvaI | CYCGRG | 2 cut(s) | 600, 1007 |
| AvaII | GGWCC | 3 cut(s) | 1235, 1743, 1937 |
| BanII | GRGCYC | 1 cut(s) | 1560 |
| BauI | CACGAG | 1 cut(s) | 501 |
| BbsI | GAAGAC | 4 cut(s) | 81, 231, 385, 513 |
| Bbv12I | GWGCWC | 2 cut(s) | 1560, 1988 |
| BbvI | GCAGC | 9 cut(s) | 244, 286, 859, 1057, 1151, 1255, 1456, 1693, 1705 |
| BccI | CCATC | 8 cut(s) | 1006, 1030, 1319, 1622, 1636, 1765, 1772, 1798 |
| BceAI | ACGGC | 1 cut(s) | 53 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1062, 1096, 1128, 1162, 1580, 1614 |
| BciT130I | CCWGG | 2 cut(s) | 384, 1421 |
| BciVI | GTATCC | 2 cut(s) | 1078, 1094 |
| BclI | TGATCA | 2 cut(s) | 922, 1845 |
| BcoDI | GTCTC | 4 cut(s) | 1123, 1185, 1626, 1946 |
| BfaI | CTAG | 3 cut(s) | 611, 1446, 1740 |
| BfoI | RGCGCY | 1 cut(s) | 1416 |
| BfuI | GTATCC | 2 cut(s) | 1078, 1094 |
| BisI | GCNGC | 9 cut(s) | 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719 |
| BlsI | GCNGC | 9 cut(s) | 259, 276, 849, 1072, 1141, 1270, 1471, 1708, 1720 |
| BmcAI | AGTACT | 1 cut(s) | 1566 |
| Bme1390I | CCNGG | 2 cut(s) | 384, 1421 |
| Bme18I | GGWCC | 3 cut(s) | 1235, 1743, 1937 |
| BmeT110I | CYCGRG | 2 cut(s) | 600, 1007 |
| BmgT120I | GGNCC | 3 cut(s) | 1235, 1743, 1937 |
| BmrFI | CCNGG | 2 cut(s) | 384, 1421 |
| BmsI | GCATC | 4 cut(s) | 88, 736, 1088, 1588 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1483 |
| BpiI | GAAGAC | 4 cut(s) | 81, 231, 385, 513 |
| BpmI | CTGGAG | 2 cut(s) | 1623, 1680 |
| BpuEI | CTTGAG | 3 cut(s) | 539, 881, 1295 |
| BsaBI | GATNNNNATC | 3 cut(s) | 990, 1105, 1392 |
| BsaJI | CCNNGG | 2 cut(s) | 1420, 1590 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1542, 1572 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 248, 368, 1358, 1567, 1946 |
| Bse1I | ACTGG | 3 cut(s) | 987, 1162, 1572 |
| Bse3DI | GCAATG | 1 cut(s) | 43 |
| Bse8I | GATNNNNATC | 3 cut(s) | 990, 1105, 1392 |
| BseBI | CCWGG | 2 cut(s) | 384, 1421 |
| BseDI | CCNNGG | 2 cut(s) | 1420, 1590 |
| BseJI | GATNNNNATC | 3 cut(s) | 990, 1105, 1392 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 248, 368, 1358, 1567, 1946 |
| BseMI | GCAATG | 1 cut(s) | 43 |
| BseMII | CTCAG | 2 cut(s) | 1532, 1764 |
| BseNI | ACTGG | 3 cut(s) | 987, 1162, 1572 |
| BseRI | GAGGAG | 2 cut(s) | 659, 1738 |
| BseXI | GCAGC | 9 cut(s) | 244, 286, 859, 1057, 1151, 1255, 1456, 1693, 1705 |
| BsgI | GTGCAG | 1 cut(s) | 693 |
| Bsh1236I | CGCG | 1 cut(s) | 1830 |
| BshFI | GGCC | 1 cut(s) | 909 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1560, 1988 |
| BsiHKCI | CYCGRG | 2 cut(s) | 600, 1007 |
| BslFI | GGGAC | 1 cut(s) | 1920 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 248, 368, 1358, 1567, 1946 |
| BsmAI | GTCTC | 4 cut(s) | 1123, 1185, 1626, 1946 |
| BsmFI | GGGAC | 1 cut(s) | 1920 |
| BsmI | GAATGC | 3 cut(s) | 670, 831, 1072 |
| BsnI | GGCC | 1 cut(s) | 909 |
| BsoBI | CYCGRG | 2 cut(s) | 600, 1007 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1560, 1988 |
| Bsp143I | GATC | 8 cut(s) | 187, 775, 922, 951, 1003, 1106, 1393, 1845 |
| BspACI | CCGC | 2 cut(s) | 303, 464 |
| BspANI | GGCC | 1 cut(s) | 909 |
| BspCNI | CTCAG | 2 cut(s) | 1531, 1763 |
| BspFNI | CGCG | 1 cut(s) | 1830 |
| BspPI | GGATC | 3 cut(s) | 770, 1101, 1388 |
| BspQI | GCTCTTC | 1 cut(s) | 750 |
| BsrDI | GCAATG | 1 cut(s) | 43 |
| BsrI | ACTGG | 3 cut(s) | 987, 1162, 1572 |
| BssECI | CCNNGG | 2 cut(s) | 1420, 1590 |
| BssMI | GATC | 8 cut(s) | 187, 775, 922, 951, 1003, 1106, 1393, 1845 |
| BssSI | CACGAG | 1 cut(s) | 501 |
| Bst2BI | CACGAG | 1 cut(s) | 501 |
| Bst2UI | CCWGG | 2 cut(s) | 384, 1421 |
| Bst4CI | ACNGT | 3 cut(s) | 181, 1159, 1774 |
| Bst6I | CTCTTC | 4 cut(s) | 213, 342, 441, 750 |
| BstC8I | GCNNGC | 3 cut(s) | 732, 861, 940 |
| BstDEI | CTNAG | 3 cut(s) | 51, 1518, 1750 |
| BstFNI | CGCG | 1 cut(s) | 1830 |
| BstH2I | RGCGCY | 1 cut(s) | 1416 |
| BstHHI | GCGC | 3 cut(s) | 831, 1415, 1832 |
| BstKTI | GATC | 8 cut(s) | 190, 778, 925, 954, 1006, 1109, 1396, 1848 |
| BstMAI | GTCTC | 4 cut(s) | 1123, 1185, 1626, 1946 |
| BstMBI | GATC | 8 cut(s) | 187, 775, 922, 951, 1003, 1106, 1393, 1845 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 461, 736, 856, 1076, 1412, 1715, 1724 |
| BstNI | CCWGG | 2 cut(s) | 384, 1421 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1483 |
| BstSCI | CCNGG | 2 cut(s) | 382, 1419 |
| BstUI | CGCG | 1 cut(s) | 1830 |
| BstV1I | GCAGC | 9 cut(s) | 244, 286, 859, 1057, 1151, 1255, 1456, 1693, 1705 |
| BstV2I | GAAGAC | 4 cut(s) | 81, 231, 385, 513 |
| BstX2I | RGATCY | 1 cut(s) | 1106 |
| BstYI | RGATCY | 1 cut(s) | 1106 |
| BsuI | GTATCC | 2 cut(s) | 1078, 1094 |
| BsuRI | GGCC | 1 cut(s) | 909 |
| BtgZI | GCGATG | 1 cut(s) | 1518 |
| BtsI | GCAGTG | 1 cut(s) | 1050 |
| BtsIMutI | CAGTG | 1 cut(s) | 1050 |
| Cac8I | GCNNGC | 3 cut(s) | 732, 861, 940 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1577 |
| CfoI | GCGC | 3 cut(s) | 831, 1415, 1832 |
| Cfr13I | GGNCC | 3 cut(s) | 1235, 1743, 1937 |
| Csp6I | GTAC | 4 cut(s) | 633, 932, 1565, 1913 |
| CviQI | GTAC | 4 cut(s) | 633, 932, 1565, 1913 |
| DdeI | CTNAG | 3 cut(s) | 51, 1518, 1750 |
| DpnI | GATC | 8 cut(s) | 189, 777, 924, 953, 1005, 1108, 1395, 1847 |
| DpnII | GATC | 8 cut(s) | 187, 775, 922, 951, 1003, 1106, 1393, 1845 |
| DraI | TTTAAA | 1 cut(s) | 699 |
| Eam1104I | CTCTTC | 4 cut(s) | 213, 342, 441, 750 |
| EarI | CTCTTC | 4 cut(s) | 213, 342, 441, 750 |
| EciI | GGCGGA | 1 cut(s) | 318 |
| Ecl136II | GAGCTC | 1 cut(s) | 1558 |
| Eco24I | GRGCYC | 1 cut(s) | 1560 |
| Eco32I | GATATC | 1 cut(s) | 238 |
| Eco47I | GGWCC | 3 cut(s) | 1235, 1743, 1937 |
| Eco53kI | GAGCTC | 1 cut(s) | 1558 |
| Eco57I | CTGAAG | 6 cut(s) | 176, 465, 924, 1205, 1367, 1428 |
| Eco88I | CYCGRG | 2 cut(s) | 600, 1007 |
| EcoICRI | GAGCTC | 1 cut(s) | 1558 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1743 |
| EcoRII | CCWGG | 2 cut(s) | 382, 1419 |
| EcoRV | GATATC | 1 cut(s) | 238 |
| EcoT38I | GRGCYC | 1 cut(s) | 1560 |
| FaqI | GGGAC | 1 cut(s) | 1920 |
| FauNDI | CATATG | 1 cut(s) | 1942 |
| FbaI | TGATCA | 2 cut(s) | 922, 1845 |
| Fnu4HI | GCNGC | 9 cut(s) | 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719 |
| FriOI | GRGCYC | 1 cut(s) | 1560 |
| Fsp4HI | GCNGC | 9 cut(s) | 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719 |
| FspBI | CTAG | 3 cut(s) | 611, 1446, 1740 |
| GlaI | GCGC | 3 cut(s) | 830, 1414, 1831 |
| GluI | GCNGC | 9 cut(s) | 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719 |
| GsuI | CTGGAG | 2 cut(s) | 1623, 1680 |
| HaeII | RGCGCY | 1 cut(s) | 1416 |
| HaeIII | GGCC | 1 cut(s) | 909 |
| HhaI | GCGC | 3 cut(s) | 831, 1415, 1832 |
| Hin6I | GCGC | 3 cut(s) | 829, 1413, 1830 |
| HinP1I | GCGC | 3 cut(s) | 829, 1413, 1830 |
| HindIII | AAGCTT | 1 cut(s) | 1364 |
| HphI | GGTGA | 3 cut(s) | 815, 853, 1186 |
| Hpy166II | GTNNAC | 2 cut(s) | 1214, 1238 |
| Hpy8I | GTNNAC | 2 cut(s) | 1214, 1238 |
| Hpy99I | CGWCG | 2 cut(s) | 215, 233 |
| HpyAV | CCTTC | 8 cut(s) | 792, 812, 899, 899, 1180, 1288, 1403, 1897 |
| HpyCH4III | ACNGT | 3 cut(s) | 181, 1159, 1774 |
| HpyCH4IV | ACGT | 5 cut(s) | 147, 881, 1210, 1216, 1786 |
| HpyCH4V | TGCA | 6 cut(s) | 260, 710, 749, 1073, 1430, 1709 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 461, 736, 856, 1076, 1412, 1715, 1724 |
| HpyF3I | CTNAG | 3 cut(s) | 51, 1518, 1750 |
| HpySE526I | ACGT | 5 cut(s) | 147, 881, 1210, 1216, 1786 |
| HspAI | GCGC | 3 cut(s) | 829, 1413, 1830 |
| Ksp22I | TGATCA | 2 cut(s) | 922, 1845 |
| Kzo9I | GATC | 8 cut(s) | 187, 775, 922, 951, 1003, 1106, 1393, 1845 |
| LguI | GCTCTTC | 1 cut(s) | 750 |
| LmnI | GCTCC | 3 cut(s) | 1563, 1574, 1983 |
| Lsp1109I | GCAGC | 9 cut(s) | 244, 286, 859, 1057, 1151, 1255, 1456, 1693, 1705 |
| LweI | GCATC | 4 cut(s) | 88, 736, 1088, 1588 |
| MaeI | CTAG | 3 cut(s) | 611, 1446, 1740 |
| MaeII | ACGT | 5 cut(s) | 147, 881, 1210, 1216, 1786 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 8 cut(s) | 189, 777, 924, 953, 1005, 1108, 1395, 1847 |
| MboI | GATC | 8 cut(s) | 187, 775, 922, 951, 1003, 1106, 1393, 1845 |
| MflI | RGATCY | 1 cut(s) | 1106 |
| MhlI | GDGCHC | 2 cut(s) | 1560, 1988 |
| MluCI | AATT | 6 cut(s) | 264, 686, 780, 1283, 1306, 1974 |
| MlyI | GAGTC | 1 cut(s) | 431 |
| MmeI | TCCRAC | 3 cut(s) | 795, 1146, 1961 |
| MseI | TTAA | 7 cut(s) | 138, 201, 698, 785, 1059, 1355, 1995 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1250, 1640 |
| MspA1I | CMGCKG | 1 cut(s) | 1142 |
| MspR9I | CCNGG | 2 cut(s) | 384, 1421 |
| Mva1269I | GAATGC | 3 cut(s) | 670, 831, 1072 |
| MvaI | CCWGG | 2 cut(s) | 384, 1421 |
| MvnI | CGCG | 1 cut(s) | 1830 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 461, 736, 856, 1076, 1412, 1715, 1724 |
| NdeI | CATATG | 1 cut(s) | 1942 |
| NdeII | GATC | 8 cut(s) | 187, 775, 922, 951, 1003, 1106, 1393, 1845 |
| PaeR7I | CTCGAG | 2 cut(s) | 600, 1007 |
| PciSI | GCTCTTC | 1 cut(s) | 750 |
| PctI | GAATGC | 3 cut(s) | 670, 831, 1072 |
| PflFI | GACNNNGTC | 1 cut(s) | 1157 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1358, 1946 |
| PkrI | GCNGC | 9 cut(s) | 259, 276, 849, 1072, 1141, 1270, 1471, 1708, 1720 |
| PleI | GAGTC | 1 cut(s) | 431 |
| PpsI | GAGTC | 1 cut(s) | 431 |
| PpuMI | RGGWCCY | 1 cut(s) | 1743 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1483 |
| Psp124BI | GAGCTC | 1 cut(s) | 1560 |
| Psp1406I | AACGTT | 1 cut(s) | 881 |
| Psp5II | RGGWCCY | 1 cut(s) | 1743 |
| Psp6I | CCWGG | 2 cut(s) | 382, 1419 |
| PspGI | CCWGG | 2 cut(s) | 382, 1419 |
| PspPI | GGNCC | 3 cut(s) | 1235, 1743, 1937 |
| PspPPI | RGGWCCY | 1 cut(s) | 1743 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1577 |
| PsuI | RGATCY | 1 cut(s) | 1106 |
| PsyI | GACNNNGTC | 1 cut(s) | 1157 |
| PvuII | CAGCTG | 1 cut(s) | 1142 |
| RsaI | GTAC | 4 cut(s) | 634, 933, 1566, 1914 |
| RsaNI | GTAC | 4 cut(s) | 633, 932, 1565, 1913 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1250, 1640 |
| SacI | GAGCTC | 1 cut(s) | 1560 |
| SapI | GCTCTTC | 1 cut(s) | 750 |
| SaqAI | TTAA | 7 cut(s) | 138, 201, 698, 785, 1059, 1355, 1995 |
| SatI | GCNGC | 9 cut(s) | 258, 275, 848, 1071, 1140, 1269, 1470, 1707, 1719 |
| Sau3AI | GATC | 8 cut(s) | 187, 775, 922, 951, 1003, 1106, 1393, 1845 |
| Sau96I | GGNCC | 3 cut(s) | 1235, 1743, 1937 |
| ScaI | AGTACT | 1 cut(s) | 1566 |
| SchI | GAGTC | 1 cut(s) | 431 |
| ScrFI | CCNGG | 2 cut(s) | 384, 1421 |
| SduI | GDGCHC | 2 cut(s) | 1560, 1988 |
| SfaNI | GCATC | 4 cut(s) | 88, 736, 1088, 1588 |
| Sfr274I | CTCGAG | 2 cut(s) | 600, 1007 |
| SinI | GGWCC | 3 cut(s) | 1235, 1743, 1937 |
| SlaI | CTCGAG | 2 cut(s) | 600, 1007 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1250, 1640 |
| SmlI | CTYRAG | 5 cut(s) | 518, 600, 896, 1007, 1274 |
| SmoI | CTYRAG | 5 cut(s) | 518, 600, 896, 1007, 1274 |
| Sse9I | AATT | 6 cut(s) | 264, 686, 780, 1283, 1306, 1974 |
| SsiI | CCGC | 2 cut(s) | 303, 464 |
| SspMI | CTAG | 3 cut(s) | 611, 1446, 1740 |
| SstI | GAGCTC | 1 cut(s) | 1560 |
| StyD4I | CCNGG | 2 cut(s) | 382, 1419 |
| TaaI | ACNGT | 3 cut(s) | 181, 1159, 1774 |
| TaiI | ACGT | 5 cut(s) | 150, 884, 1213, 1219, 1789 |
| TaqI | TCGA | 8 cut(s) | 96, 132, 186, 554, 601, 1008, 1477, 1834 |
| TasI | AATT | 6 cut(s) | 264, 686, 780, 1283, 1306, 1974 |
| TatI | WGTACW | 2 cut(s) | 931, 1564 |
| Tru1I | TTAA | 7 cut(s) | 138, 201, 698, 785, 1059, 1355, 1995 |
| Tru9I | TTAA | 7 cut(s) | 138, 201, 698, 785, 1059, 1355, 1995 |
| TscAI | CASTG | 1 cut(s) | 1050 |
| TseI | GCWGC | 9 cut(s) | 257, 274, 847, 1070, 1139, 1268, 1469, 1706, 1718 |
| TspGWI | ACGGA | 1 cut(s) | 1558 |
| TspRI | CASTG | 1 cut(s) | 1050 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1157 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1358, 1946 |
| VpaK11BI | GGWCC | 3 cut(s) | 1235, 1743, 1937 |
| XhoI | CTCGAG | 2 cut(s) | 600, 1007 |
| XspI | CTAG | 3 cut(s) | 611, 1446, 1740 |
| ZrmI | AGTACT | 1 cut(s) | 1566 |