RLG00000002290

Something about silencing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
31638690 .. 31644719
6030 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002290

Sequence Viewer

Length: 1998 bp
ATGGGTAAGAGAGGAAAGAGTAGTCAGAGAAAAGGCACTGAAAACCCTACTAAGACAAAGTTCCATGCCGTTGAAGACGACATGAATGATGAAGTCGATGCCTTTATGAAACAAAGAGATATTGTTCCCCTCGACCTTAATCAAGACGTTACAGATTCCGATGAAGATAACGAGCAGACAGTTTTCGATCTTCAGAATGTTAATGACGACGACGAGGAAGAGGAAGACGACGATGATATCCCCAATACTGGAATGGCTGCAAAAATTGTTAGGCAGCAGAAGTTTATGAGGGCGAAGTTTGGCGGAGTTGAGGATGAAATGCTTGATGAAGAAGAAGAAGAAGATGAAGAAAAGCCGATATGGGGTGGAAGGAGACCTGGTTATCATGGTGGCGATAATCGTGATTTTGAGGAAAAATCAAGCGACGATGACTCTGCTGAAGAGGAAGCGAGAGAAGCAGAGAGGATTCGGAGAGAAAAGGCAAAGTCATCAACACGAGAAGACTTTGGGCTTGAGGATGATAGTGAAGATGAGAGTAATAGGGAATCGACTTTTGAGGAAATGTCAGTTCATGGAAAAAGTGAAAAAAAGTCTCGAGTGATACTAGAAGTAGCAGATGACATGGATACAGCTTATGAGGAGGTCAAGAAAGATTTGAATGCTTTGTCAAAGGAGGAACAATTATCTGTCTTAAACAATACTGCACCAGAGCTGGTTGGTTTGCTGGCAGAGCTGAATGATGCACTTGAAGAGCTTGAAAACAGAGTTGATCCAATTTTAATCAAGGTTAGAAGGGGTGAGGTCAGGATGGAAGGAGGAATGCGCTATTTAGAGGTGAAGCAGCTTCTTCTGCTGGCGTATTCCCAAGCAATAACGTTCTACCTTCTTCTCAAGTCTGAAGGCCAACAAGTTCGTGATCATCCTGTACTTGCTCGCCTTGTAGAGATCAAGAGTTTATTGGATAAGATGAAGCAACTGGATGAGAATCTTCCATCTGATCTCGAGGAAATCATAAACAAATATAATGGGATGGAAGCAGTGATGAAATCAGTTAAAGTGAATGCTGCAAAAGCATCGGATACTTTTGCTAAAGGATACAGATCCCAACTTGTCTCACTTGAACCAAAAGAAGCAGCTGTGTCGCATGACACAGTCCAGTTGGAAAAGGTGAAGTCTCTGAAGGATGATGAAAAAATGGGAAAACGCAAACGTCAGAGTGATGAAGTTGGTTCACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAATTGAAGCAGAAGGGTGTTTTCAATTCCATCACTCCAAGAACTGATAGACCCCAGAAACATCTGAAGCCATTAAATGGGAAGCTTGAATCGTATGATGATTTTGATGATGATCCTGTAAATGCTGAAGGCGCTAACCAGGGTCATGCAAGTTCATTGAGTGCTAGTAAAGTTTCCCAACTTGTTGCTGCTAATCGACATAAGTCAAAGATTGTTTCAGGCGATGATGACTTACCTCAGAGAGATGATATTGGGGAAAGACGGAGAAAACATGAGCTCCGAGTACTGGCAGGAGCTGGAATCAAGTCCGAGGATGATGCTGGAGAAAATGACACTATTTCAGATGATGGAGACATTGAGATGGAGGATAGTGAAGCTGGAGATTCAGAAGATGACTTTTACGAACAAGCAAAACAAAACCGAGCTGCAAAACTCGCTGCCAAAGCTGACATCCATTCTAGGTCCTCCTCAGTTCCATCTTTGCCTGAAACTGTGGATGGCAAACGTCATATTACGTATCAGATGGAGAAGAACAGAGGACTTACTCGCGCTCGAAAGAAGCTGATCAAGAATCCAAGAAAGAAATACAAGTTGAAGCATGAGAAGAAAATGAAGAATCGGAAAGGACAGGTACGGGAAGTCAAGAAGCCTATTGGTCCATACGGTGGGGAGACATCTGGAATCAATCCGAGAATCAGTCGGAGCACCAGATTTAAGAACTAA

Protein Analysis

666

Amino Acids

75.27

Weight (kDa)

5.13

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 242 - 322 3.7e-19 Sas10/Utp3/C1D family
Sas10 PF09368 591 - 663 2.7e-26 Sas10 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1352, 1940
AccII CGCG 1 cut(s) 1824
AciI CCGC 1 cut(s) 303
AclI AACGTT 1 cut(s) 875
AclWI GGATC 3 cut(s) 764, 1095, 1382
AcuI CTGAAG 6 cut(s) 176, 459, 918, 1199, 1361, 1422
AfaI GTAC 3 cut(s) 927, 1560, 1908
AfiI CCNNNNNNNGG 5 cut(s) 248, 362, 1352, 1561, 1940
AjnI CCWGG 2 cut(s) 376, 1413
Alw21I GWGCWC 2 cut(s) 1554, 1982
Alw26I GTCTC 6 cut(s) 367, 597, 1117, 1179, 1620, 1940
AlwI GGATC 3 cut(s) 764, 1095, 1382
AlwNI CAGNNNCTG 1 cut(s) 1571
Ama87I CYCGRG 2 cut(s) 594, 1001
AoxI GGCC 1 cut(s) 901
ApeKI GCWGC 9 cut(s) 257, 274, 841, 1064, 1133, 1262, 1463, 1700, 1712
AspLEI GCGC 3 cut(s) 825, 1409, 1826
AspS9I GGNCC 2 cut(s) 1737, 1931
AsuHPI GGTGA 3 cut(s) 809, 847, 1180
AvaI CYCGRG 2 cut(s) 594, 1001
AvaII GGWCC 2 cut(s) 1737, 1931
BanII GRGCYC 1 cut(s) 1554
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 3 cut(s) 81, 231, 507
Bbv12I GWGCWC 2 cut(s) 1554, 1982
BbvI GCAGC 9 cut(s) 244, 286, 853, 1051, 1145, 1249, 1450, 1687, 1699
BccI CCATC 9 cut(s) 802, 1000, 1024, 1313, 1616, 1630, 1759, 1766, 1792
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 8 cut(s) 416, 450, 1056, 1090, 1122, 1156, 1574, 1608
BciT130I CCWGG 2 cut(s) 378, 1415
BciVI GTATCC 3 cut(s) 619, 1072, 1088
BclI TGATCA 2 cut(s) 916, 1839
BcoDI GTCTC 6 cut(s) 367, 597, 1117, 1179, 1620, 1940
BfaI CTAG 3 cut(s) 605, 1440, 1734
BfoI RGCGCY 1 cut(s) 1410
BfuI GTATCC 3 cut(s) 619, 1072, 1088
BisI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
BlsI GCNGC 9 cut(s) 259, 276, 843, 1066, 1135, 1264, 1465, 1702, 1714
BmcAI AGTACT 1 cut(s) 1560
Bme1390I CCNGG 2 cut(s) 378, 1415
Bme18I GGWCC 2 cut(s) 1737, 1931
BmeT110I CYCGRG 2 cut(s) 594, 1001
BmgT120I GGNCC 2 cut(s) 1737, 1931
BmrFI CCNGG 2 cut(s) 378, 1415
BmsI GCATC 4 cut(s) 88, 730, 1082, 1582
BoxI GACNNNNGTC 1 cut(s) 1477
BpiI GAAGAC 3 cut(s) 81, 231, 507
BpmI CTGGAG 2 cut(s) 1617, 1674
BpuEI CTTGAG 3 cut(s) 533, 875, 1289
BsaAI YACGTR 1 cut(s) 1791
BsaBI GATNNNNATC 3 cut(s) 984, 1099, 1386
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 1414, 1584
BsaXI ACNNNNNCTCC 4 cut(s) 364, 394, 1536, 1566
Bsc4I CCNNNNNNNGG 5 cut(s) 248, 362, 1352, 1561, 1940
Bse1I ACTGG 4 cut(s) 253, 981, 1156, 1566
Bse8I GATNNNNATC 3 cut(s) 984, 1099, 1386
BseBI CCWGG 2 cut(s) 378, 1415
BseDI CCNNGG 2 cut(s) 1414, 1584
BseJI GATNNNNATC 3 cut(s) 984, 1099, 1386
BseLI CCNNNNNNNGG 5 cut(s) 248, 362, 1352, 1561, 1940
BseMII CTCAG 2 cut(s) 1526, 1758
BseNI ACTGG 4 cut(s) 253, 981, 1156, 1566
BseRI GAGGAG 2 cut(s) 653, 1732
BseXI GCAGC 9 cut(s) 244, 286, 853, 1051, 1145, 1249, 1450, 1687, 1699
BsgI GTGCAG 1 cut(s) 687
Bsh1236I CGCG 1 cut(s) 1824
BshFI GGCC 1 cut(s) 903
BsiHKAI GWGCWC 2 cut(s) 1554, 1982
BsiHKCI CYCGRG 2 cut(s) 594, 1001
BslI CCNNNNNNNGG 5 cut(s) 248, 362, 1352, 1561, 1940
BsmAI GTCTC 6 cut(s) 367, 597, 1117, 1179, 1620, 1940
BsmI GAATGC 3 cut(s) 664, 825, 1066
BsnI GGCC 1 cut(s) 903
Bso31I GGTCTC 1 cut(s) 367
BsoBI CYCGRG 2 cut(s) 594, 1001
Bsp1286I GDGCHC 2 cut(s) 1554, 1982
Bsp143I GATC 8 cut(s) 187, 769, 916, 945, 997, 1100, 1387, 1839
BspACI CCGC 1 cut(s) 303
BspANI GGCC 1 cut(s) 903
BspCNI CTCAG 2 cut(s) 1525, 1757
BspFNI CGCG 1 cut(s) 1824
BspPI GGATC 3 cut(s) 764, 1095, 1382
BspQI GCTCTTC 1 cut(s) 744
BspTNI GGTCTC 1 cut(s) 367
BsrI ACTGG 4 cut(s) 253, 981, 1156, 1566
BssECI CCNNGG 2 cut(s) 1414, 1584
BssMI GATC 8 cut(s) 187, 769, 916, 945, 997, 1100, 1387, 1839
BssSI CACGAG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 378, 1415
Bst4CI ACNGT 4 cut(s) 181, 1153, 1768, 1940
Bst6I CTCTTC 3 cut(s) 213, 435, 744
BstBAI YACGTR 1 cut(s) 1791
BstC8I GCNNGC 3 cut(s) 726, 855, 934
BstDEI CTNAG 3 cut(s) 51, 1512, 1744
BstFNI CGCG 1 cut(s) 1824
BstH2I RGCGCY 1 cut(s) 1410
BstHHI GCGC 3 cut(s) 825, 1409, 1826
BstKTI GATC 8 cut(s) 190, 772, 919, 948, 1000, 1103, 1390, 1842
BstMAI GTCTC 6 cut(s) 367, 597, 1117, 1179, 1620, 1940
BstMBI GATC 8 cut(s) 187, 769, 916, 945, 997, 1100, 1387, 1839
BstMWI GCNNNNNNNGC 7 cut(s) 455, 730, 850, 1070, 1406, 1709, 1718
BstNI CCWGG 2 cut(s) 378, 1415
BstPAI GACNNNNGTC 1 cut(s) 1477
BstSCI CCNGG 2 cut(s) 376, 1413
BstSNI TACGTA 1 cut(s) 1791
BstUI CGCG 1 cut(s) 1824
BstV1I GCAGC 9 cut(s) 244, 286, 853, 1051, 1145, 1249, 1450, 1687, 1699
BstV2I GAAGAC 3 cut(s) 81, 231, 507
BstX2I RGATCY 1 cut(s) 1100
BstYI RGATCY 1 cut(s) 1100
BsuI GTATCC 3 cut(s) 619, 1072, 1088
BsuRI GGCC 1 cut(s) 903
BtgZI GCGATG 1 cut(s) 1512
BtsI GCAGTG 1 cut(s) 1044
BtsIMutI CAGTG 2 cut(s) 36, 1044
Cac8I GCNNGC 3 cut(s) 726, 855, 934
CaiI CAGNNNCTG 1 cut(s) 1571
CfoI GCGC 3 cut(s) 825, 1409, 1826
Cfr13I GGNCC 2 cut(s) 1737, 1931
CsiI ACCWGGT 1 cut(s) 376
Csp6I GTAC 3 cut(s) 926, 1559, 1907
CviQI GTAC 3 cut(s) 926, 1559, 1907
DdeI CTNAG 3 cut(s) 51, 1512, 1744
DpnI GATC 8 cut(s) 189, 771, 918, 947, 999, 1102, 1389, 1841
DpnII GATC 8 cut(s) 187, 769, 916, 945, 997, 1100, 1387, 1839
Eam1104I CTCTTC 3 cut(s) 213, 435, 744
EarI CTCTTC 3 cut(s) 213, 435, 744
EciI GGCGGA 1 cut(s) 318
Ecl136II GAGCTC 1 cut(s) 1552
Eco105I TACGTA 1 cut(s) 1791
Eco24I GRGCYC 1 cut(s) 1554
Eco31I GGTCTC 1 cut(s) 367
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 2 cut(s) 1737, 1931
Eco53kI GAGCTC 1 cut(s) 1552
Eco57I CTGAAG 6 cut(s) 176, 459, 918, 1199, 1361, 1422
Eco88I CYCGRG 2 cut(s) 594, 1001
EcoICRI GAGCTC 1 cut(s) 1552
EcoO109I RGGNCCY 1 cut(s) 1737
EcoRII CCWGG 2 cut(s) 376, 1413
EcoRV GATATC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 1554
FbaI TGATCA 2 cut(s) 916, 1839
Fnu4HI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
FriOI GRGCYC 1 cut(s) 1554
Fsp4HI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
FspBI CTAG 3 cut(s) 605, 1440, 1734
GlaI GCGC 3 cut(s) 824, 1408, 1825
GluI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
GsuI CTGGAG 2 cut(s) 1617, 1674
HaeII RGCGCY 1 cut(s) 1410
HaeIII GGCC 1 cut(s) 903
HhaI GCGC 3 cut(s) 825, 1409, 1826
Hin6I GCGC 3 cut(s) 823, 1407, 1824
HinP1I GCGC 3 cut(s) 823, 1407, 1824
HindIII AAGCTT 1 cut(s) 1358
HphI GGTGA 3 cut(s) 809, 847, 1180
Hpy166II GTNNAC 1 cut(s) 1232
Hpy8I GTNNAC 1 cut(s) 1232
Hpy99I CGWCG 4 cut(s) 212, 215, 233, 428
HpyAV CCTTC 8 cut(s) 363, 786, 806, 893, 893, 1174, 1282, 1397
HpyCH4III ACNGT 4 cut(s) 181, 1153, 1768, 1940
HpyCH4IV ACGT 5 cut(s) 147, 875, 1210, 1780, 1790
HpyCH4V TGCA 6 cut(s) 260, 704, 743, 1067, 1424, 1703
HpyF10VI GCNNNNNNNGC 7 cut(s) 455, 730, 850, 1070, 1406, 1709, 1718
HpyF3I CTNAG 3 cut(s) 51, 1512, 1744
HpySE526I ACGT 5 cut(s) 147, 875, 1210, 1780, 1790
HspAI GCGC 3 cut(s) 823, 1407, 1824
Ksp22I TGATCA 2 cut(s) 916, 1839
Kzo9I GATC 8 cut(s) 187, 769, 916, 945, 997, 1100, 1387, 1839
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 3 cut(s) 1557, 1568, 1977
Lsp1109I GCAGC 9 cut(s) 244, 286, 853, 1051, 1145, 1249, 1450, 1687, 1699
LweI GCATC 4 cut(s) 88, 730, 1082, 1582
MabI ACCWGGT 1 cut(s) 376
MaeI CTAG 3 cut(s) 605, 1440, 1734
MaeII ACGT 5 cut(s) 147, 875, 1210, 1780, 1790
MaeIII GTNAC 1 cut(s) 148
MalI GATC 8 cut(s) 189, 771, 918, 947, 999, 1102, 1389, 1841
MboI GATC 8 cut(s) 187, 769, 916, 945, 997, 1100, 1387, 1839
MflI RGATCY 1 cut(s) 1100
MhlI GDGCHC 2 cut(s) 1554, 1982
MluCI AATT 5 cut(s) 264, 680, 774, 1277, 1300
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 2 cut(s) 1140, 1955
MseI TTAA 7 cut(s) 138, 201, 692, 779, 1053, 1349, 1989
MslI CAYNNNNRTG 2 cut(s) 1244, 1634
MspA1I CMGCKG 1 cut(s) 1136
MspR9I CCNGG 2 cut(s) 378, 1415
Mva1269I GAATGC 3 cut(s) 664, 825, 1066
MvaI CCWGG 2 cut(s) 378, 1415
MvnI CGCG 1 cut(s) 1824
MwoI GCNNNNNNNGC 7 cut(s) 455, 730, 850, 1070, 1406, 1709, 1718
NdeII GATC 8 cut(s) 187, 769, 916, 945, 997, 1100, 1387, 1839
PaeR7I CTCGAG 2 cut(s) 594, 1001
PciSI GCTCTTC 1 cut(s) 744
PctI GAATGC 3 cut(s) 664, 825, 1066
PflFI GACNNNGTC 1 cut(s) 1151
PflMI CCANNNNNTGG 2 cut(s) 1352, 1940
PkrI GCNGC 9 cut(s) 259, 276, 843, 1066, 1135, 1264, 1465, 1702, 1714
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 1791
PpuMI RGGWCCY 1 cut(s) 1737
PshAI GACNNNNGTC 1 cut(s) 1477
Psp124BI GAGCTC 1 cut(s) 1554
Psp1406I AACGTT 1 cut(s) 875
Psp5II RGGWCCY 1 cut(s) 1737
Psp6I CCWGG 2 cut(s) 376, 1413
PspGI CCWGG 2 cut(s) 376, 1413
PspPI GGNCC 2 cut(s) 1737, 1931
PspPPI RGGWCCY 1 cut(s) 1737
PstNI CAGNNNCTG 1 cut(s) 1571
PsuI RGATCY 1 cut(s) 1100
PsyI GACNNNGTC 1 cut(s) 1151
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 3 cut(s) 927, 1560, 1908
RsaNI GTAC 3 cut(s) 926, 1559, 1907
RseI CAYNNNNRTG 2 cut(s) 1244, 1634
SacI GAGCTC 1 cut(s) 1554
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 7 cut(s) 138, 201, 692, 779, 1053, 1349, 1989
SatI GCNGC 9 cut(s) 258, 275, 842, 1065, 1134, 1263, 1464, 1701, 1713
Sau3AI GATC 8 cut(s) 187, 769, 916, 945, 997, 1100, 1387, 1839
Sau96I GGNCC 2 cut(s) 1737, 1931
ScaI AGTACT 1 cut(s) 1560
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 378, 1415
SduI GDGCHC 2 cut(s) 1554, 1982
SexAI ACCWGGT 1 cut(s) 376
SfaNI GCATC 4 cut(s) 88, 730, 1082, 1582
Sfr274I CTCGAG 2 cut(s) 594, 1001
SinI GGWCC 2 cut(s) 1737, 1931
SlaI CTCGAG 2 cut(s) 594, 1001
SmiMI CAYNNNNRTG 2 cut(s) 1244, 1634
SmlI CTYRAG 5 cut(s) 512, 594, 890, 1001, 1268
SmoI CTYRAG 5 cut(s) 512, 594, 890, 1001, 1268
SnaBI TACGTA 1 cut(s) 1791
Sse9I AATT 5 cut(s) 264, 680, 774, 1277, 1300
SsiI CCGC 1 cut(s) 303
SspMI CTAG 3 cut(s) 605, 1440, 1734
SstI GAGCTC 1 cut(s) 1554
StyD4I CCNGG 2 cut(s) 376, 1413
TaaI ACNGT 4 cut(s) 181, 1153, 1768, 1940
TaiI ACGT 5 cut(s) 150, 878, 1213, 1783, 1793
TaqI TCGA 8 cut(s) 96, 132, 186, 548, 595, 1002, 1471, 1828
TasI AATT 5 cut(s) 264, 680, 774, 1277, 1300
TatI WGTACW 2 cut(s) 925, 1558
Tru1I TTAA 7 cut(s) 138, 201, 692, 779, 1053, 1349, 1989
Tru9I TTAA 7 cut(s) 138, 201, 692, 779, 1053, 1349, 1989
TscAI CASTG 2 cut(s) 43, 1044
TseI GCWGC 9 cut(s) 257, 274, 841, 1064, 1133, 1262, 1463, 1700, 1712
TspGWI ACGGA 1 cut(s) 1552
TspRI CASTG 2 cut(s) 43, 1044
Tth111I GACNNNGTC 1 cut(s) 1151
Van91I CCANNNNNTGG 2 cut(s) 1352, 1940
VpaK11BI GGWCC 2 cut(s) 1737, 1931
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XhoI CTCGAG 2 cut(s) 594, 1001
XspI CTAG 3 cut(s) 605, 1440, 1734
ZrmI AGTACT 1 cut(s) 1560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.