Rh7AG327800

Something about silencing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
37554845 .. 37561562
6718 bp
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UTR
Exon/CDS
Intron
Rh7AG327800.1

Sequence Viewer

Length: 1746 bp
ATGGGTAAGAGAGGAAAGAGTAGTCTGAGAAAAGGCAATGAAAACCCTACTAAGACAAAGTTCCATGCCGTTGAAGACGACATGGATGATGAAGTCGATGCCTTTATGAAACAAAGAGATATTGTTCCCCTCGACCTTGATCAAGACGTTACAGATTCCGATGAAGATAACGAGCAAACAGTTTTCGATCTTCAGAATGTTAATGATGACGACGACGAAGAGGAAGACGATGATGATATCCCAGCCGATACTGGAATGGCTGCAAAAATTGTTAGGCAGCAGAAGTTTATGAGGGCGAAGTTTGGCGGAGTTGAGGATGAAATGCTTGATGAAGAAGAAGAAGAAGAAGAAAAGCCGATATGGGGTGGAAGGAGACCTGGTTATCATGGTGGCGATAATCGTGATTTTGAGGAAAAATCAAGCGACGATGACTCTGCTGAAGAGGAAGCGAGAGAAGCGGAGAGGATTCGGAGAGAAAAGGCAAAGTCATCAACACGAGAAGACTTTGGGCTTGAGGATGATAGTGAAGATGAGAGTAATAGGGAATCGACTTTTGAGGAAATGTCAGTTCATGGAAAAAGTGAAAAAAAGTCTCGAGTGATACTAGAAGTAGCAGATGACATGGGTACAGCTTATGAGGAGGTCAAGAAAGATTTGAATGCTTTGTCAAAGGAGGAACAATTATCTGTTTTAAACAATACTGCACCAGAGCTGGTTGGTTTGCTGGCAGAGCTGAATGATGCACTTGAAGAGCTTGAAAACAGAGTTGATCCAATTTTAATCAAGGTTAGAAGGGGTGAGGTCATGATGGAAGGAGGAATGCGCTATTTAGAGGTGAAGCAGCTTCTTCTGCTGGCGTATTCCCAAGCAATAACGTTTTACCTTCTTCTCAAGTCTGAAGGCCAACAAGTTCGTGATCATCCTGTACTTGCTCGCCTTGTAGAGATCAAGAGTTTATTGGATAAGATGAAGCAACTGGATGAGAATCTTCCATCTGATCTCGAGGAAATCATAAACAAATATAATGGGATGGAAGCGGTGGTGAAATCGGTTAAAGAGAATGCTGCAAAACCATCGGATACTTTTGCTAAAGGATACAGGTCCCAACTTGTCTCACTTGAACCAAAAGAAACAGCTGTGTCGCATAACACAGTCCAGATGGAAAAGGTGAAGTCTCTGAAGGATGATGAAAAAGTGGGAAAACGTAAACGTCAGAGTGATGAAGTTGGTTCACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAATTGAAGCAGAAGGGTGTTTTCAATTCCATCACTCCAAGAACTGATAGACCCCAGAAACATCTGAAGCCATTAAATGGGAAGCTTGAATCGTATGATGATTTTGATGATGACCCTGTAAATGCTGAAGGTGCTAACCAGGGTCGTGCAAGTTCATTGAGTGCTAGTAAAGTTTCCCAACTTGTTGCTGCTAATCGACATAAGTCAAAGATTGTTTCAGGCGATGATGACTTACCTCAGAGAGATGATATTGGGGAAAGACGGAGAAAACATGAGCTCCGAGTACTGGCAGGAGCTGGAATCAAGTCCGAGGATGATGCTGGAGAAAATGACACTATTTCAGATGATGGAGACATTGAGATGGATGGAGATTCAGAAGATGACTTTTACGAACAAGCAAAACAAAACCGAGCTGCAAAACTCGCTGCCAAAGCTGACATCCATTCTAGGTTTGTATTGAACTGTGGTTAA

Protein Analysis

581

Amino Acids

65.45

Weight (kDa)

4.67

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 242 - 322 3.4e-19 Sas10/Utp3/C1D family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1352
AciI CCGC 3 cut(s) 306, 458, 1037
AclI AACGTT 1 cut(s) 875
AclWI GGATC 1 cut(s) 764
AcuI CTGAAG 6 cut(s) 176, 459, 918, 1199, 1361, 1422
AfaI GTAC 3 cut(s) 628, 927, 1560
AfiI CCNNNNNNNGG 3 cut(s) 362, 1352, 1561
AjnI CCWGG 2 cut(s) 376, 1413
Alw21I GWGCWC 1 cut(s) 1554
Alw26I GTCTC 5 cut(s) 367, 597, 1117, 1179, 1620
AlwI GGATC 1 cut(s) 764
AlwNI CAGNNNCTG 1 cut(s) 1571
Ama87I CYCGRG 2 cut(s) 594, 1001
AoxI GGCC 1 cut(s) 901
ApeKI GCWGC 8 cut(s) 260, 277, 841, 1064, 1262, 1463, 1688, 1700
AspLEI GCGC 1 cut(s) 825
AspS9I GGNCC 1 cut(s) 1101
AsuHPI GGTGA 4 cut(s) 809, 847, 1054, 1180
AvaI CYCGRG 2 cut(s) 594, 1001
AvaII GGWCC 1 cut(s) 1101
BanII GRGCYC 1 cut(s) 1554
BauI CACGAG 1 cut(s) 495
BbsI GAAGAC 3 cut(s) 81, 231, 507
Bbv12I GWGCWC 1 cut(s) 1554
BbvI GCAGC 8 cut(s) 247, 289, 853, 1051, 1249, 1450, 1675, 1687
BccI CCATC 9 cut(s) 802, 1000, 1024, 1081, 1153, 1313, 1616, 1630, 1634
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 6 cut(s) 416, 450, 1056, 1090, 1574, 1608
BciT130I CCWGG 2 cut(s) 378, 1415
BciVI GTATCC 2 cut(s) 1072, 1088
BclI TGATCA 2 cut(s) 139, 916
BcoDI GTCTC 5 cut(s) 367, 597, 1117, 1179, 1620
BfaI CTAG 3 cut(s) 605, 1440, 1722
BfuI GTATCC 2 cut(s) 1072, 1088
BisI GCNGC 8 cut(s) 261, 278, 842, 1065, 1263, 1464, 1689, 1701
BlsI GCNGC 8 cut(s) 262, 279, 843, 1066, 1264, 1465, 1690, 1702
BmcAI AGTACT 1 cut(s) 1560
Bme1390I CCNGG 2 cut(s) 378, 1415
Bme18I GGWCC 1 cut(s) 1101
BmeT110I CYCGRG 2 cut(s) 594, 1001
BmgT120I GGNCC 1 cut(s) 1101
BmiI GGNNCC 1 cut(s) 1103
BmrFI CCNGG 2 cut(s) 378, 1415
BmsI GCATC 3 cut(s) 88, 730, 1582
BoxI GACNNNNGTC 1 cut(s) 1477
BpiI GAAGAC 3 cut(s) 81, 231, 507
BpmI CTGGAG 1 cut(s) 1617
BpuEI CTTGAG 3 cut(s) 533, 875, 1289
BsaBI GATNNNNATC 1 cut(s) 984
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 1414, 1584
BsaXI ACNNNNNCTCC 4 cut(s) 364, 394, 1536, 1566
Bsc4I CCNNNNNNNGG 3 cut(s) 362, 1352, 1561
Bse1I ACTGG 3 cut(s) 256, 981, 1566
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 984
BseBI CCWGG 2 cut(s) 378, 1415
BseDI CCNNGG 2 cut(s) 1414, 1584
BseJI GATNNNNATC 1 cut(s) 984
BseLI CCNNNNNNNGG 3 cut(s) 362, 1352, 1561
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 17, 1526
BseNI ACTGG 3 cut(s) 256, 981, 1566
BseRI GAGGAG 1 cut(s) 653
BseXI GCAGC 8 cut(s) 247, 289, 853, 1051, 1249, 1450, 1675, 1687
BseYI CCCAGC 1 cut(s) 241
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 1 cut(s) 903
BsiHKAI GWGCWC 1 cut(s) 1554
BsiHKCI CYCGRG 2 cut(s) 594, 1001
BslFI GGGAC 1 cut(s) 1087
BslI CCNNNNNNNGG 3 cut(s) 362, 1352, 1561
BsmAI GTCTC 5 cut(s) 367, 597, 1117, 1179, 1620
BsmFI GGGAC 1 cut(s) 1087
BsmI GAATGC 3 cut(s) 664, 825, 1066
BsnI GGCC 1 cut(s) 903
Bso31I GGTCTC 1 cut(s) 367
BsoBI CYCGRG 2 cut(s) 594, 1001
Bsp1286I GDGCHC 1 cut(s) 1554
Bsp143I GATC 6 cut(s) 139, 187, 769, 916, 945, 997
BspACI CCGC 3 cut(s) 306, 458, 1037
BspANI GGCC 1 cut(s) 903
BspCNI CTCAG 2 cut(s) 18, 1525
BspHI TCATGA 1 cut(s) 804
BspLI GGNNCC 1 cut(s) 1103
BspPI GGATC 1 cut(s) 764
BspQI GCTCTTC 1 cut(s) 744
BspTNI GGTCTC 1 cut(s) 367
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 3 cut(s) 256, 981, 1566
BssECI CCNNGG 2 cut(s) 1414, 1584
BssMI GATC 6 cut(s) 139, 187, 769, 916, 945, 997
BssSI CACGAG 1 cut(s) 495
Bst2BI CACGAG 1 cut(s) 495
Bst2UI CCWGG 2 cut(s) 378, 1415
Bst4CI ACNGT 3 cut(s) 181, 1153, 1739
Bst6I CTCTTC 3 cut(s) 213, 435, 744
BstC8I GCNNGC 3 cut(s) 726, 855, 934
BstDEI CTNAG 3 cut(s) 26, 51, 1512
BstHHI GCGC 1 cut(s) 825
BstKTI GATC 6 cut(s) 142, 190, 772, 919, 948, 1000
BstMAI GTCTC 5 cut(s) 367, 597, 1117, 1179, 1620
BstMBI GATC 6 cut(s) 139, 187, 769, 916, 945, 997
BstMWI GCNNNNNNNGC 6 cut(s) 455, 730, 850, 1406, 1697, 1706
BstNI CCWGG 2 cut(s) 378, 1415
BstPAI GACNNNNGTC 1 cut(s) 1477
BstSCI CCNGG 2 cut(s) 376, 1413
BstV1I GCAGC 8 cut(s) 247, 289, 853, 1051, 1249, 1450, 1675, 1687
BstV2I GAAGAC 3 cut(s) 81, 231, 507
BsuI GTATCC 2 cut(s) 1072, 1088
BsuRI GGCC 1 cut(s) 903
BtgZI GCGATG 1 cut(s) 1512
Cac8I GCNNGC 3 cut(s) 726, 855, 934
CaiI CAGNNNCTG 1 cut(s) 1571
CciI TCATGA 1 cut(s) 804
CfoI GCGC 1 cut(s) 825
Cfr13I GGNCC 1 cut(s) 1101
CsiI ACCWGGT 1 cut(s) 376
Csp6I GTAC 3 cut(s) 627, 926, 1559
CviAII CATG 8 cut(s) 65, 82, 386, 572, 622, 805, 1240, 1547
CviQI GTAC 3 cut(s) 627, 926, 1559
DdeI CTNAG 3 cut(s) 26, 51, 1512
DpnI GATC 6 cut(s) 141, 189, 771, 918, 947, 999
DpnII GATC 6 cut(s) 139, 187, 769, 916, 945, 997
DraI TTTAAA 1 cut(s) 693
Eam1104I CTCTTC 3 cut(s) 213, 435, 744
EarI CTCTTC 3 cut(s) 213, 435, 744
EciI GGCGGA 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 1552
Eco24I GRGCYC 1 cut(s) 1554
Eco31I GGTCTC 1 cut(s) 367
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 1101
Eco53kI GAGCTC 1 cut(s) 1552
Eco57I CTGAAG 6 cut(s) 176, 459, 918, 1199, 1361, 1422
Eco88I CYCGRG 2 cut(s) 594, 1001
EcoICRI GAGCTC 1 cut(s) 1552
EcoO109I RGGNCCY 1 cut(s) 1101
EcoRII CCWGG 2 cut(s) 376, 1413
EcoRV GATATC 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 1554
FaeI CATG 8 cut(s) 68, 85, 389, 575, 625, 808, 1243, 1550
FaqI GGGAC 1 cut(s) 1087
FatI CATG 8 cut(s) 64, 81, 385, 571, 621, 804, 1239, 1546
FbaI TGATCA 2 cut(s) 139, 916
Fnu4HI GCNGC 8 cut(s) 261, 278, 842, 1065, 1263, 1464, 1689, 1701
FriOI GRGCYC 1 cut(s) 1554
Fsp4HI GCNGC 8 cut(s) 261, 278, 842, 1065, 1263, 1464, 1689, 1701
FspBI CTAG 3 cut(s) 605, 1440, 1722
GlaI GCGC 1 cut(s) 824
GluI GCNGC 8 cut(s) 261, 278, 842, 1065, 1263, 1464, 1689, 1701
GsaI CCCAGC 1 cut(s) 245
GsuI CTGGAG 1 cut(s) 1617
HaeIII GGCC 1 cut(s) 903
HhaI GCGC 1 cut(s) 825
Hin1II CATG 8 cut(s) 68, 85, 389, 575, 625, 808, 1243, 1550
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HindIII AAGCTT 1 cut(s) 1358
HinfI GANTC 8 cut(s) 155, 431, 466, 545, 985, 1364, 1575, 1646
HphI GGTGA 4 cut(s) 809, 847, 1054, 1180
Hpy166II GTNNAC 2 cut(s) 1208, 1232
Hpy188III TCNNGA 9 cut(s) 143, 401, 594, 646, 805, 914, 949, 1001, 1156
Hpy8I GTNNAC 2 cut(s) 1208, 1232
Hpy99I CGWCG 3 cut(s) 215, 218, 428
HpyAV CCTTC 8 cut(s) 363, 786, 806, 893, 893, 1174, 1282, 1397
HpyCH4III ACNGT 3 cut(s) 181, 1153, 1739
HpyCH4IV ACGT 4 cut(s) 147, 875, 1204, 1210
HpyCH4V TGCA 6 cut(s) 263, 704, 743, 1067, 1424, 1691
HpyF10VI GCNNNNNNNGC 6 cut(s) 455, 730, 850, 1406, 1697, 1706
HpyF3I CTNAG 3 cut(s) 26, 51, 1512
HpySE526I ACGT 4 cut(s) 147, 875, 1204, 1210
Hsp92II CATG 8 cut(s) 68, 85, 389, 575, 625, 808, 1243, 1550
HspAI GCGC 1 cut(s) 823
Ksp22I TGATCA 2 cut(s) 139, 916
Kzo9I GATC 6 cut(s) 139, 187, 769, 916, 945, 997
LguI GCTCTTC 1 cut(s) 744
LmnI GCTCC 2 cut(s) 1557, 1568
Lsp1109I GCAGC 8 cut(s) 247, 289, 853, 1051, 1249, 1450, 1675, 1687
LweI GCATC 3 cut(s) 88, 730, 1582
MabI ACCWGGT 1 cut(s) 376
MaeI CTAG 3 cut(s) 605, 1440, 1722
MaeII ACGT 4 cut(s) 147, 875, 1204, 1210
MaeIII GTNAC 1 cut(s) 148
MalI GATC 6 cut(s) 141, 189, 771, 918, 947, 999
MboI GATC 6 cut(s) 139, 187, 769, 916, 945, 997
MhlI GDGCHC 1 cut(s) 1554
MluCI AATT 5 cut(s) 267, 680, 774, 1277, 1300
MlyI GAGTC 1 cut(s) 425
MseI TTAA 6 cut(s) 201, 692, 779, 1053, 1349, 1744
MslI CAYNNNNRTG 2 cut(s) 1244, 1634
MspA1I CMGCKG 1 cut(s) 1136
MspR9I CCNGG 2 cut(s) 378, 1415
Mva1269I GAATGC 3 cut(s) 664, 825, 1066
MvaI CCWGG 2 cut(s) 378, 1415
MwoI GCNNNNNNNGC 6 cut(s) 455, 730, 850, 1406, 1697, 1706
NdeII GATC 6 cut(s) 139, 187, 769, 916, 945, 997
NlaIII CATG 8 cut(s) 68, 85, 389, 575, 625, 808, 1243, 1550
NlaIV GGNNCC 1 cut(s) 1103
PaeR7I CTCGAG 2 cut(s) 594, 1001
PagI TCATGA 1 cut(s) 804
PciSI GCTCTTC 1 cut(s) 744
PctI GAATGC 3 cut(s) 664, 825, 1066
PfeI GAWTC 7 cut(s) 155, 466, 545, 985, 1364, 1575, 1646
PflMI CCANNNNNTGG 1 cut(s) 1352
PkrI GCNGC 8 cut(s) 262, 279, 843, 1066, 1264, 1465, 1690, 1702
PleI GAGTC 1 cut(s) 425
PpsI GAGTC 1 cut(s) 425
PpuMI RGGWCCY 1 cut(s) 1101
PshAI GACNNNNGTC 1 cut(s) 1477
Psp124BI GAGCTC 1 cut(s) 1554
Psp1406I AACGTT 1 cut(s) 875
Psp5II RGGWCCY 1 cut(s) 1101
Psp6I CCWGG 2 cut(s) 376, 1413
PspFI CCCAGC 1 cut(s) 241
PspGI CCWGG 2 cut(s) 376, 1413
PspN4I GGNNCC 1 cut(s) 1103
PspPI GGNCC 1 cut(s) 1101
PspPPI RGGWCCY 1 cut(s) 1101
PstNI CAGNNNCTG 1 cut(s) 1571
PvuII CAGCTG 1 cut(s) 1136
RsaI GTAC 3 cut(s) 628, 927, 1560
RsaNI GTAC 3 cut(s) 627, 926, 1559
RseI CAYNNNNRTG 2 cut(s) 1244, 1634
SacI GAGCTC 1 cut(s) 1554
SapI GCTCTTC 1 cut(s) 744
SaqAI TTAA 6 cut(s) 201, 692, 779, 1053, 1349, 1744
SatI GCNGC 8 cut(s) 261, 278, 842, 1065, 1263, 1464, 1689, 1701
Sau3AI GATC 6 cut(s) 139, 187, 769, 916, 945, 997
Sau96I GGNCC 1 cut(s) 1101
ScaI AGTACT 1 cut(s) 1560
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 2 cut(s) 378, 1415
SduI GDGCHC 1 cut(s) 1554
SexAI ACCWGGT 1 cut(s) 376
SfaNI GCATC 3 cut(s) 88, 730, 1582
Sfr274I CTCGAG 2 cut(s) 594, 1001
SinI GGWCC 1 cut(s) 1101
SlaI CTCGAG 2 cut(s) 594, 1001
SmiMI CAYNNNNRTG 2 cut(s) 1244, 1634
SmlI CTYRAG 5 cut(s) 512, 594, 890, 1001, 1268
SmoI CTYRAG 5 cut(s) 512, 594, 890, 1001, 1268
Sse9I AATT 5 cut(s) 267, 680, 774, 1277, 1300
SsiI CCGC 3 cut(s) 306, 458, 1037
SspMI CTAG 3 cut(s) 605, 1440, 1722
SstI GAGCTC 1 cut(s) 1554
StyD4I CCNGG 2 cut(s) 376, 1413
TaaI ACNGT 3 cut(s) 181, 1153, 1739
TaiI ACGT 4 cut(s) 150, 878, 1207, 1213
TaqI TCGA 7 cut(s) 96, 132, 186, 548, 595, 1002, 1471
TasI AATT 5 cut(s) 267, 680, 774, 1277, 1300
TatI WGTACW 2 cut(s) 925, 1558
TfiI GAWTC 7 cut(s) 155, 466, 545, 985, 1364, 1575, 1646
Tru1I TTAA 6 cut(s) 201, 692, 779, 1053, 1349, 1744
Tru9I TTAA 6 cut(s) 201, 692, 779, 1053, 1349, 1744
TseI GCWGC 8 cut(s) 260, 277, 841, 1064, 1262, 1463, 1688, 1700
TspGWI ACGGA 1 cut(s) 1552
Van91I CCANNNNNTGG 1 cut(s) 1352
VpaK11BI GGWCC 1 cut(s) 1101
XhoI CTCGAG 2 cut(s) 594, 1001
XspI CTAG 3 cut(s) 605, 1440, 1722
ZrmI AGTACT 1 cut(s) 1560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.