Rw7G027650

Something about silencing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
36167719 .. 36174020
6302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G027650.1

Sequence Viewer

Length: 2010 bp
ATGGGTAAGAGAGGAAAGAGTAGTCAGAGAAAAGGCAATGAAAACCCTACTAAGACAAAGTTCCATGCCGTTGAAGACGACATGGATGATGAAGTCGATGCCTTTATGAAACAAAGAGATATTGTTCCCCTCGACCTTAATCAAGACGTTACAGATTCCGATGAAGATAACGAGCAAACAGTTTTCGATCTTCAGAATGTTAATGACGACGAGGAAGAGGAAGATGAAGACGACGATGACATCCCCGATACTGGAATGGCTGCAAAAATTGTTAGGCAGCAGAAGTTTATGAGGGCGAAGTTTGGCGGAGTTGAGGATGAAATGCTTGATGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAAAGCCGATATGGGGTGGAAGGAGACCTGGTTATCATGGTGGCGATAATCGTGATTTTGAGGAAAAATCAAGCGACGATGACTCTGCTGAAGAGGAAGCGAGAGAAGCGGAGAGGATTCGGAGAGAAAAGGCAAAGTCATCAACACGAGAAGACTTTGGGCTTGAGGATGATAGTGAAGATGAGAGTAATAGGGAATCGACTTTTGAGGAAATGTCAGTTCATGGAAAAAGTGAAAAAAGGTCTCGAGTGATACTAGAAGTAGCAGATGACATGGGTACAGCTTATGAGGAGGTCAAGAAAGATTTGAATGCTTTGTCAAAGGAGGAACAATTATCTGTTTTAAACAATACTGCACCGGAGCTGGTTGGTTTGCTGGCAGAGCTGAATGATGCACTTGAAGAGCTTGAAAACAGAGTTGATCCAATTTTAATCAAGGTTAGAAGGGGTGAGGTCATGATGGAAGGAGGAATGCGCTATTTAGAGGTGAAGCAGCTTCTTCTGCTGGCGTATTCCCAAGCAATAACGTTCTACCTTCTTCTCAAGTCTGAAGGCCAACAAGTTCGTGATCATCCTGTACTTGCTCGCCTTGTAGAGATCAAGAGTTTATTGGATAAGATGAAGCAACTGGATGAGAATCTTCCATCTGATCTCGAGGAAATCATAAACAAATATAATGGGATGGAAGCGGTGGTGAAATCGGTTAAAGAGAATGCTGCAAAACCATCGGATACTTTTGCTAAAGGATACAGGTCCCAACTTGTCTCACTTGAACCAAAAGAAGCAGCTGCGTTGCATAACACAGCCCAGATGGAAAAGGTGAAGTCTCTGAAGGATGATGCAAAAGTGGGAAAACGTAAACGTCAGAGTGATGAAGTTGGTTCACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAATTGAAGCAGAAGGGTGTTTTCAATTCCATCACTCCAAGAACTGATAGACCCCAGAAACATCTGAAGCCATTAAATGGGAAGCTTGAATCGTATGATGATTTTGATGATGACCCTGTAAATGCTGAAGGCGCTGACCAGGGTCGTGCAAGTTCATTGAGTGCTAGTAAAGTTTCCCAACTTGTTGCTGCTAATCGACATAAGTCAAAGATTGTTTCAGGCGATGATGACTTACCTCAGAGAGATGATATTGGGGAAAGACGGAGAAAACATGAGCTCCGAGTACTGGCAGGAGCTGGAATCAAGTCCGAGGATGATGCTGGAGAAAATGACACTATTTCAGATGATGGAGACATTGAGATGGAGGATAGTGAAGCTGGAGATTCAGAAGATGACTTTTACGAACAAGCAAAACAAAACCGAGCTGCAAAACTCGCTGCCAAAGCTGACATCCATTCTAGGTCCTCCTCAGTTCCATCTTTGCCTGAAACTGTGGATGGCAAACGTCATATTACTTATCAGATGGAGAAGAACAGAGGACTTACTCGTGCTCGAAAGAAGCTGATCAAGAATCCAAGAAAGAAATACAAGTTGAAGCATGAGAAGAAAATGAAGAATCGGAAAGGACAGGTACGGGAAGTCAAGAAGCCTATTGGTCCATACGGTGGGGAGACATCTGGAATCAATCCGAGAATCAGTCGGAGCACCAGATTTAAGAACTAA

Protein Analysis

669

Amino Acids

75.71

Weight (kDa)

5.01

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 246 - 326 4.2e-19 Sas10/Utp3/C1D family
Sas10 PF09368 595 - 667 2.7e-26 Sas10 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011442)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1364, 1952
AciI CCGC 3 cut(s) 306, 470, 1049
AclI AACGTT 1 cut(s) 887
AclWI GGATC 1 cut(s) 776
AcuI CTGAAG 6 cut(s) 176, 471, 930, 1211, 1373, 1434
AfaI GTAC 4 cut(s) 640, 939, 1572, 1920
AfiI CCNNNNNNNGG 5 cut(s) 251, 374, 1364, 1573, 1952
AjnI CCWGG 2 cut(s) 388, 1425
Alw21I GWGCWC 3 cut(s) 1566, 1840, 1994
Alw26I GTCTC 6 cut(s) 379, 609, 1129, 1191, 1632, 1952
AlwI GGATC 1 cut(s) 776
AlwNI CAGNNNCTG 1 cut(s) 1583
Ama87I CYCGRG 2 cut(s) 606, 1013
AoxI GGCC 1 cut(s) 913
AspLEI GCGC 2 cut(s) 837, 1421
AspS9I GGNCC 3 cut(s) 1113, 1749, 1943
AsuHPI GGTGA 4 cut(s) 821, 859, 1066, 1192
AvaI CYCGRG 2 cut(s) 606, 1013
AvaII GGWCC 3 cut(s) 1113, 1749, 1943
BanII GRGCYC 1 cut(s) 1566
BauI CACGAG 2 cut(s) 507, 1833
BbsI GAAGAC 3 cut(s) 81, 234, 519
Bbv12I GWGCWC 3 cut(s) 1566, 1840, 1994
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 6 cut(s) 428, 462, 1068, 1102, 1586, 1620
BciT130I CCWGG 2 cut(s) 390, 1427
BciVI GTATCC 2 cut(s) 1084, 1100
BclI TGATCA 2 cut(s) 928, 1851
BcoDI GTCTC 6 cut(s) 379, 609, 1129, 1191, 1632, 1952
BfaI CTAG 3 cut(s) 617, 1452, 1746
BfoI RGCGCY 1 cut(s) 1422
BfuI GTATCC 2 cut(s) 1084, 1100
BmcAI AGTACT 1 cut(s) 1572
Bme1390I CCNGG 2 cut(s) 390, 1427
Bme18I GGWCC 3 cut(s) 1113, 1749, 1943
BmeT110I CYCGRG 2 cut(s) 606, 1013
BmgT120I GGNCC 3 cut(s) 1113, 1749, 1943
BmiI GGNNCC 1 cut(s) 1115
BmrFI CCNGG 2 cut(s) 390, 1427
BmsI GCATC 4 cut(s) 88, 742, 1189, 1594
BoxI GACNNNNGTC 2 cut(s) 1428, 1489
BpiI GAAGAC 3 cut(s) 81, 234, 519
BpmI CTGGAG 2 cut(s) 1629, 1686
BpuEI CTTGAG 3 cut(s) 545, 887, 1301
BsaBI GATNNNNATC 1 cut(s) 996
BsaI GGTCTC 2 cut(s) 379, 609
BsaJI CCNNGG 2 cut(s) 1426, 1596
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 4 cut(s) 376, 406, 1548, 1578
Bsc4I CCNNNNNNNGG 5 cut(s) 251, 374, 1364, 1573, 1952
Bse1I ACTGG 3 cut(s) 256, 993, 1578
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 996
BseBI CCWGG 2 cut(s) 390, 1427
BseDI CCNNGG 2 cut(s) 1426, 1596
BseJI GATNNNNATC 1 cut(s) 996
BseLI CCNNNNNNNGG 5 cut(s) 251, 374, 1364, 1573, 1952
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 1538, 1770
BseNI ACTGG 3 cut(s) 256, 993, 1578
BseRI GAGGAG 2 cut(s) 665, 1744
BsgI GTGCAG 1 cut(s) 699
BshFI GGCC 1 cut(s) 915
BsiHKAI GWGCWC 3 cut(s) 1566, 1840, 1994
BsiHKCI CYCGRG 2 cut(s) 606, 1013
BsiSI CCGG 1 cut(s) 719
BslFI GGGAC 1 cut(s) 1099
BslI CCNNNNNNNGG 5 cut(s) 251, 374, 1364, 1573, 1952
BsmAI GTCTC 6 cut(s) 379, 609, 1129, 1191, 1632, 1952
BsmFI GGGAC 1 cut(s) 1099
BsmI GAATGC 3 cut(s) 676, 837, 1078
BsnI GGCC 1 cut(s) 915
Bso31I GGTCTC 2 cut(s) 379, 609
BsoBI CYCGRG 2 cut(s) 606, 1013
Bsp1286I GDGCHC 3 cut(s) 1566, 1840, 1994
Bsp143I GATC 6 cut(s) 187, 781, 928, 957, 1009, 1851
BspACI CCGC 3 cut(s) 306, 470, 1049
BspANI GGCC 1 cut(s) 915
BspCNI CTCAG 2 cut(s) 1537, 1769
BspHI TCATGA 1 cut(s) 816
BspLI GGNNCC 1 cut(s) 1115
BspPI GGATC 1 cut(s) 776
BspQI GCTCTTC 1 cut(s) 756
BspTNI GGTCTC 2 cut(s) 379, 609
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 3 cut(s) 256, 993, 1578
BssECI CCNNGG 2 cut(s) 1426, 1596
BssMI GATC 6 cut(s) 187, 781, 928, 957, 1009, 1851
BssSI CACGAG 2 cut(s) 507, 1833
Bst2BI CACGAG 2 cut(s) 507, 1833
Bst2UI CCWGG 2 cut(s) 390, 1427
Bst4CI ACNGT 3 cut(s) 181, 1780, 1952
Bst6I CTCTTC 4 cut(s) 210, 348, 447, 756
BstC8I GCNNGC 3 cut(s) 738, 867, 946
BstDEI CTNAG 3 cut(s) 51, 1524, 1756
BstH2I RGCGCY 1 cut(s) 1422
BstHHI GCGC 2 cut(s) 837, 1421
BstKTI GATC 6 cut(s) 190, 784, 931, 960, 1012, 1854
BstMAI GTCTC 6 cut(s) 379, 609, 1129, 1191, 1632, 1952
BstMBI GATC 6 cut(s) 187, 781, 928, 957, 1009, 1851
BstMWI GCNNNNNNNGC 6 cut(s) 467, 742, 862, 1418, 1721, 1730
BstNI CCWGG 2 cut(s) 390, 1427
BstPAI GACNNNNGTC 2 cut(s) 1428, 1489
BstSCI CCNGG 2 cut(s) 388, 1425
BstV2I GAAGAC 3 cut(s) 81, 234, 519
BsuI GTATCC 2 cut(s) 1084, 1100
BsuRI GGCC 1 cut(s) 915
BtgZI GCGATG 1 cut(s) 1524
Cac8I GCNNGC 3 cut(s) 738, 867, 946
CaiI CAGNNNCTG 1 cut(s) 1583
CciI TCATGA 1 cut(s) 816
CfoI GCGC 2 cut(s) 837, 1421
Cfr13I GGNCC 3 cut(s) 1113, 1749, 1943
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 4 cut(s) 639, 938, 1571, 1919
CviAII CATG 9 cut(s) 65, 82, 398, 584, 634, 817, 1252, 1559, 1886
CviQI GTAC 4 cut(s) 639, 938, 1571, 1919
DdeI CTNAG 3 cut(s) 51, 1524, 1756
DpnI GATC 6 cut(s) 189, 783, 930, 959, 1011, 1853
DpnII GATC 6 cut(s) 187, 781, 928, 957, 1009, 1851
DraI TTTAAA 1 cut(s) 705
Eam1104I CTCTTC 4 cut(s) 210, 348, 447, 756
EarI CTCTTC 4 cut(s) 210, 348, 447, 756
EciI GGCGGA 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 1564
Eco24I GRGCYC 1 cut(s) 1566
Eco31I GGTCTC 2 cut(s) 379, 609
Eco47I GGWCC 3 cut(s) 1113, 1749, 1943
Eco53kI GAGCTC 1 cut(s) 1564
Eco57I CTGAAG 6 cut(s) 176, 471, 930, 1211, 1373, 1434
Eco88I CYCGRG 2 cut(s) 606, 1013
EcoICRI GAGCTC 1 cut(s) 1564
EcoO109I RGGNCCY 2 cut(s) 1113, 1749
EcoRII CCWGG 2 cut(s) 388, 1425
EcoT38I GRGCYC 1 cut(s) 1566
FaeI CATG 9 cut(s) 68, 85, 401, 587, 637, 820, 1255, 1562, 1889
FaqI GGGAC 1 cut(s) 1099
FatI CATG 9 cut(s) 64, 81, 397, 583, 633, 816, 1251, 1558, 1885
FbaI TGATCA 2 cut(s) 928, 1851
FriOI GRGCYC 1 cut(s) 1566
FspBI CTAG 3 cut(s) 617, 1452, 1746
GlaI GCGC 2 cut(s) 836, 1420
GsuI CTGGAG 2 cut(s) 1629, 1686
HaeII RGCGCY 1 cut(s) 1422
HaeIII GGCC 1 cut(s) 915
HapII CCGG 1 cut(s) 719
HhaI GCGC 2 cut(s) 837, 1421
Hin1II CATG 9 cut(s) 68, 85, 401, 587, 637, 820, 1255, 1562, 1889
Hin6I GCGC 2 cut(s) 835, 1419
HinP1I GCGC 2 cut(s) 835, 1419
HindIII AAGCTT 1 cut(s) 1370
HpaII CCGG 1 cut(s) 719
HphI GGTGA 4 cut(s) 821, 859, 1066, 1192
Hpy166II GTNNAC 2 cut(s) 1220, 1244
Hpy8I GTNNAC 2 cut(s) 1220, 1244
Hpy99I CGWCG 3 cut(s) 212, 236, 440
HpyAV CCTTC 8 cut(s) 375, 798, 818, 905, 905, 1186, 1294, 1409
HpyCH4III ACNGT 3 cut(s) 181, 1780, 1952
HpyCH4IV ACGT 5 cut(s) 147, 887, 1216, 1222, 1792
HpyCH4V TGCA 8 cut(s) 263, 716, 755, 1079, 1156, 1202, 1436, 1715
HpyF10VI GCNNNNNNNGC 6 cut(s) 467, 742, 862, 1418, 1721, 1730
HpyF3I CTNAG 3 cut(s) 51, 1524, 1756
HpySE526I ACGT 5 cut(s) 147, 887, 1216, 1222, 1792
Hsp92II CATG 9 cut(s) 68, 85, 401, 587, 637, 820, 1255, 1562, 1889
HspAI GCGC 2 cut(s) 835, 1419
Ksp22I TGATCA 2 cut(s) 928, 1851
Kzo9I GATC 6 cut(s) 187, 781, 928, 957, 1009, 1851
LguI GCTCTTC 1 cut(s) 756
LmnI GCTCC 4 cut(s) 721, 1569, 1580, 1989
LweI GCATC 4 cut(s) 88, 742, 1189, 1594
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 3 cut(s) 617, 1452, 1746
MaeII ACGT 5 cut(s) 147, 887, 1216, 1222, 1792
MaeIII GTNAC 1 cut(s) 148
MalI GATC 6 cut(s) 189, 783, 930, 959, 1011, 1853
MboI GATC 6 cut(s) 187, 781, 928, 957, 1009, 1851
MhlI GDGCHC 3 cut(s) 1566, 1840, 1994
MluCI AATT 5 cut(s) 267, 692, 786, 1289, 1312
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 1967
MseI TTAA 7 cut(s) 138, 201, 704, 791, 1065, 1361, 2001
MslI CAYNNNNRTG 2 cut(s) 1256, 1646
MspA1I CMGCKG 1 cut(s) 1148
MspI CCGG 1 cut(s) 719
MspR9I CCNGG 2 cut(s) 390, 1427
Mva1269I GAATGC 3 cut(s) 676, 837, 1078
MvaI CCWGG 2 cut(s) 390, 1427
MwoI GCNNNNNNNGC 6 cut(s) 467, 742, 862, 1418, 1721, 1730
NdeII GATC 6 cut(s) 187, 781, 928, 957, 1009, 1851
NlaIII CATG 9 cut(s) 68, 85, 401, 587, 637, 820, 1255, 1562, 1889
NlaIV GGNNCC 1 cut(s) 1115
PaeR7I CTCGAG 2 cut(s) 606, 1013
PagI TCATGA 1 cut(s) 816
PciSI GCTCTTC 1 cut(s) 756
PctI GAATGC 3 cut(s) 676, 837, 1078
PflMI CCANNNNNTGG 2 cut(s) 1364, 1952
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PpuMI RGGWCCY 2 cut(s) 1113, 1749
PshAI GACNNNNGTC 2 cut(s) 1428, 1489
Psp124BI GAGCTC 1 cut(s) 1566
Psp1406I AACGTT 1 cut(s) 887
Psp5II RGGWCCY 2 cut(s) 1113, 1749
Psp6I CCWGG 2 cut(s) 388, 1425
PspGI CCWGG 2 cut(s) 388, 1425
PspN4I GGNNCC 1 cut(s) 1115
PspPI GGNCC 3 cut(s) 1113, 1749, 1943
PspPPI RGGWCCY 2 cut(s) 1113, 1749
PstNI CAGNNNCTG 1 cut(s) 1583
PvuII CAGCTG 1 cut(s) 1148
RsaI GTAC 4 cut(s) 640, 939, 1572, 1920
RsaNI GTAC 4 cut(s) 639, 938, 1571, 1919
RseI CAYNNNNRTG 2 cut(s) 1256, 1646
SacI GAGCTC 1 cut(s) 1566
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 7 cut(s) 138, 201, 704, 791, 1065, 1361, 2001
Sau3AI GATC 6 cut(s) 187, 781, 928, 957, 1009, 1851
Sau96I GGNCC 3 cut(s) 1113, 1749, 1943
ScaI AGTACT 1 cut(s) 1572
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 2 cut(s) 390, 1427
SduI GDGCHC 3 cut(s) 1566, 1840, 1994
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 4 cut(s) 88, 742, 1189, 1594
Sfr274I CTCGAG 2 cut(s) 606, 1013
SinI GGWCC 3 cut(s) 1113, 1749, 1943
SlaI CTCGAG 2 cut(s) 606, 1013
SmiMI CAYNNNNRTG 2 cut(s) 1256, 1646
SmlI CTYRAG 5 cut(s) 524, 606, 902, 1013, 1280
SmoI CTYRAG 5 cut(s) 524, 606, 902, 1013, 1280
Sse9I AATT 5 cut(s) 267, 692, 786, 1289, 1312
SsiI CCGC 3 cut(s) 306, 470, 1049
SspMI CTAG 3 cut(s) 617, 1452, 1746
SstI GAGCTC 1 cut(s) 1566
StyD4I CCNGG 2 cut(s) 388, 1425
TaaI ACNGT 3 cut(s) 181, 1780, 1952
TaiI ACGT 5 cut(s) 150, 890, 1219, 1225, 1795
TaqI TCGA 8 cut(s) 96, 132, 186, 560, 607, 1014, 1483, 1840
TasI AATT 5 cut(s) 267, 692, 786, 1289, 1312
TatI WGTACW 2 cut(s) 937, 1570
Tru1I TTAA 7 cut(s) 138, 201, 704, 791, 1065, 1361, 2001
Tru9I TTAA 7 cut(s) 138, 201, 704, 791, 1065, 1361, 2001
TspGWI ACGGA 1 cut(s) 1564
Van91I CCANNNNNTGG 2 cut(s) 1364, 1952
VpaK11BI GGWCC 3 cut(s) 1113, 1749, 1943
XhoI CTCGAG 2 cut(s) 606, 1013
XspI CTAG 3 cut(s) 617, 1452, 1746
ZrmI AGTACT 1 cut(s) 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.