Something about silencing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G43650 |
| fragaria_vesca | FvH4_5g27692 FvH4_5g27692 FvH4_5g27692 |
| malus_domestica | MD04G1048900.v1.1 MD17G1177700.v1.1 |
| prunus_persica | Prupe.1G206800_v2.0.a1 |
| pyrus_communis | pycom04g04300 |
| rosa_chinensis | RchiOBHm_Chr7g0219421 |
| rosa_laevigata | RLG00000002290 |
| rosa_multiflora | Rmu_sc0002460.1_g000021 Rmu_sc0003767.1_g000014 |
| rosa_roxburghii | Rroxscaffold_3G00240050 |
| rosa_rugosa | Rorug07G0184900 |
| rosa_samantha | Rh7AG327800 Rh7BG317800 Rh7CG345200 Rh7DG323200 |
| rosa_wichuraiana | Rw7G027650 Rw7G027690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1364, 1952 |
| AciI | CCGC | 3 cut(s) | 306, 470, 1049 |
| AclI | AACGTT | 1 cut(s) | 887 |
| AclWI | GGATC | 1 cut(s) | 776 |
| AcuI | CTGAAG | 6 cut(s) | 176, 471, 930, 1211, 1373, 1434 |
| AfaI | GTAC | 4 cut(s) | 640, 939, 1572, 1920 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 251, 374, 1364, 1573, 1952 |
| AjnI | CCWGG | 2 cut(s) | 388, 1425 |
| Alw21I | GWGCWC | 3 cut(s) | 1566, 1840, 1994 |
| Alw26I | GTCTC | 6 cut(s) | 379, 609, 1129, 1191, 1632, 1952 |
| AlwI | GGATC | 1 cut(s) | 776 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1583 |
| Ama87I | CYCGRG | 2 cut(s) | 606, 1013 |
| AoxI | GGCC | 1 cut(s) | 913 |
| AspLEI | GCGC | 2 cut(s) | 837, 1421 |
| AspS9I | GGNCC | 3 cut(s) | 1113, 1749, 1943 |
| AsuHPI | GGTGA | 4 cut(s) | 821, 859, 1066, 1192 |
| AvaI | CYCGRG | 2 cut(s) | 606, 1013 |
| AvaII | GGWCC | 3 cut(s) | 1113, 1749, 1943 |
| BanII | GRGCYC | 1 cut(s) | 1566 |
| BauI | CACGAG | 2 cut(s) | 507, 1833 |
| BbsI | GAAGAC | 3 cut(s) | 81, 234, 519 |
| Bbv12I | GWGCWC | 3 cut(s) | 1566, 1840, 1994 |
| BceAI | ACGGC | 1 cut(s) | 53 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 428, 462, 1068, 1102, 1586, 1620 |
| BciT130I | CCWGG | 2 cut(s) | 390, 1427 |
| BciVI | GTATCC | 2 cut(s) | 1084, 1100 |
| BclI | TGATCA | 2 cut(s) | 928, 1851 |
| BcoDI | GTCTC | 6 cut(s) | 379, 609, 1129, 1191, 1632, 1952 |
| BfaI | CTAG | 3 cut(s) | 617, 1452, 1746 |
| BfoI | RGCGCY | 1 cut(s) | 1422 |
| BfuI | GTATCC | 2 cut(s) | 1084, 1100 |
| BmcAI | AGTACT | 1 cut(s) | 1572 |
| Bme1390I | CCNGG | 2 cut(s) | 390, 1427 |
| Bme18I | GGWCC | 3 cut(s) | 1113, 1749, 1943 |
| BmeT110I | CYCGRG | 2 cut(s) | 606, 1013 |
| BmgT120I | GGNCC | 3 cut(s) | 1113, 1749, 1943 |
| BmiI | GGNNCC | 1 cut(s) | 1115 |
| BmrFI | CCNGG | 2 cut(s) | 390, 1427 |
| BmsI | GCATC | 4 cut(s) | 88, 742, 1189, 1594 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1428, 1489 |
| BpiI | GAAGAC | 3 cut(s) | 81, 234, 519 |
| BpmI | CTGGAG | 2 cut(s) | 1629, 1686 |
| BpuEI | CTTGAG | 3 cut(s) | 545, 887, 1301 |
| BsaBI | GATNNNNATC | 1 cut(s) | 996 |
| BsaI | GGTCTC | 2 cut(s) | 379, 609 |
| BsaJI | CCNNGG | 2 cut(s) | 1426, 1596 |
| BsaWI | WCCGGW | 1 cut(s) | 718 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 376, 406, 1548, 1578 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 251, 374, 1364, 1573, 1952 |
| Bse1I | ACTGG | 3 cut(s) | 256, 993, 1578 |
| Bse3DI | GCAATG | 1 cut(s) | 43 |
| Bse8I | GATNNNNATC | 1 cut(s) | 996 |
| BseBI | CCWGG | 2 cut(s) | 390, 1427 |
| BseDI | CCNNGG | 2 cut(s) | 1426, 1596 |
| BseJI | GATNNNNATC | 1 cut(s) | 996 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 251, 374, 1364, 1573, 1952 |
| BseMI | GCAATG | 1 cut(s) | 43 |
| BseMII | CTCAG | 2 cut(s) | 1538, 1770 |
| BseNI | ACTGG | 3 cut(s) | 256, 993, 1578 |
| BseRI | GAGGAG | 2 cut(s) | 665, 1744 |
| BsgI | GTGCAG | 1 cut(s) | 699 |
| BshFI | GGCC | 1 cut(s) | 915 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1566, 1840, 1994 |
| BsiHKCI | CYCGRG | 2 cut(s) | 606, 1013 |
| BsiSI | CCGG | 1 cut(s) | 719 |
| BslFI | GGGAC | 1 cut(s) | 1099 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 251, 374, 1364, 1573, 1952 |
| BsmAI | GTCTC | 6 cut(s) | 379, 609, 1129, 1191, 1632, 1952 |
| BsmFI | GGGAC | 1 cut(s) | 1099 |
| BsmI | GAATGC | 3 cut(s) | 676, 837, 1078 |
| BsnI | GGCC | 1 cut(s) | 915 |
| Bso31I | GGTCTC | 2 cut(s) | 379, 609 |
| BsoBI | CYCGRG | 2 cut(s) | 606, 1013 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1566, 1840, 1994 |
| Bsp143I | GATC | 6 cut(s) | 187, 781, 928, 957, 1009, 1851 |
| BspACI | CCGC | 3 cut(s) | 306, 470, 1049 |
| BspANI | GGCC | 1 cut(s) | 915 |
| BspCNI | CTCAG | 2 cut(s) | 1537, 1769 |
| BspHI | TCATGA | 1 cut(s) | 816 |
| BspLI | GGNNCC | 1 cut(s) | 1115 |
| BspPI | GGATC | 1 cut(s) | 776 |
| BspQI | GCTCTTC | 1 cut(s) | 756 |
| BspTNI | GGTCTC | 2 cut(s) | 379, 609 |
| BsrDI | GCAATG | 1 cut(s) | 43 |
| BsrI | ACTGG | 3 cut(s) | 256, 993, 1578 |
| BssECI | CCNNGG | 2 cut(s) | 1426, 1596 |
| BssMI | GATC | 6 cut(s) | 187, 781, 928, 957, 1009, 1851 |
| BssSI | CACGAG | 2 cut(s) | 507, 1833 |
| Bst2BI | CACGAG | 2 cut(s) | 507, 1833 |
| Bst2UI | CCWGG | 2 cut(s) | 390, 1427 |
| Bst4CI | ACNGT | 3 cut(s) | 181, 1780, 1952 |
| Bst6I | CTCTTC | 4 cut(s) | 210, 348, 447, 756 |
| BstC8I | GCNNGC | 3 cut(s) | 738, 867, 946 |
| BstDEI | CTNAG | 3 cut(s) | 51, 1524, 1756 |
| BstH2I | RGCGCY | 1 cut(s) | 1422 |
| BstHHI | GCGC | 2 cut(s) | 837, 1421 |
| BstKTI | GATC | 6 cut(s) | 190, 784, 931, 960, 1012, 1854 |
| BstMAI | GTCTC | 6 cut(s) | 379, 609, 1129, 1191, 1632, 1952 |
| BstMBI | GATC | 6 cut(s) | 187, 781, 928, 957, 1009, 1851 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 467, 742, 862, 1418, 1721, 1730 |
| BstNI | CCWGG | 2 cut(s) | 390, 1427 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1428, 1489 |
| BstSCI | CCNGG | 2 cut(s) | 388, 1425 |
| BstV2I | GAAGAC | 3 cut(s) | 81, 234, 519 |
| BsuI | GTATCC | 2 cut(s) | 1084, 1100 |
| BsuRI | GGCC | 1 cut(s) | 915 |
| BtgZI | GCGATG | 1 cut(s) | 1524 |
| Cac8I | GCNNGC | 3 cut(s) | 738, 867, 946 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1583 |
| CciI | TCATGA | 1 cut(s) | 816 |
| CfoI | GCGC | 2 cut(s) | 837, 1421 |
| Cfr13I | GGNCC | 3 cut(s) | 1113, 1749, 1943 |
| CsiI | ACCWGGT | 1 cut(s) | 388 |
| Csp6I | GTAC | 4 cut(s) | 639, 938, 1571, 1919 |
| CviAII | CATG | 9 cut(s) | 65, 82, 398, 584, 634, 817, 1252, 1559, 1886 |
| CviQI | GTAC | 4 cut(s) | 639, 938, 1571, 1919 |
| DdeI | CTNAG | 3 cut(s) | 51, 1524, 1756 |
| DpnI | GATC | 6 cut(s) | 189, 783, 930, 959, 1011, 1853 |
| DpnII | GATC | 6 cut(s) | 187, 781, 928, 957, 1009, 1851 |
| DraI | TTTAAA | 1 cut(s) | 705 |
| Eam1104I | CTCTTC | 4 cut(s) | 210, 348, 447, 756 |
| EarI | CTCTTC | 4 cut(s) | 210, 348, 447, 756 |
| EciI | GGCGGA | 1 cut(s) | 321 |
| Ecl136II | GAGCTC | 1 cut(s) | 1564 |
| Eco24I | GRGCYC | 1 cut(s) | 1566 |
| Eco31I | GGTCTC | 2 cut(s) | 379, 609 |
| Eco47I | GGWCC | 3 cut(s) | 1113, 1749, 1943 |
| Eco53kI | GAGCTC | 1 cut(s) | 1564 |
| Eco57I | CTGAAG | 6 cut(s) | 176, 471, 930, 1211, 1373, 1434 |
| Eco88I | CYCGRG | 2 cut(s) | 606, 1013 |
| EcoICRI | GAGCTC | 1 cut(s) | 1564 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1113, 1749 |
| EcoRII | CCWGG | 2 cut(s) | 388, 1425 |
| EcoT38I | GRGCYC | 1 cut(s) | 1566 |
| FaeI | CATG | 9 cut(s) | 68, 85, 401, 587, 637, 820, 1255, 1562, 1889 |
| FaqI | GGGAC | 1 cut(s) | 1099 |
| FatI | CATG | 9 cut(s) | 64, 81, 397, 583, 633, 816, 1251, 1558, 1885 |
| FbaI | TGATCA | 2 cut(s) | 928, 1851 |
| FriOI | GRGCYC | 1 cut(s) | 1566 |
| FspBI | CTAG | 3 cut(s) | 617, 1452, 1746 |
| GlaI | GCGC | 2 cut(s) | 836, 1420 |
| GsuI | CTGGAG | 2 cut(s) | 1629, 1686 |
| HaeII | RGCGCY | 1 cut(s) | 1422 |
| HaeIII | GGCC | 1 cut(s) | 915 |
| HapII | CCGG | 1 cut(s) | 719 |
| HhaI | GCGC | 2 cut(s) | 837, 1421 |
| Hin1II | CATG | 9 cut(s) | 68, 85, 401, 587, 637, 820, 1255, 1562, 1889 |
| Hin6I | GCGC | 2 cut(s) | 835, 1419 |
| HinP1I | GCGC | 2 cut(s) | 835, 1419 |
| HindIII | AAGCTT | 1 cut(s) | 1370 |
| HpaII | CCGG | 1 cut(s) | 719 |
| HphI | GGTGA | 4 cut(s) | 821, 859, 1066, 1192 |
| Hpy166II | GTNNAC | 2 cut(s) | 1220, 1244 |
| Hpy8I | GTNNAC | 2 cut(s) | 1220, 1244 |
| Hpy99I | CGWCG | 3 cut(s) | 212, 236, 440 |
| HpyAV | CCTTC | 8 cut(s) | 375, 798, 818, 905, 905, 1186, 1294, 1409 |
| HpyCH4III | ACNGT | 3 cut(s) | 181, 1780, 1952 |
| HpyCH4IV | ACGT | 5 cut(s) | 147, 887, 1216, 1222, 1792 |
| HpyCH4V | TGCA | 8 cut(s) | 263, 716, 755, 1079, 1156, 1202, 1436, 1715 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 467, 742, 862, 1418, 1721, 1730 |
| HpyF3I | CTNAG | 3 cut(s) | 51, 1524, 1756 |
| HpySE526I | ACGT | 5 cut(s) | 147, 887, 1216, 1222, 1792 |
| Hsp92II | CATG | 9 cut(s) | 68, 85, 401, 587, 637, 820, 1255, 1562, 1889 |
| HspAI | GCGC | 2 cut(s) | 835, 1419 |
| Ksp22I | TGATCA | 2 cut(s) | 928, 1851 |
| Kzo9I | GATC | 6 cut(s) | 187, 781, 928, 957, 1009, 1851 |
| LguI | GCTCTTC | 1 cut(s) | 756 |
| LmnI | GCTCC | 4 cut(s) | 721, 1569, 1580, 1989 |
| LweI | GCATC | 4 cut(s) | 88, 742, 1189, 1594 |
| MabI | ACCWGGT | 1 cut(s) | 388 |
| MaeI | CTAG | 3 cut(s) | 617, 1452, 1746 |
| MaeII | ACGT | 5 cut(s) | 147, 887, 1216, 1222, 1792 |
| MaeIII | GTNAC | 1 cut(s) | 148 |
| MalI | GATC | 6 cut(s) | 189, 783, 930, 959, 1011, 1853 |
| MboI | GATC | 6 cut(s) | 187, 781, 928, 957, 1009, 1851 |
| MhlI | GDGCHC | 3 cut(s) | 1566, 1840, 1994 |
| MluCI | AATT | 5 cut(s) | 267, 692, 786, 1289, 1312 |
| MlyI | GAGTC | 1 cut(s) | 437 |
| MmeI | TCCRAC | 1 cut(s) | 1967 |
| MseI | TTAA | 7 cut(s) | 138, 201, 704, 791, 1065, 1361, 2001 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1256, 1646 |
| MspA1I | CMGCKG | 1 cut(s) | 1148 |
| MspI | CCGG | 1 cut(s) | 719 |
| MspR9I | CCNGG | 2 cut(s) | 390, 1427 |
| Mva1269I | GAATGC | 3 cut(s) | 676, 837, 1078 |
| MvaI | CCWGG | 2 cut(s) | 390, 1427 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 467, 742, 862, 1418, 1721, 1730 |
| NdeII | GATC | 6 cut(s) | 187, 781, 928, 957, 1009, 1851 |
| NlaIII | CATG | 9 cut(s) | 68, 85, 401, 587, 637, 820, 1255, 1562, 1889 |
| NlaIV | GGNNCC | 1 cut(s) | 1115 |
| PaeR7I | CTCGAG | 2 cut(s) | 606, 1013 |
| PagI | TCATGA | 1 cut(s) | 816 |
| PciSI | GCTCTTC | 1 cut(s) | 756 |
| PctI | GAATGC | 3 cut(s) | 676, 837, 1078 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1364, 1952 |
| PleI | GAGTC | 1 cut(s) | 437 |
| PpsI | GAGTC | 1 cut(s) | 437 |
| PpuMI | RGGWCCY | 2 cut(s) | 1113, 1749 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1428, 1489 |
| Psp124BI | GAGCTC | 1 cut(s) | 1566 |
| Psp1406I | AACGTT | 1 cut(s) | 887 |
| Psp5II | RGGWCCY | 2 cut(s) | 1113, 1749 |
| Psp6I | CCWGG | 2 cut(s) | 388, 1425 |
| PspGI | CCWGG | 2 cut(s) | 388, 1425 |
| PspN4I | GGNNCC | 1 cut(s) | 1115 |
| PspPI | GGNCC | 3 cut(s) | 1113, 1749, 1943 |
| PspPPI | RGGWCCY | 2 cut(s) | 1113, 1749 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1583 |
| PvuII | CAGCTG | 1 cut(s) | 1148 |
| RsaI | GTAC | 4 cut(s) | 640, 939, 1572, 1920 |
| RsaNI | GTAC | 4 cut(s) | 639, 938, 1571, 1919 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1256, 1646 |
| SacI | GAGCTC | 1 cut(s) | 1566 |
| SapI | GCTCTTC | 1 cut(s) | 756 |
| SaqAI | TTAA | 7 cut(s) | 138, 201, 704, 791, 1065, 1361, 2001 |
| Sau3AI | GATC | 6 cut(s) | 187, 781, 928, 957, 1009, 1851 |
| Sau96I | GGNCC | 3 cut(s) | 1113, 1749, 1943 |
| ScaI | AGTACT | 1 cut(s) | 1572 |
| SchI | GAGTC | 1 cut(s) | 437 |
| ScrFI | CCNGG | 2 cut(s) | 390, 1427 |
| SduI | GDGCHC | 3 cut(s) | 1566, 1840, 1994 |
| SexAI | ACCWGGT | 1 cut(s) | 388 |
| SfaNI | GCATC | 4 cut(s) | 88, 742, 1189, 1594 |
| Sfr274I | CTCGAG | 2 cut(s) | 606, 1013 |
| SinI | GGWCC | 3 cut(s) | 1113, 1749, 1943 |
| SlaI | CTCGAG | 2 cut(s) | 606, 1013 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1256, 1646 |
| SmlI | CTYRAG | 5 cut(s) | 524, 606, 902, 1013, 1280 |
| SmoI | CTYRAG | 5 cut(s) | 524, 606, 902, 1013, 1280 |
| Sse9I | AATT | 5 cut(s) | 267, 692, 786, 1289, 1312 |
| SsiI | CCGC | 3 cut(s) | 306, 470, 1049 |
| SspMI | CTAG | 3 cut(s) | 617, 1452, 1746 |
| SstI | GAGCTC | 1 cut(s) | 1566 |
| StyD4I | CCNGG | 2 cut(s) | 388, 1425 |
| TaaI | ACNGT | 3 cut(s) | 181, 1780, 1952 |
| TaiI | ACGT | 5 cut(s) | 150, 890, 1219, 1225, 1795 |
| TaqI | TCGA | 8 cut(s) | 96, 132, 186, 560, 607, 1014, 1483, 1840 |
| TasI | AATT | 5 cut(s) | 267, 692, 786, 1289, 1312 |
| TatI | WGTACW | 2 cut(s) | 937, 1570 |
| Tru1I | TTAA | 7 cut(s) | 138, 201, 704, 791, 1065, 1361, 2001 |
| Tru9I | TTAA | 7 cut(s) | 138, 201, 704, 791, 1065, 1361, 2001 |
| TspGWI | ACGGA | 1 cut(s) | 1564 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1364, 1952 |
| VpaK11BI | GGWCC | 3 cut(s) | 1113, 1749, 1943 |
| XhoI | CTCGAG | 2 cut(s) | 606, 1013 |
| XspI | CTAG | 3 cut(s) | 617, 1452, 1746 |
| ZrmI | AGTACT | 1 cut(s) | 1572 |