Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011442

Physical Location & Seq

Genomic Coordinates Forward (+)

3845332 .. 3849514

Gene Structure 4183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04300.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCATGATGATGAAGAAAACGAGGAAGAAGAAAAACCTGTATGGGGTGGAAAGAAGCAAAACTATTATGGTGTTGATAATGGTGATTTTGAGCAAAAATCAAGTGACGATGAATCTGTTGAAGAGGAAGAATCAGAAGTGGTGAGGCTGCAGAAAGAAAGGGCAAAATTTTCAACGCTGGATGACTATGGGCTTGACGATATTTGGGAAAATGAGAATGATGAGGAATTAACTTTTGAGGAAATTTCAATGAAGGGAAACAGTACAAAAAGGTTTCCAGTGGGAATCGATCTTGCAGATGGCACGGGTACAGCTTATGAGGAGGTGAAGAAAGATTTGAGTGCCTGGTCAAAAGCGGAGCAAATGGATGTTTTATATTATTCCGCACCTGAATTAGTTGGGTTGTTGTTAGAGCTGAATGATGCACATGAAGAGCTTGAAAGAAAAGTGAATCCACTTCTGGGCAAGGTTAAAAAAGGGGAGGTCATGTTGGAAGGAGGGATGCGCTATTTAGAGGTTAAGGAGCTTCTTCTGCTTTCCTACTGCCAAGCAATAACATTCTACATTCTTCTCAAGTCTGAAGGACAACCAGTTCGTGACCATCCAGTACTTGCTTGCCTAATAGAGATCAAGATTTTGTTGAATAAGATGAAGCAACTTGATGGCAATCTACCATCTCATTTTGAGGAAATTTTAAACAAATATAATTGGGTGGCAGCAGTGGCAAAGTCGGTGCATGACATTGCTAAGGTAGAAATACCGGAGTCTCTGAAGGATAATGAAAACCAGAATGATGAAGTTGATGTACAGAGCATGAAAATGTTGAAAGTAAGAGCTGCCCTTGAGGAAAAGTTGAAGCAGAAAGGTGTCTTCAGTTCCATCACTCCGAAAATTGATAAACCCAGGAAACTTCTGAAGCCATTGAATGGGAAGCTTGAATCATATGATGATTTTAATGATGACACTGTAAATATTGAGGGTGCCATCCATGGATTGAACAACGGTCGTGCAAGTCGAAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0030490 GO:0030684 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sas10 Sas10_Utp3

Protein Analysis

342

Amino Acids

38.92

Weight (kDa)

4.72

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43650
fragaria_vesca	FvH4_5g27692 FvH4_5g27692 FvH4_5g27692
malus_domestica	MD04G1048900.v1.1 MD17G1177700.v1.1
prunus_persica	Prupe.1G206800_v2.0.a1
pyrus_communis	pycom04g04300
rosa_chinensis	RchiOBHm_Chr7g0219421
rosa_laevigata	RLG00000002290
rosa_multiflora	Rmu_sc0002460.1_g000021 Rmu_sc0003767.1_g000014
rosa_roxburghii	Rroxscaffold_3G00240050
rosa_rugosa	Rorug07G0184900
rosa_samantha	Rh7AG327800 Rh7BG317800 Rh7CG345200 Rh7DG323200
rosa_wichuraiana	Rw7G027650 Rw7G027690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	980
AccB7I	CCANNNNNTGG	1 cut(s)	926
AciI	CCGC	2 cut(s)	356, 384
AcsI	RAATTY	3 cut(s)	167, 243, 690
AcuI	CTGAAG	4 cut(s)	600, 791, 856, 935
AfaI	GTAC	4 cut(s)	265, 310, 609, 807
AfiI	CCNNNNNNNGG	3 cut(s)	44, 461, 926
AjnI	CCWGG	2 cut(s)	344, 902
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	6 cut(s)	314, 415, 436, 526, 836, 934
AluI	AGCT	6 cut(s)	314, 415, 436, 526, 836, 934
Alw26I	GTCTC	1 cut(s)	771
ApeKI	GCWGC	3 cut(s)	148, 716, 836
ApoI	RAATTY	3 cut(s)	167, 243, 690
ArsI	GACNNNNNNTTYG	2 cut(s)	576, 608
AspLEI	GCGC	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	95, 154, 337
BanI	GGYRCC	1 cut(s)	980
BarI	GAAGNNNNNNTAC	2 cut(s)	789, 821
BbsI	GAAGAC	1 cut(s)	862
BbvI	GCAGC	3 cut(s)	135, 728, 823
BccI	CCATC	6 cut(s)	293, 609, 656, 682, 887, 992
BciT130I	CCWGG	2 cut(s)	346, 904
BcoDI	GTCTC	1 cut(s)	771
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	149, 717, 837
BlsI	GCNGC	3 cut(s)	150, 718, 838
BmcAI	AGTACT	1 cut(s)	609
Bme1390I	CCNGG	2 cut(s)	346, 904
BmiI	GGNNCC	1 cut(s)	982
BmrFI	CCNGG	2 cut(s)	346, 904
BmsI	GCATC	2 cut(s)	412, 492
BpiI	GAAGAC	1 cut(s)	862
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	557, 863
Bsa29I	ATCGAT	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	666
BsaJI	CCNNGG	2 cut(s)	902, 988
BsaWI	WCCGGW	1 cut(s)	760
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 461, 926
Bse1I	ACTGG	3 cut(s)	278, 590, 605
Bse3DI	GCAATG	1 cut(s)	741
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	346, 904
BseCI	ATCGAT	1 cut(s)	288
BseDI	CCNNGG	2 cut(s)	902, 988
BseGI	GGATG	5 cut(s)	187, 373, 507, 601, 984
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	3 cut(s)	44, 461, 926
BseMI	GCAATG	1 cut(s)	741
BseNI	ACTGG	3 cut(s)	278, 590, 605
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	3 cut(s)	135, 728, 823
Bsh1285I	CGRYCG	1 cut(s)	1006
BshNI	GGYRCC	1 cut(s)	980
BshVI	ATCGAT	1 cut(s)	288
BsiEI	CGRYCG	1 cut(s)	1006
BsiSI	CCGG	1 cut(s)	761
BslI	CCNNNNNNNGG	3 cut(s)	44, 461, 926
BsmAI	GTCTC	1 cut(s)	771
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	2 cut(s)	289, 627
Bsp19I	CCATGG	1 cut(s)	988
BspACI	CCGC	2 cut(s)	356, 384
BspDI	ATCGAT	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	982
BspMAI	CTGCAG	1 cut(s)	153
BspQI	GCTCTTC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	980
BsrDI	GCAATG	1 cut(s)	741
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	3 cut(s)	278, 590, 605
BssECI	CCNNGG	2 cut(s)	902, 988
BssMI	GATC	2 cut(s)	289, 627
BssT1I	CCWWGG	1 cut(s)	988
Bst2UI	CCWGG	2 cut(s)	346, 904
Bst4CI	ACNGT	3 cut(s)	263, 967, 1004
Bst6I	CTCTTC	2 cut(s)	117, 426
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	1 cut(s)	747
BstDSI	CCRYGG	1 cut(s)	988
BstF5I	GGATG	5 cut(s)	187, 373, 507, 601, 984
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	2 cut(s)	292, 630
BstMAI	GTCTC	1 cut(s)	771
BstMBI	GATC	2 cut(s)	289, 627
BstMCI	CGRYCG	1 cut(s)	1006
BstMWI	GCNNNNNNNGC	2 cut(s)	532, 722
BstNI	CCWGG	2 cut(s)	346, 904
BstSCI	CCNGG	2 cut(s)	344, 902
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	135, 728, 823
BstV2I	GAAGAC	1 cut(s)	862
Bsu15I	ATCGAT	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	988
BtsCI	GGATG	5 cut(s)	187, 373, 507, 601, 984
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	3 cut(s)	285, 726, 963
Cac8I	GCNNGC	1 cut(s)	616
CfoI	GCGC	1 cut(s)	507
ClaI	ATCGAT	1 cut(s)	288
Csp6I	GTAC	4 cut(s)	264, 309, 608, 806
CviAII	CATG	6 cut(s)	5, 428, 487, 737, 814, 989
CviJI	RGCY	9 cut(s)	148, 193, 314, 415, 436, 526, 836, 919, 934
CviKI_1	RGCY	9 cut(s)	148, 193, 314, 415, 436, 526, 836, 919, 934
CviQI	GTAC	4 cut(s)	264, 309, 608, 806
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	2 cut(s)	291, 629
DpnII	GATC	2 cut(s)	289, 627
DraI	TTTAAA	1 cut(s)	696
Eam1104I	CTCTTC	2 cut(s)	117, 426
EarI	CTCTTC	2 cut(s)	117, 426
Eco130I	CCWWGG	1 cut(s)	988
Eco57I	CTGAAG	4 cut(s)	600, 791, 856, 935
EcoRII	CCWGG	2 cut(s)	344, 902
EcoT14I	CCWWGG	1 cut(s)	988
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	988
FaeI	CATG	6 cut(s)	8, 431, 490, 740, 817, 992
FatI	CATG	6 cut(s)	4, 427, 486, 736, 813, 988
FauNDI	CATATG	1 cut(s)	943
Fnu4HI	GCNGC	3 cut(s)	149, 717, 837
FokI	GGATG	5 cut(s)	194, 380, 514, 588, 971
Fsp4HI	GCNGC	3 cut(s)	149, 717, 837
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	3 cut(s)	149, 717, 837
HapII	CCGG	1 cut(s)	761
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	6 cut(s)	8, 431, 490, 740, 817, 992
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	932
HinfI	GANTC	6 cut(s)	113, 131, 285, 451, 764, 938
HpaII	CCGG	1 cut(s)	761
HphI	GGTGA	3 cut(s)	95, 154, 337
Hpy188I	TCNGA	5 cut(s)	136, 580, 771, 888, 915
Hpy188III	TCNNGA	2 cut(s)	596, 631
HpyAV	CCTTC	5 cut(s)	247, 488, 575, 766, 1011
HpyCH4III	ACNGT	3 cut(s)	263, 967, 1004
HpyCH4V	TGCA	6 cut(s)	4, 151, 296, 425, 736, 1010
HpyF10VI	GCNNNNNNNGC	2 cut(s)	532, 722
HpyF3I	CTNAG	1 cut(s)	747
Hsp92II	CATG	6 cut(s)	8, 431, 490, 740, 817, 992
HspAI	GCGC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	289, 627
LguI	GCTCTTC	1 cut(s)	426
LmnI	GCTCC	2 cut(s)	358, 523
Lsp1109I	GCAGC	3 cut(s)	135, 728, 823
LweI	GCATC	2 cut(s)	412, 492
MaeIII	GTNAC	2 cut(s)	104, 596
MalI	GATC	2 cut(s)	291, 629
MboI	GATC	2 cut(s)	289, 627
MluCI	AATT	7 cut(s)	167, 227, 243, 392, 690, 706, 891
MlyI	GAGTC	1 cut(s)	773
MmeI	TCCRAC	1 cut(s)	471
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	230, 471, 519, 695, 954
MslI	CAYNNNNRTG	2 cut(s)	9, 818
MspI	CCGG	1 cut(s)	761
MspR9I	CCNGG	2 cut(s)	346, 904
MvaI	CCWGG	2 cut(s)	346, 904
MwoI	GCNNNNNNNGC	2 cut(s)	532, 722
NcoI	CCATGG	1 cut(s)	988
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	2 cut(s)	289, 627
NlaIII	CATG	6 cut(s)	8, 431, 490, 740, 817, 992
NlaIV	GGNNCC	1 cut(s)	982
NmuCI	GTSAC	2 cut(s)	104, 596
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	1012
PfeI	GAWTC	5 cut(s)	113, 131, 285, 451, 938
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	3 cut(s)	150, 718, 838
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
Psp6I	CCWGG	2 cut(s)	344, 902
PspGI	CCWGG	2 cut(s)	344, 902
PspN4I	GGNNCC	1 cut(s)	982
PstI	CTGCAG	1 cut(s)	153
RsaI	GTAC	4 cut(s)	265, 310, 609, 807
RsaNI	GTAC	4 cut(s)	264, 309, 608, 806
RseI	CAYNNNNRTG	2 cut(s)	9, 818
SapI	GCTCTTC	1 cut(s)	426
SaqAI	TTAA	5 cut(s)	230, 471, 519, 695, 954
SatI	GCNGC	3 cut(s)	149, 717, 837
Sau3AI	GATC	2 cut(s)	289, 627
ScaI	AGTACT	1 cut(s)	609
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	346, 904
SfaNI	GCATC	2 cut(s)	412, 492
SfcI	CTRYAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	2 cut(s)	9, 818
SmlI	CTYRAG	2 cut(s)	572, 842
SmoI	CTYRAG	2 cut(s)	572, 842
Sse9I	AATT	7 cut(s)	167, 227, 243, 392, 690, 706, 891
SsiI	CCGC	2 cut(s)	356, 384
SspI	AATATT	1 cut(s)	973
StyD4I	CCNGG	2 cut(s)	344, 902
StyI	CCWWGG	1 cut(s)	988
TaaI	ACNGT	3 cut(s)	263, 967, 1004
TaqI	TCGA	2 cut(s)	288, 1015
TasI	AATT	7 cut(s)	167, 227, 243, 392, 690, 706, 891
TatI	WGTACW	3 cut(s)	263, 607, 805
TfiI	GAWTC	5 cut(s)	113, 131, 285, 451, 938
Tru1I	TTAA	5 cut(s)	230, 471, 519, 695, 954
Tru9I	TTAA	5 cut(s)	230, 471, 519, 695, 954
TscAI	CASTG	3 cut(s)	285, 726, 970
TseFI	GTSAC	2 cut(s)	104, 596
TseI	GCWGC	3 cut(s)	148, 716, 836
Tsp45I	GTSAC	2 cut(s)	104, 596
TspDTI	ATGAA	8 cut(s)	27, 126, 266, 444, 665, 795, 810, 830
TspRI	CASTG	3 cut(s)	285, 726, 970
Van91I	CCANNNNNTGG	1 cut(s)	926
XapI	RAATTY	3 cut(s)	167, 243, 690
ZrmI	AGTACT	1 cut(s)	609
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.