Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004290

Physical Location & Seq

Genomic Coordinates Reverse (-)

26628319 .. 26634026

Gene Structure 5708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1175100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1878 bp

ATGAGGGAAAAGCTTGGACTTTTAGTGGGGGTGTGGTTTCTGCTTTGTGGGGTTTGTGTGGGGAGGTTCGTGGTGGAGAAGAACAGCTTGAAGGTGACTTCTCCAAGCTCGATGAAGGGCTTGTACGAATGTGCGATTGGGAACTTTGGGGTTCCTCAATACGGAGGAACGTTGGTCGGAACTGTGTACTATCCGAAGACCAATCAGAAGGCATGCAAAGGGTTTGAAGATTTCGATGAATCCTTCAAACCGAAGCCCGGTGGTCTGCCGACGTTTCTGCTTGTCGATCGAGGAGATTGTTACTTCACATTGAAGGCATGGAATGCACAGAAAGGGGGAGCGGCTGCTATTCTTGTTGCAGATGACAGGAATGAACCGTTGATTACCATGGACAATCCTGAAGAAGAAAATGCGGATGCTGATTATCTGCAGAAAATCACAATTCCCTCGGCTCTCATTAGCAAAGAGTTGGGAGAAAGTATAAAAAAATCTCTATCAGGTGGGGAGATGGTCAACATAAATCTAGACTGGACAGAGGCTCTTCCACATCCCGATGAACGTGTTGAGTATGAGTTCTGGACGAATAGCAATGATGAGTGTGGGCCAAAGTGTGATAGCCAGATTGAGTTTGTGAAAAGCTTTAAAGGAGCAGCTCAGGTTCTTGAGCGGAAGGGGTACACCCAGTTTACTCCACACTATATAACCTGGTACTGTCCAGAAGCTTTTGTTTTGAGCAAACAGTGCAAGTCTCAGTGCATCAACCATGGGAGGTACTGTGCTCCAGATCCCGAGCAAGATTTCAGTAAAGGTTATGATGGGAAAGATGTTGTGGTTCAAAATCTCCGCCAAGCTTGCTTATATAAAGTGGCCAATGAAAGTGGAAAGCCATGGCTTTGGTGGGACTATGTAACTGACTTTGCGATACGTTGCCCAATGAAAGATAAGAAGTACACCGAAGAGTGTGCAAATCAAGTTATTGAATCCCTTGGTGCTGATCTTAAGAAGATACAGAAATGTATTGGCGACCCTGAAGCGGATGAGGAGAATGCAGTTCTGAAGGCCGAACAGGATGCACAGATTGGCAAAGGCACCCGTGGAGATGTTACGATATTGCCAACTCTTGTAATAAACAACAGACAGTATAGAGGGAAACTGGACAAAGGAGCTGTTCTCAAAGCCATCTGTGCTGGTTTCCAAGAGACCACTGAGCCCTCTGTTTGTTTAAGTGAAGATGTACAGACAAATGAGTGTTTAGAGAACAATGGAGGTTGCTGGCATGACAAAGCTGCTAACATTACCGCGTGCAGGGATACATTCCGCGGAAGAGTGTGCGAATGCCCTATTGTGCAAGGCGTAAAGTTTGTTGGTGATGGTTATACTCACTGTGAAGCTTCAGGAGCATTACGTTGTGGAATAAACAATGGAGGTTGTTGGAAGGAAACCCGATCTGGCAGGACTTACTCTGCATGTCGTGATGACCATACAAATGGTTGCAGTTGTCCACCAGGATTCAAGGGTGATGGAGAGAAAACATGTGAAGATGTTGATGAGTGCAAGGAGAAAACGGCTTGCCAATGTTCACAATGCAAATGCAAGAATACTTGGGGAAGTTACGAGTGCAGTTGCGGTGGCGGTTTACTGTACATGCGAGAAAATGATGCATGTATAGGTAAAAACGGAAGTGGTTCTGGGTCTAGCTGGGGCCTAATTTGGGTTATCATTCTCTGCTTGGGTGCTGTCGGAGTTGGGGGCTTCGCAGTTTACAAGTACCGAATCCGGAGATACATGGATTCGGAGATCCGGGCAATCATGGCGCAGTACATGCCGTTGGATAATCAAGGAGAAGTTCCGAGCCACGTCGCCCGCGGGGATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0007034 GO:0008104 GO:0008150 GO:0009940 GO:0010008 GO:0010209 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030135 GO:0030136 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA cEGF

Protein Analysis

626

Amino Acids

68.97

Weight (kDa)

5.38

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	60 - 161	2e-14	PA domain
VSR_TRX	PF25011	188 - 395	6.6e-106	Vacuolar sorting receptor thioredoxin-like domain
cEGF	PF12662	498 - 517	3.9e-07	Complement Clr-like EGF-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30290 AT2G30290
fragaria_vesca	FvH4_6g09810 FvH4_6g09810 FvH4_6g09810
malus_domestica	MD04G1175100.v1.1 MD12G1188800.v1.1
prunus_persica	Prupe.6G294400_v2.0.a1 Prupe.6G294400_v2.0.a1
pyrus_communis	pycom04g15450 pycom12g17630
rosa_chinensis	RchiOBHm_Chr3g0460421 RchiOBHm_Chr6g0252231
rosa_laevigata	RLG00000025013
rosa_multiflora	Rmu_co8220956.1_g000001 Rmu_co8306627.1_g000001 Rmu_sc0004267.1_g000012 Rmu_sc0006252.1_g000025 Rmu_sc0009799.1_g000013 Rmu_sc0021028.1_g000001 Rmu_sc0025932.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419500 Rroxscaffold_7G00216220
rosa_rugosa	Rorug03G0042500
rosa_samantha	Rh3AG100500 Rh3BG104500 Rh3CG106300 Rh3DG105800 Rh6AG020100 Rh6BG015600
rosa_wichuraiana	Rw3G008550 Rw6G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1088
AccBSI	CCGCTC	2 cut(s)	341, 667
AccII	CGCG	3 cut(s)	1301, 1320, 1866
AccIII	TCCGGA	1 cut(s)	1776
AclI	AACGTT	1 cut(s)	170
AclWI	GGATC	2 cut(s)	779, 1792
AcoI	YGGCCR	1 cut(s)	867
AcuI	CTGAAG	4 cut(s)	420, 1050, 1076, 1377
AfiI	CCNNNNNNNGG	5 cut(s)	161, 257, 1033, 1305, 1711
AflII	CTTAAG	1 cut(s)	998
AflIII	ACRYGT	2 cut(s)	559, 1532
AgsI	TTSAA	7 cut(s)	91, 227, 247, 313, 836, 980, 1513
AjiI	CACGTC	1 cut(s)	1858
AjnI	CCWGG	2 cut(s)	704, 1504
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	2 cut(s)	753, 1193
AlwI	GGATC	2 cut(s)	779, 1792
Ama87I	CYCGRG	1 cut(s)	788
Aor13HI	TCCGGA	1 cut(s)	1776
AoxI	GGCC	4 cut(s)	602, 867, 1059, 1702
ApeKI	GCWGC	3 cut(s)	344, 650, 1286
Asp700I	GAANNNNTTC	1 cut(s)	1684
AspLEI	GCGC	1 cut(s)	1816
AspS9I	GGNCC	2 cut(s)	602, 1702
AsuC2I	CCSGG	2 cut(s)	258, 1802
AsuHPI	GGTGA	3 cut(s)	106, 1379, 1529
AvaI	CYCGRG	1 cut(s)	788
BalI	TGGCCA	1 cut(s)	869
BanI	GGYRCC	1 cut(s)	1088
BanII	GRGCYC	1 cut(s)	1212
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	3 cut(s)	331, 662, 1273
BccI	CCATC	5 cut(s)	502, 809, 1187, 1364, 1514
BceAI	ACGGC	2 cut(s)	1581, 1810
BcgI	CGANNNNNNTGC	6 cut(s)	259, 293, 944, 978, 1052, 1086
BciT130I	CCWGG	2 cut(s)	706, 1506
BciVI	GTATCC	1 cut(s)	1303
BcnI	CCSGG	2 cut(s)	258, 1802
BcoDI	GTCTC	2 cut(s)	753, 1193
BfaI	CTAG	2 cut(s)	524, 1695
BfmI	CTRYAG	1 cut(s)	428
BfrI	CTTAAG	1 cut(s)	998
BfuI	GTATCC	1 cut(s)	1303
BisI	GCNGC	4 cut(s)	342, 345, 651, 1287
BlsI	GCNGC	4 cut(s)	343, 346, 652, 1288
Bme1390I	CCNGG	4 cut(s)	258, 706, 1506, 1802
BmeT110I	CYCGRG	1 cut(s)	788
BmgBI	CACGTC	1 cut(s)	1858
BmgT120I	GGNCC	2 cut(s)	602, 1702
BmiI	GGNNCC	3 cut(s)	153, 1090, 1703
BmrFI	CCNGG	4 cut(s)	258, 706, 1506, 1802
BmrI	ACTGGG	1 cut(s)	676
BmsI	GCATC	4 cut(s)	406, 765, 1060, 1648
BmuI	ACTGGG	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	203
BplI	GAGNNNNNCTC	2 cut(s)	1155, 1187
BpmI	CTGGAG	1 cut(s)	765
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	683
BpuMI	CCSGG	2 cut(s)	258, 1802
BsaI	GGTCTC	1 cut(s)	1193
BsaJI	CCNNGG	8 cut(s)	387, 447, 763, 887, 985, 1093, 1318, 1864
BsaWI	WCCGGW	1 cut(s)	1776
BsaXI	ACNNNNNCTCC	2 cut(s)	760, 790
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 257, 1033, 1305, 1711
Bse1I	ACTGG	3 cut(s)	533, 682, 1158
Bse3DI	GCAATG	1 cut(s)	595
BseAI	TCCGGA	1 cut(s)	1776
BseBI	CCWGG	2 cut(s)	706, 1506
BseDI	CCNNGG	8 cut(s)	387, 447, 763, 887, 985, 1093, 1318, 1864
BseGI	GGATG	4 cut(s)	421, 547, 1042, 1075
BseLI	CCNNNNNNNGG	5 cut(s)	161, 257, 1033, 1305, 1711
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	3 cut(s)	668, 764, 1197
BseNI	ACTGG	3 cut(s)	533, 682, 1158
BseRI	GAGGAG	2 cut(s)	306, 1055
BseXI	GCAGC	3 cut(s)	331, 662, 1273
BseYI	CCCAGC	1 cut(s)	1698
BsgI	GTGCAG	2 cut(s)	1324, 1639
Bsh1236I	CGCG	3 cut(s)	1301, 1320, 1866
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	4 cut(s)	604, 869, 1061, 1704
BshNI	GGYRCC	1 cut(s)	1088
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	781
BsiHKCI	CYCGRG	1 cut(s)	788
BsiSI	CCGG	3 cut(s)	258, 1777, 1801
BslFI	GGGAC	1 cut(s)	914
BslI	CCNNNNNNNGG	5 cut(s)	161, 257, 1033, 1305, 1711
BsmAI	GTCTC	2 cut(s)	753, 1193
BsmFI	GGGAC	1 cut(s)	914
BsmI	GAATGC	3 cut(s)	328, 1051, 1340
BsnI	GGCC	4 cut(s)	604, 869, 1061, 1704
Bso31I	GGTCTC	1 cut(s)	1193
BsoBI	CYCGRG	1 cut(s)	788
Bsp1286I	GDGCHC	2 cut(s)	781, 1212
Bsp13I	TCCGGA	1 cut(s)	1776
Bsp1407I	TGTACA	2 cut(s)	1234, 1641
Bsp143I	GATC	5 cut(s)	286, 784, 994, 1445, 1797
Bsp19I	CCATGG	3 cut(s)	387, 763, 887
BspANI	GGCC	4 cut(s)	604, 869, 1061, 1704
BspCNI	CTCAG	3 cut(s)	667, 763, 1198
BspEI	TCCGGA	1 cut(s)	1776
BspFNI	CGCG	3 cut(s)	1301, 1320, 1866
BspLI	GGNNCC	3 cut(s)	153, 1090, 1703
BspMAI	CTGCAG	1 cut(s)	432
BspPI	GGATC	2 cut(s)	779, 1792
BspQI	GCTCTTC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	1088
BspTI	CTTAAG	1 cut(s)	998
BspTNI	GGTCTC	1 cut(s)	1193
BsrBI	CCGCTC	2 cut(s)	341, 667
BsrDI	GCAATG	1 cut(s)	595
BsrGI	TGTACA	2 cut(s)	1234, 1641
BsrI	ACTGG	3 cut(s)	533, 682, 1158
BssECI	CCNNGG	8 cut(s)	387, 447, 763, 887, 985, 1093, 1318, 1864
BssMI	GATC	5 cut(s)	286, 784, 994, 1445, 1797
BssT1I	CCWWGG	4 cut(s)	387, 763, 887, 985
Bst2UI	CCWGG	2 cut(s)	706, 1506
Bst4CI	ACNGT	8 cut(s)	184, 378, 713, 741, 776, 1140, 1385, 1641
Bst6I	CTCTTC	3 cut(s)	546, 951, 1318
BstAFI	CTTAAG	1 cut(s)	998
BstAPI	GCANNNNNTGC	3 cut(s)	323, 741, 1822
BstAUI	TGTACA	2 cut(s)	1234, 1641
BstC8I	GCNNGC	6 cut(s)	214, 853, 1274, 1303, 1570, 1864
BstDEI	CTNAG	3 cut(s)	654, 750, 1206
BstDSI	CCRYGG	6 cut(s)	387, 763, 887, 1093, 1318, 1864
BstF5I	GGATG	4 cut(s)	421, 547, 1042, 1075
BstFNI	CGCG	3 cut(s)	1301, 1320, 1866
BstHHI	GCGC	1 cut(s)	1816
BstKTI	GATC	5 cut(s)	289, 787, 997, 1448, 1800
BstMAI	GTCTC	2 cut(s)	753, 1193
BstMBI	GATC	5 cut(s)	286, 784, 994, 1445, 1797
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	7 cut(s)	323, 741, 852, 1184, 1397, 1811, 1822
BstNI	CCWGG	2 cut(s)	706, 1506
BstNSI	RCATGY	6 cut(s)	216, 1470, 1536, 1648, 1665, 1825
BstSCI	CCNGG	4 cut(s)	256, 704, 1504, 1800
BstSFI	CTRYAG	1 cut(s)	428
BstUI	CGCG	3 cut(s)	1301, 1320, 1866
BstV1I	GCAGC	3 cut(s)	331, 662, 1273
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	784, 1797
BstXI	CCANNNNNNTGG	2 cut(s)	894, 1487
BstYI	RGATCY	2 cut(s)	784, 1797
BsuI	GTATCC	1 cut(s)	1303
BsuRI	GGCC	4 cut(s)	604, 869, 1061, 1704
BtgI	CCRYGG	6 cut(s)	387, 763, 887, 1093, 1318, 1864
BtrI	CACGTC	1 cut(s)	1858
BtsCI	GGATG	4 cut(s)	421, 547, 1042, 1075
BtsIMutI	CAGTG	4 cut(s)	746, 758, 1203, 1381
Cac8I	GCNNGC	6 cut(s)	214, 853, 1274, 1303, 1570, 1864
CfoI	GCGC	1 cut(s)	1816
Cfr13I	GGNCC	2 cut(s)	602, 1702
Cfr42I	CCGCGG	2 cut(s)	1321, 1867
CsiI	ACCWGGT	1 cut(s)	704
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
DdeI	CTNAG	3 cut(s)	654, 750, 1206
DpnI	GATC	5 cut(s)	288, 786, 996, 1447, 1799
DpnII	GATC	5 cut(s)	286, 784, 994, 1445, 1797
DraI	TTTAAA	1 cut(s)	643
EaeI	YGGCCR	1 cut(s)	867
Eam1104I	CTCTTC	3 cut(s)	546, 951, 1318
EarI	CTCTTC	3 cut(s)	546, 951, 1318
EciI	GGCGGA	1 cut(s)	833
Eco130I	CCWWGG	4 cut(s)	387, 763, 887, 985
Eco24I	GRGCYC	1 cut(s)	1212
Eco31I	GGTCTC	1 cut(s)	1193
Eco32I	GATATC	1 cut(s)	1873
Eco57I	CTGAAG	4 cut(s)	420, 1050, 1076, 1377
Eco88I	CYCGRG	1 cut(s)	788
EcoO109I	RGGNCCY	1 cut(s)	1702
EcoRII	CCWGG	2 cut(s)	704, 1504
EcoRV	GATATC	1 cut(s)	1873
EcoT14I	CCWWGG	4 cut(s)	387, 763, 887, 985
EcoT22I	ATGCAT	1 cut(s)	1663
EcoT38I	GRGCYC	1 cut(s)	1212
ErhI	CCWWGG	4 cut(s)	387, 763, 887, 985
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	914
FauI	CCCGC	2 cut(s)	1859, 1871
Fnu4HI	GCNGC	4 cut(s)	342, 345, 651, 1287
FokI	GGATG	4 cut(s)	428, 534, 1049, 1082
FriOI	GRGCYC	1 cut(s)	1212
Fsp4HI	GCNGC	4 cut(s)	342, 345, 651, 1287
FspBI	CTAG	2 cut(s)	524, 1695
GlaI	GCGC	1 cut(s)	1815
GluI	GCNGC	4 cut(s)	342, 345, 651, 1287
GsaI	CCCAGC	1 cut(s)	1702
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	4 cut(s)	604, 869, 1061, 1704
HapII	CCGG	3 cut(s)	258, 1777, 1801
HhaI	GCGC	1 cut(s)	1816
Hin6I	GCGC	1 cut(s)	1814
HinP1I	GCGC	1 cut(s)	1814
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	5 cut(s)	11, 637, 720, 849, 1389
HinfI	GANTC	5 cut(s)	239, 980, 1509, 1773, 1790
HpaII	CCGG	3 cut(s)	258, 1777, 1801
HphI	GGTGA	3 cut(s)	106, 1379, 1529
Hpy166II	GTNNAC	9 cut(s)	187, 514, 678, 687, 951, 1502, 1580, 1637, 1762
Hpy188I	TCNGA	8 cut(s)	179, 195, 207, 1056, 1742, 1795, 1851, 1877
Hpy8I	GTNNAC	9 cut(s)	187, 514, 678, 687, 951, 1502, 1580, 1637, 1762
Hpy99I	CGWCG	2 cut(s)	274, 1862
HpyAV	CCTTC	8 cut(s)	85, 109, 202, 253, 307, 664, 1051, 1429
HpyCH4III	ACNGT	8 cut(s)	184, 378, 713, 741, 776, 1140, 1385, 1641
HpyCH4IV	ACGT	6 cut(s)	170, 272, 559, 925, 1405, 1857
HpyF10VI	GCNNNNNNNGC	7 cut(s)	323, 741, 852, 1184, 1397, 1811, 1822
HpyF3I	CTNAG	3 cut(s)	654, 750, 1206
HpySE526I	ACGT	6 cut(s)	170, 272, 559, 925, 1405, 1857
HspAI	GCGC	1 cut(s)	1814
Kpn2I	TCCGGA	1 cut(s)	1776
KspI	CCGCGG	2 cut(s)	1321, 1867
Kzo9I	GATC	5 cut(s)	286, 784, 994, 1445, 1797
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	5 cut(s)	338, 647, 784, 1163, 1397
Lsp1109I	GCAGC	3 cut(s)	331, 662, 1273
LweI	GCATC	4 cut(s)	406, 765, 1060, 1648
MabI	ACCWGGT	1 cut(s)	704
MaeI	CTAG	2 cut(s)	524, 1695
MaeII	ACGT	6 cut(s)	170, 272, 559, 925, 1405, 1857
MaeIII	GTNAC	5 cut(s)	94, 299, 907, 1102, 1610
MalI	GATC	5 cut(s)	288, 786, 996, 1447, 1799
MbiI	CCGCTC	2 cut(s)	341, 667
MboI	GATC	5 cut(s)	286, 784, 994, 1445, 1797
MflI	RGATCY	2 cut(s)	784, 1797
MhlI	GDGCHC	2 cut(s)	781, 1212
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	2 cut(s)	441, 1707
MluNI	TGGCCA	1 cut(s)	869
MmeI	TCCRAC	4 cut(s)	157, 1412, 1720, 1809
Mox20I	TGGCCA	1 cut(s)	869
Mph1103I	ATGCAT	1 cut(s)	1663
MroI	TCCGGA	1 cut(s)	1776
MroXI	GAANNNNTTC	1 cut(s)	1684
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	3 cut(s)	642, 999, 1223
MslI	CAYNNNNRTG	2 cut(s)	552, 1485
Msp20I	TGGCCA	1 cut(s)	869
MspA1I	CMGCKG	2 cut(s)	1320, 1866
MspCI	CTTAAG	1 cut(s)	998
MspI	CCGG	3 cut(s)	258, 1777, 1801
MspR9I	CCNGG	4 cut(s)	258, 706, 1506, 1802
Mva1269I	GAATGC	3 cut(s)	328, 1051, 1340
MvaI	CCWGG	2 cut(s)	706, 1506
MvnI	CGCG	3 cut(s)	1301, 1320, 1866
MwoI	GCNNNNNNNGC	7 cut(s)	323, 741, 852, 1184, 1397, 1811, 1822
NciI	CCSGG	2 cut(s)	258, 1802
NcoI	CCATGG	3 cut(s)	387, 763, 887
NdeII	GATC	5 cut(s)	286, 784, 994, 1445, 1797
NlaIV	GGNNCC	3 cut(s)	153, 1090, 1703
NmeAIII	GCCGAG	1 cut(s)	428
NmuCI	GTSAC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	1663
NspI	RCATGY	6 cut(s)	216, 1470, 1536, 1648, 1665, 1825
PaeI	GCATGC	1 cut(s)	216
PciI	ACATGT	1 cut(s)	1532
PciSI	GCTCTTC	1 cut(s)	546
PctI	GAATGC	3 cut(s)	328, 1051, 1340
PdmI	GAANNNNTTC	1 cut(s)	1684
PfeI	GAWTC	5 cut(s)	239, 980, 1509, 1773, 1790
PkrI	GCNGC	4 cut(s)	343, 346, 652, 1288
Ple19I	CGATCG	1 cut(s)	289
PscI	ACATGT	1 cut(s)	1532
Psp1406I	AACGTT	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	704, 1504
PspFI	CCCAGC	1 cut(s)	1698
PspGI	CCWGG	2 cut(s)	704, 1504
PspN4I	GGNNCC	3 cut(s)	153, 1090, 1703
PspPI	GGNCC	2 cut(s)	602, 1702
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	2 cut(s)	784, 1797
PvuI	CGATCG	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	552, 1485
SacII	CCGCGG	2 cut(s)	1321, 1867
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	3 cut(s)	642, 999, 1223
SatI	GCNGC	4 cut(s)	342, 345, 651, 1287
Sau3AI	GATC	5 cut(s)	286, 784, 994, 1445, 1797
Sau96I	GGNCC	2 cut(s)	602, 1702
ScrFI	CCNGG	4 cut(s)	258, 706, 1506, 1802
SduI	GDGCHC	2 cut(s)	781, 1212
SexAI	ACCWGGT	1 cut(s)	704
SfaNI	GCATC	4 cut(s)	406, 765, 1060, 1648
SfcI	CTRYAG	1 cut(s)	428
Sfr303I	CCGCGG	2 cut(s)	1321, 1867
SgrBI	CCGCGG	2 cut(s)	1321, 1867
SmiMI	CAYNNNNRTG	2 cut(s)	552, 1485
SmlI	CTYRAG	2 cut(s)	662, 998
SmoI	CTYRAG	2 cut(s)	662, 998
SphI	GCATGC	1 cut(s)	216
Sse9I	AATT	2 cut(s)	441, 1707
SspMI	CTAG	2 cut(s)	524, 1695
StyD4I	CCNGG	4 cut(s)	256, 704, 1504, 1800
StyI	CCWWGG	4 cut(s)	387, 763, 887, 985
TaaI	ACNGT	8 cut(s)	184, 378, 713, 741, 776, 1140, 1385, 1641
TaiI	ACGT	6 cut(s)	173, 275, 562, 928, 1408, 1860
TaqI	TCGA	4 cut(s)	110, 234, 285, 289
TasI	AATT	2 cut(s)	441, 1707
TatI	WGTACW	5 cut(s)	186, 948, 1234, 1641, 1818
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	5 cut(s)	239, 980, 1509, 1773, 1790
Tru1I	TTAA	3 cut(s)	642, 999, 1223
Tru9I	TTAA	3 cut(s)	642, 999, 1223
TscAI	CASTG	4 cut(s)	746, 758, 1210, 1388
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	344, 650, 1286
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	6 cut(s)	128, 252, 387, 570, 888, 950
TspGWI	ACGGA	2 cut(s)	177, 1692
TspRI	CASTG	4 cut(s)	746, 758, 1210, 1388
Vha464I	CTTAAG	1 cut(s)	998
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	6 cut(s)	216, 1470, 1536, 1648, 1665, 1825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	894
XmnI	GAANNNNTTC	1 cut(s)	1684
XspI	CTAG	2 cut(s)	524, 1695
Zsp2I	ATGCAT	1 cut(s)	1663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.