RchiOBHm_Chr6g0252231

receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
7394965 .. 7399031
4067 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22614

Sequence Viewer

Length: 1287 bp
ATGAAGGAAGCGATTGGATTTTTAGTGTTCGTTTGGTTTTTGCTATGTGGGTTTTGTGTGGGGAGGTTTGTGGTGGAGAAGAACAGCTTGAAAGTGACTTCCCCAAACTCATTGAAGAATGTTTATGAATGTGCAATTGGGGATTTTGGGGTTCCTCAGTATGGAGGAACCTTGGTTGGGACTGTGTTTTATCCCAAGGCTAATCGAAAAGCATGCAGGAGTTTCGGAGATTTTGGTATCTCATTCAAATCAATGCCTGGTGGATTGCCTACCGTTATTCTTGCGGATCGAGGAGATTGTTACTTCAAATTGAAGGTTTGGAATGCACAAAGTGGTGGAGCTGCCGCTATTCTTGTTGCAGATGACAAAATTGAACCATTGATTACCATGGACGACACTCCTGAAGATCTTCCTGATTATCTGCAGAATATTACAATTCCCGAGGCCCTTATCAGCAAATCTTTGGGGGATAGCATTAAAAAAGCTCTATCTGATGGGGAAATAGTCAGCATTAATCTAGACTGGAGAGAGGCTCTTCCACATCCTGATGAGCGTGTTGAGTATGAGTTCTGGACAAACAGCAATGATGAGTGTGGACCAAACTGTGACAACCAGATTGATTTTGTGAAGAACTTTAAAGGAGCTGCTCAGGTACTTGAGCGGAAGGGGTACACACGGTTTACTCCACACTATATTACTTGGTACTGCCCAGAAGCTTTTGTTTTGAGCAAACAGTGCAGGGCTGAGTGCATCAATCATGGGAGGTACTGTGCTCCAGATCCCGAACAGGATTTTAGCAAAGGTTATGATGGGAGAGATGTTGTGGTTCAAAATCTCCGTCAAGCTTGCTTCTATAAAGTGGCCAATGAAAGTGGAAGGCCATGGCTTTGGTGGGACTATGTGACTGCCTTTGCGATTCGATGCCCAATGAAAGAGAAAAAGTACAATGCTGAGTGTGCAAATCAAGTTATTGAATCCTTAGGTGTCGATCTTAAGAAGATAGAGAAATGTATTGGGGATCCTACAGCAGATGAGGAGAATGCAGTTCTAAAGGCTGAACAGGATTTACAGATTGGCAAGGGCACCCGTGGAGATGTTACCATATTGCCAACTCTTATTATAAACAACAGACAGTACAGAGGAAAACTGGCCAAAGGAGCTGTTCTCAAGGCCATCTGTGCTGGTTTTCAAGGAACTACTAAGCCTGCTGTGTGTTTGACTGAAGAAGTAGAAACCAATGAGTCCCTCGAAAGCGATGGAGGTTGCTGCCAGGATAAAAGCTTCTAA

Protein Analysis

428

Amino Acids

47.6

Weight (kDa)

5.19

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 62 - 159 5.9e-11 PA domain
VSR_TRX PF25011 186 - 393 2.1e-104 Vacuolar sorting receptor thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1121
AccB1I GGYRCC 1 cut(s) 1082
AccBSI CCGCTC 1 cut(s) 661
AciI CCGC 3 cut(s) 284, 345, 661
AclWI GGATC 4 cut(s) 294, 773, 1013, 1026
AcoI YGGCCR 2 cut(s) 861, 1149
AcuI CTGAAG 2 cut(s) 423, 1242
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 6 cut(s) 654, 671, 704, 767, 944, 1136
AfiI CCNNNNNNNGG 2 cut(s) 161, 177
AflII CTTAAG 1 cut(s) 992
AgsI TTSAA 9 cut(s) 91, 115, 247, 307, 313, 374, 830, 974, 1190
AjnI CCWGG 2 cut(s) 256, 1269
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 8 cut(s) 87, 341, 485, 644, 716, 845, 1160, 1281
AluI AGCT 8 cut(s) 87, 341, 485, 644, 716, 845, 1160, 1281
Alw21I GWGCWC 1 cut(s) 775
AlwI GGATC 4 cut(s) 294, 773, 1013, 1026
Ama87I CYCGRG 1 cut(s) 440
AoxI GGCC 5 cut(s) 444, 861, 878, 1149, 1170
ApeKI GCWGC 3 cut(s) 341, 644, 1266
ArsI GACNNNNNNTTYG 2 cut(s) 823, 855
AseI ATTAAT 1 cut(s) 513
Asp700I GAANNNNTTC 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 445, 596
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 1 cut(s) 596
AxyI CCTNAGG 1 cut(s) 979
BaeGI GKGCMC 1 cut(s) 1085
BalI TGGCCA 2 cut(s) 863, 1151
BamHI GGATCC 1 cut(s) 1018
BanI GGYRCC 1 cut(s) 1082
Bbv12I GWGCWC 1 cut(s) 775
BbvI GCAGC 3 cut(s) 328, 631, 1253
BccI CCATC 4 cut(s) 488, 803, 1181, 1250
BcgI CGANNNNNNTGC 4 cut(s) 195, 205, 229, 239
BciT130I CCWGG 2 cut(s) 258, 1271
BfaI CTAG 1 cut(s) 518
BfmI CTRYAG 2 cut(s) 422, 1023
BfrI CTTAAG 1 cut(s) 992
BglII AGATCT 1 cut(s) 406
BisI GCNGC 4 cut(s) 342, 345, 645, 1267
BlsI GCNGC 4 cut(s) 343, 346, 646, 1268
Bme1390I CCNGG 2 cut(s) 258, 1271
Bme18I GGWCC 1 cut(s) 596
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 2 cut(s) 445, 596
BmiI GGNNCC 4 cut(s) 153, 169, 1020, 1084
BmrFI CCNGG 2 cut(s) 258, 1271
BmsI GCATC 2 cut(s) 759, 911
BplI GAGNNNNNCTC 4 cut(s) 517, 549, 1149, 1181
BpmI CTGGAG 2 cut(s) 544, 759
Bpu10I CCTNAGC 1 cut(s) 648
BpuEI CTTGAG 2 cut(s) 677, 1151
BsaJI CCNNGG 6 cut(s) 171, 195, 387, 441, 881, 1087
BsaXI ACNNNNNCTCC 2 cut(s) 754, 784
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 177
Bse1I ACTGG 2 cut(s) 527, 1152
Bse21I CCTNAGG 1 cut(s) 979
Bse3DI GCAATG 1 cut(s) 589
BseBI CCWGG 2 cut(s) 258, 1271
BseDI CCNNGG 6 cut(s) 171, 195, 387, 441, 881, 1087
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 2 cut(s) 161, 177
BseMI GCAATG 1 cut(s) 589
BseMII CTCAG 4 cut(s) 170, 662, 735, 942
BseNI ACTGG 2 cut(s) 527, 1152
BseRI GAGGAG 2 cut(s) 306, 1049
BseSI GKGCMC 1 cut(s) 1085
BseXI GCAGC 3 cut(s) 328, 631, 1253
BsgI GTGCAG 1 cut(s) 757
BshFI GGCC 5 cut(s) 446, 863, 880, 1151, 1172
BshNI GGYRCC 1 cut(s) 1082
BsiHKAI GWGCWC 1 cut(s) 775
BsiHKCI CYCGRG 1 cut(s) 440
BslFI GGGAC 3 cut(s) 193, 908, 1228
BslI CCNNNNNNNGG 2 cut(s) 161, 177
BsmFI GGGAC 3 cut(s) 193, 908, 1228
BsmI GAATGC 2 cut(s) 328, 1045
BsnI GGCC 5 cut(s) 446, 863, 880, 1151, 1172
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 775, 1085
Bsp143I GATC 5 cut(s) 286, 406, 778, 988, 1018
Bsp19I CCATGG 2 cut(s) 387, 881
BspACI CCGC 3 cut(s) 284, 345, 661
BspANI GGCC 5 cut(s) 446, 863, 880, 1151, 1172
BspCNI CTCAG 4 cut(s) 169, 661, 736, 943
BspLI GGNNCC 4 cut(s) 153, 169, 1020, 1084
BspMAI CTGCAG 1 cut(s) 426
BspPI GGATC 4 cut(s) 294, 773, 1013, 1026
BspQI GCTCTTC 1 cut(s) 540
BspT107I GGYRCC 1 cut(s) 1082
BspTI CTTAAG 1 cut(s) 992
BsrBI CCGCTC 1 cut(s) 661
BsrDI GCAATG 1 cut(s) 589
BsrI ACTGG 2 cut(s) 527, 1152
BssECI CCNNGG 6 cut(s) 171, 195, 387, 441, 881, 1087
BssMI GATC 5 cut(s) 286, 406, 778, 988, 1018
BssT1I CCWWGG 4 cut(s) 171, 195, 387, 881
Bst2UI CCWGG 2 cut(s) 258, 1271
Bst4CI ACNGT 7 cut(s) 184, 274, 605, 678, 735, 770, 1134
Bst6I CTCTTC 1 cut(s) 540
BstAFI CTTAAG 1 cut(s) 992
BstAPI GCANNNNNTGC 1 cut(s) 735
BstC8I GCNNGC 3 cut(s) 214, 847, 1206
BstDEI CTNAG 6 cut(s) 156, 648, 744, 951, 979, 1200
BstDSI CCRYGG 3 cut(s) 387, 881, 1087
BstF5I GGATG 1 cut(s) 541
BstKTI GATC 5 cut(s) 289, 409, 781, 991, 1021
BstMBI GATC 5 cut(s) 286, 406, 778, 988, 1018
BstMWI GCNNNNNNNGC 4 cut(s) 735, 956, 1157, 1178
BstNI CCWGG 2 cut(s) 258, 1271
BstNSI RCATGY 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 256, 1269
BstSFI CTRYAG 2 cut(s) 422, 1023
BstSLI GKGCMC 1 cut(s) 1085
BstV1I GCAGC 3 cut(s) 328, 631, 1253
BstX2I RGATCY 3 cut(s) 406, 778, 1018
BstXI CCANNNNNNTGG 1 cut(s) 888
BstYI RGATCY 3 cut(s) 406, 778, 1018
Bsu36I CCTNAGG 1 cut(s) 979
BsuRI GGCC 5 cut(s) 446, 863, 880, 1151, 1172
BtgI CCRYGG 3 cut(s) 387, 881, 1087
BtgZI GCGATG 1 cut(s) 1269
BtsCI GGATG 1 cut(s) 541
BtsIMutI CAGTG 1 cut(s) 740
Cac8I GCNNGC 3 cut(s) 214, 847, 1206
Cfr13I GGNCC 2 cut(s) 445, 596
Csp6I GTAC 6 cut(s) 653, 670, 703, 766, 943, 1135
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 4 cut(s) 213, 388, 758, 882
CviQI GTAC 6 cut(s) 653, 670, 703, 766, 943, 1135
DdeI CTNAG 6 cut(s) 156, 648, 744, 951, 979, 1200
DpnI GATC 5 cut(s) 288, 408, 780, 990, 1020
DpnII GATC 5 cut(s) 286, 406, 778, 988, 1018
DraI TTTAAA 1 cut(s) 637
DraIII CACNNNGTG 1 cut(s) 332
EaeI YGGCCR 2 cut(s) 861, 1149
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 4 cut(s) 171, 195, 387, 881
Eco47I GGWCC 1 cut(s) 596
Eco57I CTGAAG 2 cut(s) 423, 1242
Eco81I CCTNAGG 1 cut(s) 979
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 445
EcoRII CCWGG 2 cut(s) 256, 1269
EcoT14I CCWWGG 4 cut(s) 171, 195, 387, 881
ErhI CCWWGG 4 cut(s) 171, 195, 387, 881
FaeI CATG 4 cut(s) 216, 391, 761, 885
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 3 cut(s) 193, 908, 1228
FatI CATG 4 cut(s) 212, 387, 757, 881
Fnu4HI GCNGC 4 cut(s) 342, 345, 645, 1267
FokI GGATG 1 cut(s) 528
Fsp4HI GCNGC 4 cut(s) 342, 345, 645, 1267
FspBI CTAG 1 cut(s) 518
GluI GCNGC 4 cut(s) 342, 345, 645, 1267
GsuI CTGGAG 2 cut(s) 544, 759
HaeIII GGCC 5 cut(s) 446, 863, 880, 1151, 1172
Hin1II CATG 4 cut(s) 216, 391, 761, 885
HindIII AAGCTT 3 cut(s) 714, 843, 1279
HinfI GANTC 3 cut(s) 916, 974, 1241
Hpy166II GTNNAC 3 cut(s) 596, 672, 681
Hpy188I TCNGA 2 cut(s) 227, 493
Hpy188III TCNNGA 8 cut(s) 401, 413, 440, 518, 545, 571, 776, 782
Hpy8I GTNNAC 3 cut(s) 596, 672, 681
HpyAV CCTTC 3 cut(s) 307, 658, 870
HpyCH4III ACNGT 7 cut(s) 184, 274, 605, 678, 735, 770, 1134
HpyCH4V TGCA 9 cut(s) 134, 216, 326, 359, 424, 738, 750, 959, 1043
HpyF10VI GCNNNNNNNGC 4 cut(s) 735, 956, 1157, 1178
HpyF3I CTNAG 6 cut(s) 156, 648, 744, 951, 979, 1200
Hsp92II CATG 4 cut(s) 216, 391, 761, 885
Kzo9I GATC 5 cut(s) 286, 406, 778, 988, 1018
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 4 cut(s) 338, 641, 778, 1157
Lsp1109I GCAGC 3 cut(s) 328, 631, 1253
LweI GCATC 2 cut(s) 759, 911
MaeI CTAG 1 cut(s) 518
MaeIII GTNAC 5 cut(s) 94, 299, 605, 901, 1096
MalI GATC 5 cut(s) 288, 408, 780, 990, 1020
MbiI CCGCTC 1 cut(s) 661
MboI GATC 5 cut(s) 286, 406, 778, 988, 1018
MboII GAAGA 8 cut(s) 91, 127, 401, 416, 527, 640, 1009, 1235
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 3 cut(s) 406, 778, 1018
MhlI GDGCHC 2 cut(s) 775, 1085
MlsI TGGCCA 2 cut(s) 863, 1151
MluCI AATT 4 cut(s) 135, 308, 369, 435
MluNI TGGCCA 2 cut(s) 863, 1151
MlyI GAGTC 1 cut(s) 1250
Mox20I TGGCCA 2 cut(s) 863, 1151
MroXI GAANNNNTTC 1 cut(s) 408
MscI TGGCCA 2 cut(s) 863, 1151
MseI TTAA 4 cut(s) 477, 513, 636, 993
MslI CAYNNNNRTG 1 cut(s) 546
Msp20I TGGCCA 2 cut(s) 863, 1151
MspCI CTTAAG 1 cut(s) 992
MspR9I CCNGG 2 cut(s) 258, 1271
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 2 cut(s) 328, 1045
MvaI CCWGG 2 cut(s) 258, 1271
MwoI GCNNNNNNNGC 4 cut(s) 735, 956, 1157, 1178
NcoI CCATGG 2 cut(s) 387, 881
NdeII GATC 5 cut(s) 286, 406, 778, 988, 1018
NlaIII CATG 4 cut(s) 216, 391, 761, 885
NlaIV GGNNCC 4 cut(s) 153, 169, 1020, 1084
NmuCI GTSAC 3 cut(s) 94, 605, 901
NspI RCATGY 1 cut(s) 216
PaeI GCATGC 1 cut(s) 216
PciSI GCTCTTC 1 cut(s) 540
PctI GAATGC 2 cut(s) 328, 1045
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 2 cut(s) 916, 974
PkrI GCNGC 4 cut(s) 343, 346, 646, 1268
PleI GAGTC 1 cut(s) 1249
PpsI GAGTC 1 cut(s) 1249
PshBI ATTAAT 1 cut(s) 513
PsiI TTATAA 1 cut(s) 1121
Psp6I CCWGG 2 cut(s) 256, 1269
PspGI CCWGG 2 cut(s) 256, 1269
PspN4I GGNNCC 4 cut(s) 153, 169, 1020, 1084
PspPI GGNCC 2 cut(s) 445, 596
PsrI GAACNNNNNNTAC 2 cut(s) 1050, 1082
PstI CTGCAG 1 cut(s) 426
PsuI RGATCY 3 cut(s) 406, 778, 1018
RsaI GTAC 6 cut(s) 654, 671, 704, 767, 944, 1136
RsaNI GTAC 6 cut(s) 653, 670, 703, 766, 943, 1135
RseI CAYNNNNRTG 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 4 cut(s) 477, 513, 636, 993
SatI GCNGC 4 cut(s) 342, 345, 645, 1267
Sau3AI GATC 5 cut(s) 286, 406, 778, 988, 1018
Sau96I GGNCC 2 cut(s) 445, 596
SchI GAGTC 1 cut(s) 1250
ScrFI CCNGG 2 cut(s) 258, 1271
SduI GDGCHC 2 cut(s) 775, 1085
SfaNI GCATC 2 cut(s) 759, 911
SfcI CTRYAG 2 cut(s) 422, 1023
SinI GGWCC 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 3 cut(s) 656, 992, 1166
SmoI CTYRAG 3 cut(s) 656, 992, 1166
SphI GCATGC 1 cut(s) 216
Sse9I AATT 4 cut(s) 135, 308, 369, 435
SsiI CCGC 3 cut(s) 284, 345, 661
SspI AATATT 1 cut(s) 430
SspMI CTAG 1 cut(s) 518
StyD4I CCNGG 2 cut(s) 256, 1269
StyI CCWWGG 4 cut(s) 171, 195, 387, 881
TaaI ACNGT 7 cut(s) 184, 274, 605, 678, 735, 770, 1134
TaqI TCGA 5 cut(s) 205, 289, 919, 987, 1248
TasI AATT 4 cut(s) 135, 308, 369, 435
TatI WGTACW 2 cut(s) 942, 1134
TauI GCSGC 1 cut(s) 347
TfiI GAWTC 2 cut(s) 916, 974
Tru1I TTAA 4 cut(s) 477, 513, 636, 993
Tru9I TTAA 4 cut(s) 477, 513, 636, 993
TscAI CASTG 1 cut(s) 740
TseFI GTSAC 3 cut(s) 94, 605, 901
TseI GCWGC 3 cut(s) 341, 644, 1266
Tsp45I GTSAC 3 cut(s) 94, 605, 901
TspDTI ATGAA 4 cut(s) 17, 141, 882, 944
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 1 cut(s) 740
Vha464I CTTAAG 1 cut(s) 992
VpaK11BI GGWCC 1 cut(s) 596
VspI ATTAAT 1 cut(s) 513
XbaI TCTAGA 1 cut(s) 517
XceI RCATGY 1 cut(s) 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 888
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.