Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021028.1

Orthogroup ID

OG0004290

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1887

Gene Structure 1887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021028.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 548 bp

gtgaatgccctactgtgcaaggcgtgaagtttttgggtgatggttatactcactgtgaagcttccggagcgttacgatgtgaaatcaacaacggaggttgttggagggaaactcaaaatggccatacttactctgcatgtcgtgatgaccatacaaaaggttgcacgtgcccgccaggattcaagggtgatggagagaaaatatgtgaagatgttgatgagtgtgaggaaaaagtggcttgccaatgtgcacaatgtaaatgcaagaatacttggggcagttatgagtgcagctgtggtggtggtttactgtacatgcgagagcatgatgcatgtataagtcaaaatgccaggaatacagagtatagctggagctttatttgggttatcattctatgcttgggtgctgttggagttggaggatatgcagtttacaagtacagaatccgaagatacatggactcggagatccgggcaatcatggcacagtacatgccattggataatcaaggagaaattcctaatcatgtcacccgtggtgatatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0007034 GO:0008104 GO:0008150 GO:0009940 GO:0010008 GO:0010209 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030135 GO:0030136 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA cEGF

Protein Analysis

181

Amino Acids

20.16

Weight (kDa)

5.37

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30290 AT2G30290
fragaria_vesca	FvH4_6g09810 FvH4_6g09810 FvH4_6g09810
malus_domestica	MD04G1175100.v1.1 MD12G1188800.v1.1
prunus_persica	Prupe.6G294400_v2.0.a1 Prupe.6G294400_v2.0.a1
pyrus_communis	pycom04g15450 pycom12g17630
rosa_chinensis	RchiOBHm_Chr3g0460421 RchiOBHm_Chr6g0252231
rosa_laevigata	RLG00000025013
rosa_multiflora	Rmu_co8220956.1_g000001 Rmu_co8306627.1_g000001 Rmu_sc0004267.1_g000012 Rmu_sc0006252.1_g000025 Rmu_sc0009799.1_g000013 Rmu_sc0021028.1_g000001 Rmu_sc0025932.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419500 Rroxscaffold_7G00216220
rosa_rugosa	Rorug03G0042500
rosa_samantha	Rh3AG100500 Rh3BG104500 Rh3CG106300 Rh3DG105800 Rh6AG020100 Rh6BG015600
rosa_wichuraiana	Rw3G008550 Rw6G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	515
AcvI	CACGTG	1 cut(s)	167
AfaI	GTAC	3 cut(s)	313, 439, 490
AgsI	TTSAA	1 cut(s)	183
AjnI	CCWGG	2 cut(s)	174, 349
AluBI	AGCT	4 cut(s)	61, 293, 368, 374
AluI	AGCT	4 cut(s)	61, 293, 368, 374
Alw21I	GWGCWC	1 cut(s)	252
Alw44I	GTGCAC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	462
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	1 cut(s)	120
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	290
ApoI	RAATTY	1 cut(s)	515
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	3 cut(s)	49, 199, 522
BaeGI	GKGCMC	2 cut(s)	172, 252
BalI	TGGCCA	1 cut(s)	122
BbrPI	CACGTG	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	302
BccI	CCATC	2 cut(s)	34, 184
BciT130I	CCWGG	2 cut(s)	176, 351
BcnI	CCSGG	1 cut(s)	472
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	3 cut(s)	176, 351, 472
BmrFI	CCNGG	3 cut(s)	176, 351, 472
BmsI	GCATC	1 cut(s)	318
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
BpmI	CTGGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	472
BsaAI	YACGTR	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	64
BseAI	TCCGGA	1 cut(s)	64
BseBI	CCWGG	2 cut(s)	176, 351
BseDI	CCNNGG	1 cut(s)	534
BseSI	GKGCMC	2 cut(s)	172, 252
BseXI	GCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	2 cut(s)	65, 471
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	172, 252
Bsp13I	TCCGGA	1 cut(s)	64
Bsp1407I	TGTACA	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	467
BspACI	CCGC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	122
BspEI	TCCGGA	1 cut(s)	64
BspPI	GGATC	1 cut(s)	462
BsrGI	TGTACA	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	1 cut(s)	467
Bst2UI	CCWGG	2 cut(s)	176, 351
Bst4CI	ACNGT	4 cut(s)	15, 55, 311, 488
BstAUI	TGTACA	1 cut(s)	311
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	172, 240
BstDSI	CCRYGG	1 cut(s)	534
BstKTI	GATC	1 cut(s)	470
BstMBI	GATC	1 cut(s)	467
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 481
BstNI	CCWGG	2 cut(s)	176, 351
BstNSI	RCATGY	4 cut(s)	140, 318, 335, 495
BstSCI	CCNGG	3 cut(s)	174, 349, 470
BstSLI	GKGCMC	2 cut(s)	172, 252
BstV1I	GCAGC	1 cut(s)	302
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	172, 240
Csp6I	GTAC	3 cut(s)	312, 438, 489
CviAII	CATG	8 cut(s)	137, 315, 325, 332, 456, 480, 492, 526
CviJI	RGCY	6 cut(s)	61, 122, 238, 293, 368, 374
CviKI_1	RGCY	6 cut(s)	61, 122, 238, 293, 368, 374
CviQI	GTAC	3 cut(s)	312, 438, 489
DpnI	GATC	1 cut(s)	469
DpnII	GATC	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	543
Eco72I	CACGTG	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	174, 349
EcoRV	GATATC	1 cut(s)	543
EcoT22I	ATGCAT	1 cut(s)	333
FaeI	CATG	8 cut(s)	140, 318, 328, 335, 459, 483, 495, 529
FatI	CATG	8 cut(s)	136, 314, 324, 331, 455, 479, 491, 525
FauI	CCCGC	1 cut(s)	179
Fnu4HI	GCNGC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	2 cut(s)	65, 471
Hin1II	CATG	8 cut(s)	140, 318, 328, 335, 459, 483, 495, 529
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	3 cut(s)	179, 443, 460
HpaII	CCGG	2 cut(s)	65, 471
HphI	GGTGA	3 cut(s)	49, 199, 522
Hpy166II	GTNNAC	3 cut(s)	250, 307, 432
Hpy188I	TCNGA	3 cut(s)	448, 465, 547
Hpy188III	TCNNGA	2 cut(s)	65, 142
Hpy8I	GTNNAC	3 cut(s)	250, 307, 432
HpyCH4III	ACNGT	4 cut(s)	15, 55, 311, 488
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	8 cut(s)	18, 136, 164, 250, 263, 290, 331, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 481
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	8 cut(s)	140, 318, 328, 335, 459, 483, 495, 529
Kpn2I	TCCGGA	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	467
LmnI	GCTCC	2 cut(s)	67, 371
LpnPI	CCDG	7 cut(s)	78, 161, 188, 336, 354, 363, 484
Lsp1109I	GCAGC	1 cut(s)	302
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	2 cut(s)	71, 528
MalI	GATC	1 cut(s)	469
MboI	GATC	1 cut(s)	467
MboII	GAAGA	2 cut(s)	220, 461
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	2 cut(s)	172, 252
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	1 cut(s)	515
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	1 cut(s)	454
MmeI	TCCRAC	3 cut(s)	82, 390, 396
MnlI	CCTC	4 cut(s)	88, 98, 219, 412
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	333
MroI	TCCGGA	1 cut(s)	64
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	2 cut(s)	65, 471
MspR9I	CCNGG	3 cut(s)	176, 351, 472
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	2 cut(s)	176, 351
MwoI	GCNNNNNNNGC	2 cut(s)	67, 481
NciI	CCSGG	1 cut(s)	472
NdeII	GATC	1 cut(s)	467
NlaIII	CATG	8 cut(s)	140, 318, 328, 335, 459, 483, 495, 529
NmuCI	GTSAC	1 cut(s)	528
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	4 cut(s)	140, 318, 335, 495
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	2 cut(s)	179, 443
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	1 cut(s)	454
PmaCI	CACGTG	1 cut(s)	167
PmlI	CACGTG	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	454
Ppu21I	YACGTR	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	174, 349
PspCI	CACGTG	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	174, 349
PsuI	RGATCY	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	313, 439, 490
RsaNI	GTAC	3 cut(s)	312, 438, 489
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	1 cut(s)	467
SchI	GAGTC	1 cut(s)	454
ScrFI	CCNGG	3 cut(s)	176, 351, 472
SduI	GDGCHC	2 cut(s)	172, 252
SetI	ASST	7 cut(s)	63, 99, 162, 169, 295, 370, 376
SfaNI	GCATC	1 cut(s)	318
Sse9I	AATT	1 cut(s)	515
SsiI	CCGC	1 cut(s)	172
StyD4I	CCNGG	3 cut(s)	174, 349, 470
TaaI	ACNGT	4 cut(s)	15, 55, 311, 488
TaiI	ACGT	1 cut(s)	169
TasI	AATT	1 cut(s)	515
TatI	WGTACW	3 cut(s)	311, 437, 488
TfiI	GAWTC	2 cut(s)	179, 443
TscAI	CASTG	1 cut(s)	58
TseFI	GTSAC	1 cut(s)	528
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	528
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	58
VneI	GTGCAC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	515
XceI	RCATGY	4 cut(s)	140, 318, 335, 495
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.