Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8220956.1

Orthogroup ID

OG0004290

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 740

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8220956.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 329 bp

atgttccagatgttgatgagtgtgaggaaaaagtggcttgccaatgtgcacaatgtaaatgcaagaatacttggggcagttatgagtgcagctgtggtggtggtttactgtacatgcgagagcatgatgcatgtataagtcaaaatgccaggaatacagagtatagctggagctttatttgggttatcattctatgcttgggtgctgttggagttggaggatatgcagtttacaagtacagaatccgaagatacatggactcggagatccgggcaatcatggcacagtacatgccattggataatcaaggagaaattcctaatcatgtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0007034 GO:0008104 GO:0008150 GO:0009940 GO:0010008 GO:0010209 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030135 GO:0030136 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA cEGF

Protein Analysis

109

Amino Acids

12.39

Weight (kDa)

5.28

Isoelectric Point (pI)

57.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30290 AT2G30290
fragaria_vesca	FvH4_6g09810 FvH4_6g09810 FvH4_6g09810
malus_domestica	MD04G1175100.v1.1 MD12G1188800.v1.1
prunus_persica	Prupe.6G294400_v2.0.a1 Prupe.6G294400_v2.0.a1
pyrus_communis	pycom04g15450 pycom12g17630
rosa_chinensis	RchiOBHm_Chr3g0460421 RchiOBHm_Chr6g0252231
rosa_laevigata	RLG00000025013
rosa_multiflora	Rmu_co8220956.1_g000001 Rmu_co8306627.1_g000001 Rmu_sc0004267.1_g000012 Rmu_sc0006252.1_g000025 Rmu_sc0009799.1_g000013 Rmu_sc0021028.1_g000001 Rmu_sc0025932.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419500 Rroxscaffold_7G00216220
rosa_rugosa	Rorug03G0042500
rosa_samantha	Rh3AG100500 Rh3BG104500 Rh3CG106300 Rh3DG105800 Rh6AG020100 Rh6BG015600
rosa_wichuraiana	Rw3G008550 Rw6G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	3 cut(s)	112, 238, 289
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	3 cut(s)	92, 167, 173
AluI	AGCT	3 cut(s)	92, 167, 173
Alw21I	GWGCWC	1 cut(s)	51
Alw44I	GTGCAC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	261
ApaLI	GTGCAC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	314
AsuC2I	CCSGG	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	101
BciT130I	CCWGG	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	271
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	150, 271
BmrFI	CCNGG	2 cut(s)	150, 271
BmsI	GCATC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp1407I	TGTACA	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	110
BssMI	GATC	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	110, 287
BstAUI	TGTACA	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	39
BstKTI	GATC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	3 cut(s)	117, 134, 294
BstSCI	CCNGG	2 cut(s)	148, 269
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
Cac8I	GCNNGC	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	111, 237, 288
CviAII	CATG	7 cut(s)	114, 124, 131, 255, 279, 291, 325
CviJI	RGCY	4 cut(s)	37, 92, 167, 173
CviKI_1	RGCY	4 cut(s)	37, 92, 167, 173
CviQI	GTAC	3 cut(s)	111, 237, 288
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	7 cut(s)	117, 127, 134, 258, 282, 294, 328
FatI	CATG	7 cut(s)	113, 123, 130, 254, 278, 290, 324
Fnu4HI	GCNGC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	189
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	7 cut(s)	117, 127, 134, 258, 282, 294, 328
HinfI	GANTC	2 cut(s)	242, 259
HpaII	CCGG	1 cut(s)	270
Hpy166II	GTNNAC	3 cut(s)	49, 106, 231
Hpy188I	TCNGA	2 cut(s)	247, 264
Hpy188III	TCNNGA	1 cut(s)	7
Hpy8I	GTNNAC	3 cut(s)	49, 106, 231
HpyCH4III	ACNGT	2 cut(s)	110, 287
HpyCH4V	TGCA	5 cut(s)	49, 62, 89, 130, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
Hsp92II	CATG	7 cut(s)	117, 127, 134, 258, 282, 294, 328
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	5 cut(s)	20, 135, 153, 162, 283
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	117
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	2 cut(s)	189, 195
MnlI	CCTC	2 cut(s)	18, 211
Mph1103I	ATGCAT	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	150, 271
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	280
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	7 cut(s)	117, 127, 134, 258, 282, 294, 328
NsiI	ATGCAT	1 cut(s)	132
NspI	RCATGY	3 cut(s)	117, 134, 294
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	3 cut(s)	112, 238, 289
RsaNI	GTAC	3 cut(s)	111, 237, 288
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	150, 271
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	3 cut(s)	94, 169, 175
SfaNI	GCATC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	148, 269
TaaI	ACNGT	2 cut(s)	110, 287
TasI	AATT	1 cut(s)	314
TatI	WGTACW	3 cut(s)	110, 236, 287
TfiI	GAWTC	1 cut(s)	242
TseI	GCWGC	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	3 cut(s)	117, 134, 294
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.