Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0004290

Physical Location & Seq

Genomic Coordinates Forward (+)

8372775 .. 8378942

Gene Structure 6168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1575 bp

ATGAAGGAAAAGATTGGATTTTTAGTGTTTGTTTGGTTTTTGCTATGTGGGTTTTGTGTGGGGAGGTTTGTGGTGGAGAAGAACAGCTTGAAAGTGACTTCCCCAAACTCATTGAAGGATGTTTATGAATGTGCAATTGGGAATTTTGGGGTTCCTCAGTATGGAGGAACCTTGGTTGGGACTGTATATTATCCCAAGGCTAATCAAAAAGCATGCAAGAGTTTTGAAGATTTCGATATCTCATTCAAATCAAAGCCTGGTGGATTACCTACCTTTCTTCTTGCGGATCGAGGAGATTGTTACTTCACATTGAAGGCTTGGAATGCACAAAATGGTGGAGCGGCCGCTATTCTTGTTGCAGATGACAGAACTGAACCATTGATTACCATGGACACTCCTGAGGAAGAAAAGGAAGATGCTGATTATCTGCAGAAAATTGCAATTCCCTCGGCCCTTATCAGCAAATCTCTGGGGGATAGCATTAAAAAAGCTCTATCTGATGGGGAGATGGTCAACATTAATCTAGACTGGACAGAGGCTCTTCCACATCCTGATGAGCGTGTTGAGTATGAGTTCTGGACAAACAGCAATGATGAGTGTGGACCAAAGTGTGACAGCCAGATTGATTTTGTGAAGAACTTTAAAGGAGCTGCTCAGGTACTTGAGCGGAAGGGGTACACACAGTTTACTCCACACTATATTACTTGGTACTGCCCAGACGCTTTTGTTTTGAGCAAACAGTGCAAGGCTCAGTGCATTAATCATGGGAGGTACTGTGCTCCAGATCCCGAACAGGATTTTAGTAAAGGTTATGATGGGAAAGATGTTGTGGTTCAAAATCTCCGTCAAGCTTGCTTCTATAAAGTGGCCAATGAAAGTGGAAGGCCATGGCTTTGGTGGGACTATGTGACTGACTTTGCGATTCGATGCCCAATGAAAGAGAAAAAGTACACTTCTGAGTGTGCAAATCAAGTTATTGAATCCTTGGGTGTTGATCTTAAGAAGATACAGAAATGTATTGGGGATCCCAAGGCAAATGAGGAGAATGCGGTTCTAAAGGCTGAACAGGATGCACAGATTGGCAAGGGCTCCCGTGGAGATGTTACCATATTGCCAACTCTTATTATAAACAACAGACAGTACAGAGGAAAATTGGCCAAAGGAGCTGTTCTCAAGGCCATCTGTGCTGGTTTTCAAGAAACTACTGAGCCTGCTGTGTGTTTGAGTGAAGAAGTGCAAACCAATGAATGCATGGAAAACAATGGAGGTTGCTGGCAGGACAAAGCTTCTAACTTAACTGCATGCAGGGATACATTCCGGGGAAGAGTGTGTGAATGCCCTACTGTGCAAGGCGTGAAGTTTTTGGGTGATGGTTATACTCGCTGTGAAGCTTCCGGAGCGTTACGATGTGAAATCAACAACGGAGGTTGTTGGAGGGAAACTCAAAATGGCCATACTTACTCTGCATGTCGTGATGACCATACAAAAGGTTGCACGTGCCCGCCAGGATTCAAGGGTGATGGAGAGAAAACATGTGAAGGTACTCACTGCCTCTGGATCACTATTAGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0007034 GO:0008104 GO:0008150 GO:0009940 GO:0010008 GO:0010209 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030135 GO:0030136 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA cEGF

Protein Analysis

524

Amino Acids

58.23

Weight (kDa)

5.46

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	60 - 161	7e-13	PA domain
VSR_TRX	PF25011	188 - 395	3.2e-105	Vacuolar sorting receptor thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30290 AT2G30290
fragaria_vesca	FvH4_6g09810 FvH4_6g09810 FvH4_6g09810
malus_domestica	MD04G1175100.v1.1 MD12G1188800.v1.1
prunus_persica	Prupe.6G294400_v2.0.a1 Prupe.6G294400_v2.0.a1
pyrus_communis	pycom04g15450 pycom12g17630
rosa_chinensis	RchiOBHm_Chr3g0460421 RchiOBHm_Chr6g0252231
rosa_laevigata	RLG00000025013
rosa_multiflora	Rmu_co8220956.1_g000001 Rmu_co8306627.1_g000001 Rmu_sc0004267.1_g000012 Rmu_sc0006252.1_g000025 Rmu_sc0009799.1_g000013 Rmu_sc0021028.1_g000001 Rmu_sc0025932.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419500 Rroxscaffold_7G00216220
rosa_rugosa	Rorug03G0042500
rosa_samantha	Rh3AG100500 Rh3BG104500 Rh3CG106300 Rh3DG105800 Rh6AG020100 Rh6BG015600
rosa_wichuraiana	Rw3G008550 Rw6G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1127
AccBSI	CCGCTC	2 cut(s)	341, 667
AccIII	TCCGGA	1 cut(s)	1394
AciI	CCGC	6 cut(s)	284, 341, 345, 667, 1049, 1502
AclWI	GGATC	5 cut(s)	294, 779, 1019, 1032, 1565
AcoI	YGGCCR	4 cut(s)	342, 867, 1155, 1450
AcsI	RAATTY	1 cut(s)	142
AcvI	CACGTG	1 cut(s)	1497
AfaI	GTAC	7 cut(s)	660, 677, 710, 773, 950, 1142, 1543
AfiI	CCNNNNNNNGG	2 cut(s)	161, 177
AflII	CTTAAG	1 cut(s)	998
AflIII	ACRYGT	1 cut(s)	1532
AgsI	TTSAA	9 cut(s)	91, 115, 227, 247, 313, 836, 980, 1196, 1513
AjnI	CCWGG	2 cut(s)	256, 1504
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	7 cut(s)	87, 491, 650, 851, 1166, 1286, 1391
AluI	AGCT	7 cut(s)	87, 491, 650, 851, 1166, 1286, 1391
Alw21I	GWGCWC	1 cut(s)	781
AlwI	GGATC	5 cut(s)	294, 779, 1019, 1032, 1565
Aor13HI	TCCGGA	1 cut(s)	1394
AoxI	GGCC	7 cut(s)	342, 450, 867, 884, 1155, 1176, 1450
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	1 cut(s)	142
ArsI	GACNNNNNNTTYG	2 cut(s)	829, 861
AseI	ATTAAT	2 cut(s)	519, 759
AspS9I	GGNCC	2 cut(s)	451, 602
AsuC2I	CCSGG	1 cut(s)	1319
AsuHPI	GGTGA	2 cut(s)	1379, 1529
AvaII	GGWCC	1 cut(s)	602
AxyI	CCTNAGG	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	1502
BalI	TGGCCA	3 cut(s)	869, 1157, 1452
BamHI	GGATCC	1 cut(s)	1024
BanII	GRGCYC	1 cut(s)	1091
BbrPI	CACGTG	1 cut(s)	1497
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	6 cut(s)	494, 502, 809, 1187, 1364, 1514
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	2 cut(s)	258, 1506
BciVI	GTATCC	1 cut(s)	1303
BcnI	CCSGG	1 cut(s)	1319
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	428
BfrI	CTTAAG	1 cut(s)	998
BfuI	GTATCC	1 cut(s)	1303
BisI	GCNGC	3 cut(s)	342, 345, 651
BlsI	GCNGC	3 cut(s)	343, 346, 652
Bme1390I	CCNGG	3 cut(s)	258, 1319, 1506
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	2 cut(s)	451, 602
BmiI	GGNNCC	4 cut(s)	153, 169, 1026, 1090
BmrFI	CCNGG	3 cut(s)	258, 1319, 1506
BmsI	GCATC	3 cut(s)	406, 917, 1060
BplI	GAGNNNNNCTC	4 cut(s)	1155, 1187, 1426, 1458
BpmI	CTGGAG	1 cut(s)	765
Bpu10I	CCTNAGC	1 cut(s)	654
BpuEI	CTTGAG	2 cut(s)	683, 1157
BpuMI	CCSGG	1 cut(s)	1319
BsaAI	YACGTR	1 cut(s)	1497
BsaJI	CCNNGG	9 cut(s)	171, 195, 387, 447, 887, 984, 1029, 1093, 1318
BsaWI	WCCGGW	1 cut(s)	1394
BsaXI	ACNNNNNCTCC	2 cut(s)	760, 790
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 177
Bse1I	ACTGG	1 cut(s)	533
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	595
BseAI	TCCGGA	1 cut(s)	1394
BseBI	CCWGG	2 cut(s)	258, 1506
BseDI	CCNNGG	9 cut(s)	171, 195, 387, 447, 887, 984, 1029, 1093, 1318
BseGI	GGATG	3 cut(s)	124, 547, 1075
BseLI	CCNNNNNNNGG	2 cut(s)	161, 177
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	6 cut(s)	170, 390, 668, 764, 948, 1197
BseNI	ACTGG	1 cut(s)	533
BseRI	GAGGAG	2 cut(s)	306, 1055
BseSI	GKGCMC	1 cut(s)	1502
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	637
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	7 cut(s)	344, 452, 869, 886, 1157, 1178, 1452
BsiEI	CGRYCG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	781
BsiSI	CCGG	2 cut(s)	1318, 1395
BslFI	GGGAC	2 cut(s)	193, 914
BslI	CCNNNNNNNGG	2 cut(s)	161, 177
BsmFI	GGGAC	2 cut(s)	193, 914
BsmI	GAATGC	4 cut(s)	328, 1051, 1253, 1340
BsnI	GGCC	7 cut(s)	344, 452, 869, 886, 1157, 1178, 1452
Bsp1286I	GDGCHC	3 cut(s)	781, 1091, 1502
Bsp13I	TCCGGA	1 cut(s)	1394
Bsp143I	GATC	5 cut(s)	286, 784, 994, 1024, 1557
Bsp19I	CCATGG	2 cut(s)	387, 887
BspACI	CCGC	6 cut(s)	284, 341, 345, 667, 1049, 1502
BspANI	GGCC	7 cut(s)	344, 452, 869, 886, 1157, 1178, 1452
BspCNI	CTCAG	6 cut(s)	169, 391, 667, 763, 949, 1198
BspEI	TCCGGA	1 cut(s)	1394
BspLI	GGNNCC	4 cut(s)	153, 169, 1026, 1090
BspMAI	CTGCAG	1 cut(s)	432
BspPI	GGATC	5 cut(s)	294, 779, 1019, 1032, 1565
BspQI	GCTCTTC	1 cut(s)	546
BspTI	CTTAAG	1 cut(s)	998
BsrBI	CCGCTC	2 cut(s)	341, 667
BsrDI	GCAATG	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	533
BssECI	CCNNGG	9 cut(s)	171, 195, 387, 447, 887, 984, 1029, 1093, 1318
BssMI	GATC	5 cut(s)	286, 784, 994, 1024, 1557
BssT1I	CCWWGG	6 cut(s)	171, 195, 387, 887, 984, 1029
Bst2UI	CCWGG	2 cut(s)	258, 1506
Bst4CI	ACNGT	6 cut(s)	184, 684, 741, 776, 1140, 1345
Bst6I	CTCTTC	2 cut(s)	546, 1318
BstAFI	CTTAAG	1 cut(s)	998
BstAPI	GCANNNNNTGC	1 cut(s)	741
BstBAI	YACGTR	1 cut(s)	1497
BstC8I	GCNNGC	6 cut(s)	214, 853, 1212, 1274, 1303, 1502
BstDEI	CTNAG	6 cut(s)	156, 399, 654, 750, 957, 1206
BstDSI	CCRYGG	3 cut(s)	387, 887, 1093
BstF5I	GGATG	3 cut(s)	124, 547, 1075
BstKTI	GATC	5 cut(s)	289, 787, 997, 1027, 1560
BstMBI	GATC	5 cut(s)	286, 784, 994, 1024, 1557
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	5 cut(s)	323, 741, 1163, 1184, 1397
BstNI	CCWGG	2 cut(s)	258, 1506
BstNSI	RCATGY	4 cut(s)	216, 1305, 1470, 1536
BstSCI	CCNGG	3 cut(s)	256, 1317, 1504
BstSFI	CTRYAG	1 cut(s)	428
BstSLI	GKGCMC	1 cut(s)	1502
BstV1I	GCAGC	1 cut(s)	637
BstX2I	RGATCY	2 cut(s)	784, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	894
BstYI	RGATCY	2 cut(s)	784, 1024
BstZI	CGGCCG	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	399
BsuI	GTATCC	1 cut(s)	1303
BsuRI	GGCC	7 cut(s)	344, 452, 869, 886, 1157, 1178, 1452
BtgI	CCRYGG	3 cut(s)	387, 887, 1093
BtsCI	GGATG	3 cut(s)	124, 547, 1075
BtsI	GCAGTG	1 cut(s)	1546
BtsIMutI	CAGTG	3 cut(s)	746, 758, 1546
Cac8I	GCNNGC	6 cut(s)	214, 853, 1212, 1274, 1303, 1502
CciNI	GCGGCCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	451, 602
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	7 cut(s)	659, 676, 709, 772, 949, 1141, 1542
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
CviAII	CATG	8 cut(s)	213, 388, 764, 888, 1252, 1302, 1467, 1533
CviQI	GTAC	7 cut(s)	659, 676, 709, 772, 949, 1141, 1542
DdeI	CTNAG	6 cut(s)	156, 399, 654, 750, 957, 1206
DpnI	GATC	5 cut(s)	288, 786, 996, 1026, 1559
DpnII	GATC	5 cut(s)	286, 784, 994, 1024, 1557
DraI	TTTAAA	1 cut(s)	643
EaeI	YGGCCR	4 cut(s)	342, 867, 1155, 1450
EagI	CGGCCG	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	546, 1318
EarI	CTCTTC	2 cut(s)	546, 1318
EclXI	CGGCCG	1 cut(s)	342
Eco130I	CCWWGG	6 cut(s)	171, 195, 387, 887, 984, 1029
Eco24I	GRGCYC	1 cut(s)	1091
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	602
Eco52I	CGGCCG	1 cut(s)	342
Eco72I	CACGTG	1 cut(s)	1497
Eco81I	CCTNAGG	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	256, 1504
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	6 cut(s)	171, 195, 387, 887, 984, 1029
EcoT22I	ATGCAT	1 cut(s)	1253
EcoT38I	GRGCYC	1 cut(s)	1091
ErhI	CCWWGG	6 cut(s)	171, 195, 387, 887, 984, 1029
FaeI	CATG	8 cut(s)	216, 391, 767, 891, 1255, 1305, 1470, 1536
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	2 cut(s)	193, 914
FatI	CATG	8 cut(s)	212, 387, 763, 887, 1251, 1301, 1466, 1532
FauI	CCCGC	1 cut(s)	1509
Fnu4HI	GCNGC	3 cut(s)	342, 345, 651
FokI	GGATG	3 cut(s)	131, 534, 1082
FriOI	GRGCYC	1 cut(s)	1091
Fsp4HI	GCNGC	3 cut(s)	342, 345, 651
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	3 cut(s)	342, 345, 651
GsuI	CTGGAG	1 cut(s)	765
HaeIII	GGCC	7 cut(s)	344, 452, 869, 886, 1157, 1178, 1452
HapII	CCGG	2 cut(s)	1318, 1395
HgaI	GACGC	1 cut(s)	728
Hin1II	CATG	8 cut(s)	216, 391, 767, 891, 1255, 1305, 1470, 1536
HincII	GTYRAC	1 cut(s)	514
HindII	GTYRAC	1 cut(s)	514
HindIII	AAGCTT	3 cut(s)	849, 1284, 1389
HinfI	GANTC	3 cut(s)	922, 980, 1509
HpaII	CCGG	2 cut(s)	1318, 1395
HphI	GGTGA	2 cut(s)	1379, 1529
Hpy166II	GTNNAC	5 cut(s)	514, 602, 678, 687, 951
Hpy188I	TCNGA	2 cut(s)	499, 958
Hpy8I	GTNNAC	5 cut(s)	514, 602, 678, 687, 951
HpyAV	CCTTC	5 cut(s)	109, 307, 664, 876, 1532
HpyCH4III	ACNGT	6 cut(s)	184, 684, 741, 776, 1140, 1345
HpyCH4IV	ACGT	1 cut(s)	1496
HpyF10VI	GCNNNNNNNGC	5 cut(s)	323, 741, 1163, 1184, 1397
HpyF3I	CTNAG	6 cut(s)	156, 399, 654, 750, 957, 1206
HpySE526I	ACGT	1 cut(s)	1496
Hsp92II	CATG	8 cut(s)	216, 391, 767, 891, 1255, 1305, 1470, 1536
Kpn2I	TCCGGA	1 cut(s)	1394
Kzo9I	GATC	5 cut(s)	286, 784, 994, 1024, 1557
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	6 cut(s)	338, 647, 784, 1094, 1163, 1397
Lsp1109I	GCAGC	1 cut(s)	637
LweI	GCATC	3 cut(s)	406, 917, 1060
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	1496
MaeIII	GTNAC	6 cut(s)	94, 299, 611, 907, 1102, 1401
MalI	GATC	5 cut(s)	288, 786, 996, 1026, 1559
MbiI	CCGCTC	2 cut(s)	341, 667
MboI	GATC	5 cut(s)	286, 784, 994, 1024, 1557
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	2 cut(s)	784, 1024
MhlI	GDGCHC	3 cut(s)	781, 1091, 1502
MlsI	TGGCCA	3 cut(s)	869, 1157, 1452
MluCI	AATT	5 cut(s)	135, 142, 435, 441, 1151
MluNI	TGGCCA	3 cut(s)	869, 1157, 1452
MmeI	TCCRAC	1 cut(s)	1412
Mox20I	TGGCCA	3 cut(s)	869, 1157, 1452
Mph1103I	ATGCAT	1 cut(s)	1253
MroI	TCCGGA	1 cut(s)	1394
MscI	TGGCCA	3 cut(s)	869, 1157, 1452
MseI	TTAA	6 cut(s)	483, 519, 642, 759, 999, 1295
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	3 cut(s)	869, 1157, 1452
MspCI	CTTAAG	1 cut(s)	998
MspI	CCGG	2 cut(s)	1318, 1395
MspR9I	CCNGG	3 cut(s)	258, 1319, 1506
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	4 cut(s)	328, 1051, 1253, 1340
MvaI	CCWGG	2 cut(s)	258, 1506
MwoI	GCNNNNNNNGC	5 cut(s)	323, 741, 1163, 1184, 1397
NciI	CCSGG	1 cut(s)	1319
NcoI	CCATGG	2 cut(s)	387, 887
NdeII	GATC	5 cut(s)	286, 784, 994, 1024, 1557
NlaIII	CATG	8 cut(s)	216, 391, 767, 891, 1255, 1305, 1470, 1536
NlaIV	GGNNCC	4 cut(s)	153, 169, 1026, 1090
NmeAIII	GCCGAG	1 cut(s)	428
NmuCI	GTSAC	3 cut(s)	94, 611, 907
NotI	GCGGCCGC	1 cut(s)	342
NsiI	ATGCAT	1 cut(s)	1253
NspI	RCATGY	4 cut(s)	216, 1305, 1470, 1536
PaeI	GCATGC	2 cut(s)	216, 1305
PciI	ACATGT	1 cut(s)	1532
PciSI	GCTCTTC	1 cut(s)	546
PctI	GAATGC	4 cut(s)	328, 1051, 1253, 1340
PfeI	GAWTC	3 cut(s)	922, 980, 1509
PkrI	GCNGC	3 cut(s)	343, 346, 652
PmaCI	CACGTG	1 cut(s)	1497
PmlI	CACGTG	1 cut(s)	1497
Ppu21I	YACGTR	1 cut(s)	1497
PscI	ACATGT	1 cut(s)	1532
PshBI	ATTAAT	2 cut(s)	519, 759
PsiI	TTATAA	1 cut(s)	1127
Psp6I	CCWGG	2 cut(s)	256, 1504
PspCI	CACGTG	1 cut(s)	1497
PspGI	CCWGG	2 cut(s)	256, 1504
PspN4I	GGNNCC	4 cut(s)	153, 169, 1026, 1090
PspPI	GGNCC	2 cut(s)	451, 602
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	2 cut(s)	784, 1024
RsaI	GTAC	7 cut(s)	660, 677, 710, 773, 950, 1142, 1543
RsaNI	GTAC	7 cut(s)	659, 676, 709, 772, 949, 1141, 1542
RseI	CAYNNNNRTG	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	6 cut(s)	483, 519, 642, 759, 999, 1295
SatI	GCNGC	3 cut(s)	342, 345, 651
Sau3AI	GATC	5 cut(s)	286, 784, 994, 1024, 1557
Sau96I	GGNCC	2 cut(s)	451, 602
ScrFI	CCNGG	3 cut(s)	258, 1319, 1506
SduI	GDGCHC	3 cut(s)	781, 1091, 1502
SfaNI	GCATC	3 cut(s)	406, 917, 1060
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	602
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	3 cut(s)	662, 998, 1172
SmoI	CTYRAG	3 cut(s)	662, 998, 1172
SphI	GCATGC	2 cut(s)	216, 1305
Sse9I	AATT	5 cut(s)	135, 142, 435, 441, 1151
SsiI	CCGC	6 cut(s)	284, 341, 345, 667, 1049, 1502
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	3 cut(s)	256, 1317, 1504
StyI	CCWWGG	6 cut(s)	171, 195, 387, 887, 984, 1029
TaaI	ACNGT	6 cut(s)	184, 684, 741, 776, 1140, 1345
TaiI	ACGT	1 cut(s)	1499
TaqI	TCGA	3 cut(s)	234, 289, 925
TasI	AATT	5 cut(s)	135, 142, 435, 441, 1151
TatI	WGTACW	2 cut(s)	948, 1140
TauI	GCSGC	2 cut(s)	344, 347
TfiI	GAWTC	3 cut(s)	922, 980, 1509
Tru1I	TTAA	6 cut(s)	483, 519, 642, 759, 999, 1295
Tru9I	TTAA	6 cut(s)	483, 519, 642, 759, 999, 1295
TscAI	CASTG	3 cut(s)	746, 758, 1553
TseFI	GTSAC	3 cut(s)	94, 611, 907
TseI	GCWGC	1 cut(s)	650
Tsp45I	GTSAC	3 cut(s)	94, 611, 907
TspDTI	ATGAA	5 cut(s)	17, 141, 888, 950, 1260
TspGWI	ACGGA	2 cut(s)	833, 1437
TspRI	CASTG	3 cut(s)	746, 758, 1553
Vha464I	CTTAAG	1 cut(s)	998
VpaK11BI	GGWCC	1 cut(s)	602
VspI	ATTAAT	2 cut(s)	519, 759
XapI	RAATTY	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	523
XceI	RCATGY	4 cut(s)	216, 1305, 1470, 1536
XcmI	CCANNNNNNNNNTGG	2 cut(s)	894, 1249
XspI	CTAG	1 cut(s)	524
Zsp2I	ATGCAT	1 cut(s)	1253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.