Rh3DG105800

receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
8515288 .. 8521513
6226 bp
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UTR
Exon/CDS
Intron
Rh3DG105800.1

Sequence Viewer

Length: 1326 bp
ATGAAGGAAAAGATTGGATTTTTAGTGTCTGTTTGGTTTTTGCTATGTGGGTTTTGTGTGGGGAGGTTTGTGGTGGAGAAGAACAGCTTGAAAGTGACTTCCCCAAACTCATTGAAGGATGTTTATGAATGTGCAATTGGGAATTTTGGGGTTCCTCAGTATGGAGGAACCTTGGTTGGGACTGTATATTATCCCAAGGCTAATCAAAAAGCATGCAAGAGTTTTGAAGATTTCGATATCTCATTCAAATCAAAGCCTGGTGGATTACCTACCTTTCTTCTTGCGGATCGAGGAGATTGTTACTTCACATTGAAGGCTTGGAATGCACAAAATGGTGGAGCGGCCGCTATTCTTGTTGCAGATGACAGAACTGAACCATTGATTACCATGGACACTCCTGAGGAAGAAAAGGAAGATGCTGATTATCTGCAGAAAATTGCAATTCCCTCGGCCCTTATCAGCAAATCTTTGGGGGATAGCATTAAAAAAGCTCTATCTGATGGGGAGATGGTCAACATTAATCTAGACTGGACAGAGGCTCTTCCACATCCTGACGAGCGTGTTGAGTATGAGTTCTGGACAAACAGCAATGATGAGTGTGGACCAAAGTGTGACAGCCAGATTGATTTTGTGAAGAACTTTAAAGGAGCTGCTCAGGTACTTGAGCGGAAGGGGTACACACAGTTTACTCCACACTATATTACTTGGTACTGCCCAGACGCTTTTGTTTTGAGCAAACAGTGCCAGGCTCAGTGCATTAATCATGGGAGGTACTGTGCTCCAGATCCCGAACAGGATTTTAGTAAAGGTTATGATGGGAAAGATGTTGTGGTTCAAAATCTCCGTCAAGCTTGCTTCTATAAAGTGGCCAATGAAAGTGGAAGGCCATGGCTTTGGTGGGACTATGTGACTGACTTTGCGATTCGATGCCCAATGAAAGAGAAAAAGTACACTTCTGAGTGTGCAAATCAAGTTATTGAATCCTTGGGTGTTGATCTTAAGAAGATAGAGAAATGTATTGGGGATCCTAAGGCAAATGAGGAGAATGCGGTTCTAAAGGCTGAACAGGATGCACAGATTGGCAAGGGCTCCCGTGGAGATGTTACCATATTGCCAACTCTTATTATAAACAACAGACAGTACAGAGGAAAATTAGCCAAAGGAGCTGTTCTCAAGGCCATCTGTGCTGGTTTTCAAGAGACTACTGAGCCTGCAGTGTGTTTGAGTGAAGAAGTGGAAACCAATGAATGCCTGGAAAACAATGGAGGTTGCTGGCAGGACAAAGCTTCTAACTTAACTGCATGCAGGGTATCCCAATTTTCATAG

Protein Analysis

441

Amino Acids

49.13

Weight (kDa)

5.09

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 60 - 161 5.2e-13 PA domain
VSR_TRX PF25011 188 - 395 2.1e-105 Vacuolar sorting receptor thioredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1127
AccBSI CCGCTC 2 cut(s) 341, 667
AciI CCGC 5 cut(s) 284, 341, 345, 667, 1049
AclWI GGATC 4 cut(s) 294, 779, 1019, 1032
AcoI YGGCCR 2 cut(s) 342, 867
AcsI RAATTY 1 cut(s) 142
AfaI GTAC 6 cut(s) 660, 677, 710, 773, 950, 1142
AfiI CCNNNNNNNGG 2 cut(s) 161, 177
AflII CTTAAG 1 cut(s) 998
AgsI TTSAA 8 cut(s) 91, 115, 227, 247, 313, 836, 980, 1196
AjnI CCWGG 3 cut(s) 256, 744, 1251
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AluBI AGCT 6 cut(s) 87, 491, 650, 851, 1166, 1286
AluI AGCT 6 cut(s) 87, 491, 650, 851, 1166, 1286
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 1 cut(s) 1193
AlwI GGATC 4 cut(s) 294, 779, 1019, 1032
AoxI GGCC 5 cut(s) 342, 450, 867, 884, 1176
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 1 cut(s) 142
ArsI GACNNNNNNTTYG 2 cut(s) 829, 861
AseI ATTAAT 2 cut(s) 519, 759
AspS9I GGNCC 2 cut(s) 451, 602
AvaII GGWCC 1 cut(s) 602
AxyI CCTNAGG 2 cut(s) 399, 1029
BalI TGGCCA 1 cut(s) 869
BamHI GGATCC 1 cut(s) 1024
BanII GRGCYC 1 cut(s) 1091
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 1 cut(s) 637
BccI CCATC 4 cut(s) 494, 502, 809, 1187
BcgI CGANNNNNNTGC 2 cut(s) 429, 463
BciT130I CCWGG 3 cut(s) 258, 746, 1253
BciVI GTATCC 1 cut(s) 1321
BcoDI GTCTC 1 cut(s) 1193
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 2 cut(s) 428, 1212
BfrI CTTAAG 1 cut(s) 998
BfuI GTATCC 1 cut(s) 1321
BisI GCNGC 3 cut(s) 342, 345, 651
BlsI GCNGC 3 cut(s) 343, 346, 652
Bme1390I CCNGG 3 cut(s) 258, 746, 1253
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 2 cut(s) 451, 602
BmiI GGNNCC 4 cut(s) 153, 169, 1026, 1090
BmrFI CCNGG 3 cut(s) 258, 746, 1253
BmsI GCATC 3 cut(s) 406, 917, 1060
BplI GAGNNNNNCTC 2 cut(s) 1155, 1187
BpmI CTGGAG 1 cut(s) 765
Bpu10I CCTNAGC 1 cut(s) 654
BpuEI CTTGAG 2 cut(s) 683, 1157
BsaJI CCNNGG 7 cut(s) 171, 195, 387, 447, 887, 984, 1093
BsaXI ACNNNNNCTCC 2 cut(s) 760, 790
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 177
Bse1I ACTGG 1 cut(s) 533
Bse21I CCTNAGG 2 cut(s) 399, 1029
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 3 cut(s) 258, 746, 1253
BseDI CCNNGG 7 cut(s) 171, 195, 387, 447, 887, 984, 1093
BseGI GGATG 3 cut(s) 124, 547, 1075
BseLI CCNNNNNNNGG 2 cut(s) 161, 177
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 6 cut(s) 170, 390, 668, 764, 948, 1197
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 2 cut(s) 306, 1055
BseX3I CGGCCG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 637
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 5 cut(s) 344, 452, 869, 886, 1178
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 781
BslFI GGGAC 2 cut(s) 193, 914
BslI CCNNNNNNNGG 2 cut(s) 161, 177
BsmAI GTCTC 1 cut(s) 1193
BsmFI GGGAC 2 cut(s) 193, 914
BsmI GAATGC 3 cut(s) 328, 1051, 1253
BsnI GGCC 5 cut(s) 344, 452, 869, 886, 1178
Bsp1286I GDGCHC 2 cut(s) 781, 1091
Bsp143I GATC 4 cut(s) 286, 784, 994, 1024
Bsp19I CCATGG 2 cut(s) 387, 887
BspACI CCGC 5 cut(s) 284, 341, 345, 667, 1049
BspANI GGCC 5 cut(s) 344, 452, 869, 886, 1178
BspCNI CTCAG 6 cut(s) 169, 391, 667, 763, 949, 1198
BspLI GGNNCC 4 cut(s) 153, 169, 1026, 1090
BspMAI CTGCAG 2 cut(s) 432, 1216
BspPI GGATC 4 cut(s) 294, 779, 1019, 1032
BspQI GCTCTTC 1 cut(s) 546
BspTI CTTAAG 1 cut(s) 998
BsrBI CCGCTC 2 cut(s) 341, 667
BsrDI GCAATG 1 cut(s) 595
BsrI ACTGG 1 cut(s) 533
BssECI CCNNGG 7 cut(s) 171, 195, 387, 447, 887, 984, 1093
BssMI GATC 4 cut(s) 286, 784, 994, 1024
BssT1I CCWWGG 5 cut(s) 171, 195, 387, 887, 984
Bst2UI CCWGG 3 cut(s) 258, 746, 1253
Bst4CI ACNGT 5 cut(s) 184, 684, 741, 776, 1140
Bst6I CTCTTC 1 cut(s) 546
BstAFI CTTAAG 1 cut(s) 998
BstAPI GCANNNNNTGC 1 cut(s) 741
BstC8I GCNNGC 5 cut(s) 214, 853, 1212, 1274, 1303
BstDEI CTNAG 7 cut(s) 156, 399, 654, 750, 957, 1029, 1206
BstDSI CCRYGG 3 cut(s) 387, 887, 1093
BstF5I GGATG 3 cut(s) 124, 547, 1075
BstKTI GATC 4 cut(s) 289, 787, 997, 1027
BstMAI GTCTC 1 cut(s) 1193
BstMBI GATC 4 cut(s) 286, 784, 994, 1024
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 4 cut(s) 323, 741, 1163, 1184
BstNI CCWGG 3 cut(s) 258, 746, 1253
BstNSI RCATGY 2 cut(s) 216, 1305
BstSCI CCNGG 3 cut(s) 256, 744, 1251
BstSFI CTRYAG 2 cut(s) 428, 1212
BstV1I GCAGC 1 cut(s) 637
BstX2I RGATCY 2 cut(s) 784, 1024
BstXI CCANNNNNNTGG 1 cut(s) 894
BstYI RGATCY 2 cut(s) 784, 1024
BstZI CGGCCG 1 cut(s) 342
Bsu36I CCTNAGG 2 cut(s) 399, 1029
BsuI GTATCC 1 cut(s) 1321
BsuRI GGCC 5 cut(s) 344, 452, 869, 886, 1178
BtgI CCRYGG 3 cut(s) 387, 887, 1093
BtsCI GGATG 3 cut(s) 124, 547, 1075
BtsI GCAGTG 1 cut(s) 1221
BtsIMutI CAGTG 3 cut(s) 746, 758, 1221
Cac8I GCNNGC 5 cut(s) 214, 853, 1212, 1274, 1303
CciNI GCGGCCGC 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 451, 602
CseI GACGC 1 cut(s) 728
Csp6I GTAC 6 cut(s) 659, 676, 709, 772, 949, 1141
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviAII CATG 5 cut(s) 213, 388, 764, 888, 1302
CviQI GTAC 6 cut(s) 659, 676, 709, 772, 949, 1141
DdeI CTNAG 7 cut(s) 156, 399, 654, 750, 957, 1029, 1206
DpnI GATC 4 cut(s) 288, 786, 996, 1026
DpnII GATC 4 cut(s) 286, 784, 994, 1024
DraI TTTAAA 1 cut(s) 643
EaeI YGGCCR 2 cut(s) 342, 867
EagI CGGCCG 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
EclXI CGGCCG 1 cut(s) 342
Eco130I CCWWGG 5 cut(s) 171, 195, 387, 887, 984
Eco24I GRGCYC 1 cut(s) 1091
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 602
Eco52I CGGCCG 1 cut(s) 342
Eco81I CCTNAGG 2 cut(s) 399, 1029
EcoRII CCWGG 3 cut(s) 256, 744, 1251
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 5 cut(s) 171, 195, 387, 887, 984
EcoT38I GRGCYC 1 cut(s) 1091
ErhI CCWWGG 5 cut(s) 171, 195, 387, 887, 984
FaeI CATG 5 cut(s) 216, 391, 767, 891, 1305
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 2 cut(s) 193, 914
FatI CATG 5 cut(s) 212, 387, 763, 887, 1301
Fnu4HI GCNGC 3 cut(s) 342, 345, 651
FokI GGATG 3 cut(s) 131, 534, 1082
FriOI GRGCYC 1 cut(s) 1091
Fsp4HI GCNGC 3 cut(s) 342, 345, 651
FspBI CTAG 1 cut(s) 524
GluI GCNGC 3 cut(s) 342, 345, 651
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 5 cut(s) 344, 452, 869, 886, 1178
HgaI GACGC 1 cut(s) 728
Hin1II CATG 5 cut(s) 216, 391, 767, 891, 1305
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 2 cut(s) 849, 1284
HinfI GANTC 2 cut(s) 922, 980
Hpy166II GTNNAC 5 cut(s) 514, 602, 678, 687, 951
Hpy188I TCNGA 2 cut(s) 499, 958
Hpy188III TCNNGA 7 cut(s) 398, 524, 551, 577, 782, 788, 1196
Hpy8I GTNNAC 5 cut(s) 514, 602, 678, 687, 951
HpyAV CCTTC 4 cut(s) 109, 307, 664, 876
HpyCH4III ACNGT 5 cut(s) 184, 684, 741, 776, 1140
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 741, 1163, 1184
HpyF3I CTNAG 7 cut(s) 156, 399, 654, 750, 957, 1029, 1206
Hsp92II CATG 5 cut(s) 216, 391, 767, 891, 1305
Kzo9I GATC 4 cut(s) 286, 784, 994, 1024
LguI GCTCTTC 1 cut(s) 546
LmnI GCTCC 5 cut(s) 338, 647, 784, 1094, 1163
Lsp1109I GCAGC 1 cut(s) 637
LweI GCATC 3 cut(s) 406, 917, 1060
MaeI CTAG 1 cut(s) 524
MaeIII GTNAC 5 cut(s) 94, 299, 611, 907, 1102
MalI GATC 4 cut(s) 288, 786, 996, 1026
MbiI CCGCTC 2 cut(s) 341, 667
MboI GATC 4 cut(s) 286, 784, 994, 1024
MboII GAAGA 9 cut(s) 91, 239, 269, 416, 425, 533, 646, 1015, 1241
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 784, 1024
MhlI GDGCHC 2 cut(s) 781, 1091
MlsI TGGCCA 1 cut(s) 869
MluCI AATT 6 cut(s) 135, 142, 435, 441, 1151, 1316
MluNI TGGCCA 1 cut(s) 869
Mox20I TGGCCA 1 cut(s) 869
MscI TGGCCA 1 cut(s) 869
MseI TTAA 6 cut(s) 483, 519, 642, 759, 999, 1295
Msp20I TGGCCA 1 cut(s) 869
MspCI CTTAAG 1 cut(s) 998
MspR9I CCNGG 3 cut(s) 258, 746, 1253
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 3 cut(s) 328, 1051, 1253
MvaI CCWGG 3 cut(s) 258, 746, 1253
MwoI GCNNNNNNNGC 4 cut(s) 323, 741, 1163, 1184
NcoI CCATGG 2 cut(s) 387, 887
NdeII GATC 4 cut(s) 286, 784, 994, 1024
NlaIII CATG 5 cut(s) 216, 391, 767, 891, 1305
NlaIV GGNNCC 4 cut(s) 153, 169, 1026, 1090
NmeAIII GCCGAG 1 cut(s) 428
NmuCI GTSAC 3 cut(s) 94, 611, 907
NotI GCGGCCGC 1 cut(s) 342
NspI RCATGY 2 cut(s) 216, 1305
PaeI GCATGC 2 cut(s) 216, 1305
PciSI GCTCTTC 1 cut(s) 546
PctI GAATGC 3 cut(s) 328, 1051, 1253
PfeI GAWTC 2 cut(s) 922, 980
PkrI GCNGC 3 cut(s) 343, 346, 652
PshBI ATTAAT 2 cut(s) 519, 759
PsiI TTATAA 1 cut(s) 1127
Psp6I CCWGG 3 cut(s) 256, 744, 1251
PspGI CCWGG 3 cut(s) 256, 744, 1251
PspN4I GGNNCC 4 cut(s) 153, 169, 1026, 1090
PspPI GGNCC 2 cut(s) 451, 602
PstI CTGCAG 2 cut(s) 432, 1216
PsuI RGATCY 2 cut(s) 784, 1024
RsaI GTAC 6 cut(s) 660, 677, 710, 773, 950, 1142
RsaNI GTAC 6 cut(s) 659, 676, 709, 772, 949, 1141
SapI GCTCTTC 1 cut(s) 546
SaqAI TTAA 6 cut(s) 483, 519, 642, 759, 999, 1295
SatI GCNGC 3 cut(s) 342, 345, 651
Sau3AI GATC 4 cut(s) 286, 784, 994, 1024
Sau96I GGNCC 2 cut(s) 451, 602
ScrFI CCNGG 3 cut(s) 258, 746, 1253
SduI GDGCHC 2 cut(s) 781, 1091
SfaNI GCATC 3 cut(s) 406, 917, 1060
SfcI CTRYAG 2 cut(s) 428, 1212
SinI GGWCC 1 cut(s) 602
SmlI CTYRAG 3 cut(s) 662, 998, 1172
SmoI CTYRAG 3 cut(s) 662, 998, 1172
SphI GCATGC 2 cut(s) 216, 1305
Sse9I AATT 6 cut(s) 135, 142, 435, 441, 1151, 1316
SsiI CCGC 5 cut(s) 284, 341, 345, 667, 1049
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 3 cut(s) 256, 744, 1251
StyI CCWWGG 5 cut(s) 171, 195, 387, 887, 984
TaaI ACNGT 5 cut(s) 184, 684, 741, 776, 1140
TaqI TCGA 3 cut(s) 234, 289, 925
TasI AATT 6 cut(s) 135, 142, 435, 441, 1151, 1316
TatI WGTACW 2 cut(s) 948, 1140
TauI GCSGC 2 cut(s) 344, 347
TfiI GAWTC 2 cut(s) 922, 980
Tru1I TTAA 6 cut(s) 483, 519, 642, 759, 999, 1295
Tru9I TTAA 6 cut(s) 483, 519, 642, 759, 999, 1295
TscAI CASTG 3 cut(s) 746, 758, 1221
TseFI GTSAC 3 cut(s) 94, 611, 907
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 3 cut(s) 94, 611, 907
TspDTI ATGAA 6 cut(s) 17, 141, 888, 950, 1260, 1311
TspGWI ACGGA 1 cut(s) 833
TspRI CASTG 3 cut(s) 746, 758, 1221
Vha464I CTTAAG 1 cut(s) 998
VpaK11BI GGWCC 1 cut(s) 602
VspI ATTAAT 2 cut(s) 519, 759
XapI RAATTY 1 cut(s) 142
XbaI TCTAGA 1 cut(s) 523
XceI RCATGY 2 cut(s) 216, 1305
XcmI CCANNNNNNNNNTGG 2 cut(s) 894, 1249
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.