Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004290

Physical Location & Seq

Genomic Coordinates Reverse (-)

2244976 .. 2246341

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG015600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAGGAAACGATTGGATTTTTAGTGTTCGTTTGGTTTTTGCTATGTGGGTTTTGTGTGGGGAGGTTTGTGGTGGAGAAGAACAGCTTGAAAGTGACTTCCCCAAACTCATTGAAGAATGTTTATGAATGTGCAATTGGGGATTTTGGGGTTCCTCAGTATGGAGGAACCTTGGTTGGGACTGTGTTTTATCCCAAGGCTAATCGAAAAGCATGCAGGAGTTTCGGAGATTTTGGTATCTCATTCAAATCAATGCCTGGTGGATTACCTACCGTTATTCTTGCGGATCGAGGAGATTGTTACTTCGATTTGAAGGCTTGGAATGCACAAAGTGGTGGAGCGGCCGCTATTCTTGTTGCAGATGACAGAATTGAACCATTGATTACCATGGACACTCCTGAAGATCTTCCTGATTATCTGCAGAATATTACAATTCCCTCGGCCCTTATCAGCAAATCTTTGGGGGATAGCATTAAAAAAGCTCTATCTGATTGGGAAATGGTCAGCATTAATCTAGACTGGACAGAGGCTCTTCCACATCCTGATGAGCGTGTTGAGTTTGAGTTCTGGACAAACAGCAATGGTGAGTGCGGACCAAACTGTGACAACCAGATTGATTTTGTGAAGAACTTTAAAGGAGCTGCTCAGGTACTTGAGCGGAAGGGGTACACAGTTTACTCCACACTATATTACTTGGTACTGCCCAAAAGCTTTTGTTTTGAGCAAACAGTGCAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005048 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005794 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0007034 GO:0008104 GO:0008150 GO:0009940 GO:0010008 GO:0010209 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030135 GO:0030136 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA cEGF

Protein Analysis

246

Amino Acids

27.29

Weight (kDa)

4.84

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PA	PF02225	61 - 158	7e-12	PA domain
VSR_TRX	PF25011	185 - 233	4e-15	Vacuolar sorting receptor thioredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004290)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30290 AT2G30290
fragaria_vesca	FvH4_6g09810 FvH4_6g09810 FvH4_6g09810
malus_domestica	MD04G1175100.v1.1 MD12G1188800.v1.1
prunus_persica	Prupe.6G294400_v2.0.a1 Prupe.6G294400_v2.0.a1
pyrus_communis	pycom04g15450 pycom12g17630
rosa_chinensis	RchiOBHm_Chr3g0460421 RchiOBHm_Chr6g0252231
rosa_laevigata	RLG00000025013
rosa_multiflora	Rmu_co8220956.1_g000001 Rmu_co8306627.1_g000001 Rmu_sc0004267.1_g000012 Rmu_sc0006252.1_g000025 Rmu_sc0009799.1_g000013 Rmu_sc0021028.1_g000001 Rmu_sc0025932.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419500 Rroxscaffold_7G00216220
rosa_rugosa	Rorug03G0042500
rosa_samantha	Rh3AG100500 Rh3BG104500 Rh3CG106300 Rh3DG105800 Rh6AG020100 Rh6BG015600
rosa_wichuraiana	Rw3G008550 Rw6G001650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	341, 658
AciI	CCGC	5 cut(s)	284, 341, 345, 591, 658
AclWI	GGATC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	420
AdeI	CACNNNGTG	1 cut(s)	332
AfaI	GTAC	3 cut(s)	651, 668, 699
AfiI	CCNNNNNNNGG	2 cut(s)	161, 177
AgsI	TTSAA	5 cut(s)	91, 115, 247, 313, 374
AjnI	CCWGG	1 cut(s)	256
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	4 cut(s)	87, 482, 641, 711
AluI	AGCT	4 cut(s)	87, 482, 641, 711
AlwI	GGATC	1 cut(s)	294
AoxI	GGCC	2 cut(s)	342, 441
ApeKI	GCWGC	1 cut(s)	641
AseI	ATTAAT	1 cut(s)	510
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	2 cut(s)	442, 593
AsuHPI	GGTGA	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	593
BbvI	GCAGC	1 cut(s)	628
BcgI	CGANNNNNNTGC	4 cut(s)	195, 205, 229, 239
BciT130I	CCWGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	419
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	3 cut(s)	342, 345, 642
BlsI	GCNGC	3 cut(s)	343, 346, 643
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	593
BmgT120I	GGNCC	2 cut(s)	442, 593
BmiI	GGNNCC	2 cut(s)	153, 169
BmrFI	CCNGG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	674
BsaJI	CCNNGG	4 cut(s)	171, 195, 387, 438
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 177
Bse1I	ACTGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	586
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	4 cut(s)	171, 195, 387, 438
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	161, 177
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	2 cut(s)	170, 659
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	306
BseX3I	CGGCCG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	628
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	344, 443
BsiEI	CGRYCG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	161, 177
BsmFI	GGGAC	1 cut(s)	193
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	2 cut(s)	344, 443
Bsp143I	GATC	2 cut(s)	286, 403
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	5 cut(s)	284, 341, 345, 591, 658
BspANI	GGCC	2 cut(s)	344, 443
BspCNI	CTCAG	2 cut(s)	169, 658
BspLI	GGNNCC	2 cut(s)	153, 169
BspMAI	CTGCAG	1 cut(s)	423
BspPI	GGATC	1 cut(s)	294
BspQI	GCTCTTC	1 cut(s)	537
BsrBI	CCGCTC	2 cut(s)	341, 658
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	4 cut(s)	171, 195, 387, 438
BssMI	GATC	2 cut(s)	286, 403
BssT1I	CCWWGG	3 cut(s)	171, 195, 387
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	5 cut(s)	184, 274, 602, 673, 730
Bst6I	CTCTTC	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	730
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	2 cut(s)	156, 645
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	2 cut(s)	289, 406
BstMBI	GATC	2 cut(s)	286, 403
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	2 cut(s)	323, 730
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	419
BstV1I	GCAGC	1 cut(s)	628
BstX2I	RGATCY	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	344, 443
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	1 cut(s)	214
CciNI	GCGGCCGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	442, 593
Csp6I	GTAC	3 cut(s)	650, 667, 698
CviAII	CATG	2 cut(s)	213, 388
CviQI	GTAC	3 cut(s)	650, 667, 698
DdeI	CTNAG	2 cut(s)	156, 645
DpnI	GATC	2 cut(s)	288, 405
DpnII	GATC	2 cut(s)	286, 403
DraI	TTTAAA	1 cut(s)	634
DraIII	CACNNNGTG	1 cut(s)	332
EaeI	YGGCCR	1 cut(s)	342
EagI	CGGCCG	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
EclXI	CGGCCG	1 cut(s)	342
Eco130I	CCWWGG	3 cut(s)	171, 195, 387
Eco47I	GGWCC	1 cut(s)	593
Eco52I	CGGCCG	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	3 cut(s)	171, 195, 387
ErhI	CCWWGG	3 cut(s)	171, 195, 387
FaeI	CATG	2 cut(s)	216, 391
FaiI	YATR	6 cut(s)	46, 126, 162, 214, 389, 688
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	212, 387
Fnu4HI	GCNGC	3 cut(s)	342, 345, 642
FokI	GGATG	1 cut(s)	525
Fsp4HI	GCNGC	3 cut(s)	342, 345, 642
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	3 cut(s)	342, 345, 642
HaeIII	GGCC	2 cut(s)	344, 443
Hin1II	CATG	2 cut(s)	216, 391
HindIII	AAGCTT	1 cut(s)	709
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	2 cut(s)	669, 676
Hpy188I	TCNGA	2 cut(s)	227, 490
Hpy188III	TCNNGA	5 cut(s)	398, 410, 515, 542, 568
Hpy8I	GTNNAC	2 cut(s)	669, 676
HpyAV	CCTTC	2 cut(s)	307, 655
HpyCH4III	ACNGT	5 cut(s)	184, 274, 602, 673, 730
HpyCH4V	TGCA	6 cut(s)	134, 216, 326, 359, 421, 733
HpyF10VI	GCNNNNNNNGC	2 cut(s)	323, 730
HpyF3I	CTNAG	2 cut(s)	156, 645
Hsp92II	CATG	2 cut(s)	216, 391
Kzo9I	GATC	2 cut(s)	286, 403
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	2 cut(s)	338, 638
Lsp1109I	GCAGC	1 cut(s)	628
MaeI	CTAG	1 cut(s)	515
MaeIII	GTNAC	3 cut(s)	94, 299, 602
MalI	GATC	2 cut(s)	288, 405
MbiI	CCGCTC	2 cut(s)	341, 658
MboI	GATC	2 cut(s)	286, 403
MboII	GAAGA	6 cut(s)	91, 127, 398, 413, 524, 637
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	3 cut(s)	135, 369, 432
MnlI	CCTC	6 cut(s)	57, 158, 165, 284, 448, 520
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	3 cut(s)	474, 510, 633
MslI	CAYNNNNRTG	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	323, 730
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	2 cut(s)	286, 403
NlaIII	CATG	2 cut(s)	216, 391
NlaIV	GGNNCC	2 cut(s)	153, 169
NmeAIII	GCCGAG	1 cut(s)	419
NmuCI	GTSAC	2 cut(s)	94, 602
NotI	GCGGCCGC	1 cut(s)	342
NspI	RCATGY	1 cut(s)	216
PaeI	GCATGC	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	537
PctI	GAATGC	1 cut(s)	328
PdmI	GAANNNNTTC	1 cut(s)	405
PkrI	GCNGC	3 cut(s)	343, 346, 643
PshBI	ATTAAT	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	153, 169
PspPI	GGNCC	2 cut(s)	442, 593
PstI	CTGCAG	1 cut(s)	423
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	3 cut(s)	651, 668, 699
RsaNI	GTAC	3 cut(s)	650, 667, 698
RseI	CAYNNNNRTG	1 cut(s)	543
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	474, 510, 633
SatI	GCNGC	3 cut(s)	342, 345, 642
Sau3AI	GATC	2 cut(s)	286, 403
Sau96I	GGNCC	2 cut(s)	442, 593
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	8 cut(s)	68, 89, 173, 271, 484, 643, 651, 713
SfcI	CTRYAG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	593
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SphI	GCATGC	1 cut(s)	216
Sse9I	AATT	3 cut(s)	135, 369, 432
SsiI	CCGC	5 cut(s)	284, 341, 345, 591, 658
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	3 cut(s)	171, 195, 387
TaaI	ACNGT	5 cut(s)	184, 274, 602, 673, 730
TaqI	TCGA	3 cut(s)	205, 289, 306
TasI	AATT	3 cut(s)	135, 369, 432
TauI	GCSGC	2 cut(s)	344, 347
Tru1I	TTAA	3 cut(s)	474, 510, 633
Tru9I	TTAA	3 cut(s)	474, 510, 633
TscAI	CASTG	1 cut(s)	735
TseFI	GTSAC	2 cut(s)	94, 602
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	2 cut(s)	94, 602
TspDTI	ATGAA	2 cut(s)	17, 141
TspRI	CASTG	1 cut(s)	735
VpaK11BI	GGWCC	1 cut(s)	593
VspI	ATTAAT	1 cut(s)	510
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.