Rorug03G0042500

Transmembrane protein 87B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003014
Physical Location & Seq
Reverse (-)
3288955 .. 3291967
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0042500.1

Sequence Viewer

Length: 936 bp
ATGGCAGCTTCAGGTCCAGGAGAAGCTGTGTCGCGACCTCTGCTCCCAATTCCAATTCCAATTCCACAGGGCTCGAATTCAACCCTAGGCGAAGCGATTTCGGGTCCCAGATTCTACAGCTGGCTCGGCCAGTGCCATGGGTTCTGGCACAATTTGGCCCTGATCACGTCCTCGCTTCTCTTTGCTCTGTACTTGGCCTATCAATCAAGGAAGAGCTTTTCGAAGCTCTATCATGGCCGCTCGTATATTATGATGGCCTACTATGGCTGCCTCTGGCTCGTTAGCTTGCTCAATCTCGCTTGGTGCTTTCTTCAGGCATGGGAATGCACACCTGATAAAGAAATGGCATGGAATGTCTTATCTTTGTTCACAACTTCCGGAATGTTATTTTTGGAAGTAAGCTTGCTGGCATTTTTACTCCAAGGGAATTATGCAAGTGGACTGGAAGCGTTGACACGAACTTTTGTTATCTCAGGGATCCTCGTTGGTTTGGATTTACTTCTGAAGGCAATTTATATGTTTGGATTTGGAATTCCGCTGTTTGTCGACGACACTGATCATACACATCAGATGAAGTGGAACTTGTGGTCTGTCCATAGGCTAGTACTAACTGCAGTTTATGGTTTCATATTGTTCATGTACCATTCCAAGTGGAGAGAAAGACTACCCGCGAGACCTGCATTCTACAATTATACAGCTATCATGTTTCTGATGAATGTACTAGCAATGTTTGCTTGTGGACTTACGGGAAATGGAGGAGCTGGATTTGGGTTTTGGTTATATGGCGCCACTATTGTCTGTTACCATGCCTTCTATCTTCCTCTTTTATATGTAACATTTCTGGCAGACTTCTTCCAGGAGGATGATTTACATTTGGAGAATGTATATTATTCAGAGATGAAAGATGCTGGTTTCTTTGATGCTGATTGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

311

Amino Acids

35.35

Weight (kDa)

5.81

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_40 PF10160 44 - 298 1.5e-119 Predicted membrane protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 685
AccB1I GGYRCC 1 cut(s) 785
AccBSI CCGCTC 1 cut(s) 240
AccI GTMKAC 1 cut(s) 546
AccII CGCG 2 cut(s) 34, 671
AccIII TCCGGA 1 cut(s) 377
AciI CCGC 3 cut(s) 238, 536, 669
AclWI GGATC 2 cut(s) 472, 485
AcoI YGGCCR 2 cut(s) 127, 235
AcsI RAATTY 2 cut(s) 76, 531
AcuI CTGAAG 2 cut(s) 296, 524
AcyI GRCGYC 1 cut(s) 786
AfaI GTAC 4 cut(s) 191, 606, 641, 720
AgsI TTSAA 1 cut(s) 81
AjiI CACGTC 1 cut(s) 168
AjnI CCWGG 2 cut(s) 16, 855
AluBI AGCT 9 cut(s) 8, 26, 120, 216, 226, 285, 402, 698, 761
AluI AGCT 9 cut(s) 8, 26, 120, 216, 226, 285, 402, 698, 761
Alw26I GTCTC 1 cut(s) 667
AlwI GGATC 2 cut(s) 472, 485
Aor13HI TCCGGA 1 cut(s) 377
AoxI GGCC 5 cut(s) 127, 156, 195, 235, 255
ApeKI GCWGC 2 cut(s) 5, 267
ApoI RAATTY 2 cut(s) 76, 531
AspA2I CCTAGG 1 cut(s) 85
AspLEI GCGC 1 cut(s) 788
AspS9I GGNCC 3 cut(s) 14, 104, 157
AsuII TTCGAA 1 cut(s) 221
AvaII GGWCC 2 cut(s) 14, 104
AvrII CCTAGG 1 cut(s) 85
BamHI GGATCC 1 cut(s) 477
BanI GGYRCC 1 cut(s) 785
BanII GRGCYC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 17, 254
BccI CCATC 1 cut(s) 247
BciT130I CCWGG 2 cut(s) 18, 857
BclI TGATCA 2 cut(s) 162, 556
BcoDI GTCTC 1 cut(s) 667
BfaI CTAG 3 cut(s) 86, 602, 722
BfmI CTRYAG 2 cut(s) 115, 612
BfoI RGCGCY 1 cut(s) 789
BfuAI ACCTGC 1 cut(s) 685
BisI GCNGC 3 cut(s) 6, 238, 268
BlnI CCTAGG 1 cut(s) 85
BlsI GCNGC 3 cut(s) 7, 239, 269
BmcAI AGTACT 1 cut(s) 606
Bme1390I CCNGG 2 cut(s) 18, 857
Bme18I GGWCC 2 cut(s) 14, 104
BmgBI CACGTC 1 cut(s) 168
BmgT120I GGNCC 3 cut(s) 14, 104, 157
BmiI GGNNCC 4 cut(s) 105, 106, 479, 787
BmrFI CCNGG 2 cut(s) 18, 857
BmsI GCATC 2 cut(s) 895, 910
Bpu14I TTCGAA 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 667
BsaJI CCNNGG 3 cut(s) 85, 136, 421
BsaWI WCCGGW 1 cut(s) 377
BsaXI ACNNNNNCTCC 4 cut(s) 12, 27, 42, 57
Bse1I ACTGG 2 cut(s) 130, 447
Bse3DI GCAATG 1 cut(s) 732
BseAI TCCGGA 1 cut(s) 377
BseBI CCWGG 2 cut(s) 18, 857
BseDI CCNNGG 3 cut(s) 85, 136, 421
BseGI GGATG 1 cut(s) 868
BseMI GCAATG 1 cut(s) 732
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 2 cut(s) 130, 447
BseRI GAGGAG 1 cut(s) 771
BseXI GCAGC 2 cut(s) 17, 254
Bsh1236I CGCG 2 cut(s) 34, 671
BshFI GGCC 5 cut(s) 129, 158, 197, 237, 257
BshNI GGYRCC 1 cut(s) 785
BsiSI CCGG 1 cut(s) 378
BslFI GGGAC 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 667
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 2 cut(s) 329, 680
BsnI GGCC 5 cut(s) 129, 158, 197, 237, 257
Bso31I GGTCTC 1 cut(s) 667
Bsp119I TTCGAA 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 377
Bsp143I GATC 3 cut(s) 162, 477, 556
Bsp19I CCATGG 1 cut(s) 136
Bsp68I TCGCGA 1 cut(s) 34
BspACI CCGC 3 cut(s) 238, 536, 669
BspANI GGCC 5 cut(s) 129, 158, 197, 237, 257
BspCNI CTCAG 1 cut(s) 485
BspEI TCCGGA 1 cut(s) 377
BspFNI CGCG 2 cut(s) 34, 671
BspLI GGNNCC 4 cut(s) 105, 106, 479, 787
BspMAI CTGCAG 1 cut(s) 616
BspMI ACCTGC 1 cut(s) 685
BspPI GGATC 2 cut(s) 472, 485
BspQI GCTCTTC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 785
BspTNI GGTCTC 1 cut(s) 667
BsrBI CCGCTC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 732
BsrI ACTGG 2 cut(s) 130, 447
BssECI CCNNGG 3 cut(s) 85, 136, 421
BssMI GATC 3 cut(s) 162, 477, 556
BssNI GRCGYC 1 cut(s) 786
BssT1I CCWWGG 3 cut(s) 85, 136, 421
Bst2UI CCWGG 2 cut(s) 18, 857
Bst6I CTCTTC 1 cut(s) 206
BstACI GRCGYC 1 cut(s) 786
BstAPI GCANNNNNTGC 1 cut(s) 731
BstBI TTCGAA 1 cut(s) 221
BstC8I GCNNGC 4 cut(s) 122, 287, 404, 408
BstDEI CTNAG 1 cut(s) 472
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 868
BstFNI CGCG 2 cut(s) 34, 671
BstH2I RGCGCY 1 cut(s) 789
BstHHI GCGC 1 cut(s) 788
BstKTI GATC 3 cut(s) 165, 480, 559
BstMAI GTCTC 1 cut(s) 667
BstMBI GATC 3 cut(s) 162, 477, 556
BstMWI GCNNNNNNNGC 4 cut(s) 40, 126, 677, 731
BstNI CCWGG 2 cut(s) 18, 857
BstSCI CCNGG 2 cut(s) 16, 855
BstSFI CTRYAG 2 cut(s) 115, 612
BstUI CGCG 2 cut(s) 34, 671
BstV1I GCAGC 2 cut(s) 17, 254
BstX2I RGATCY 1 cut(s) 477
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 1 cut(s) 477
BsuRI GGCC 5 cut(s) 129, 158, 197, 237, 257
BtgI CCRYGG 1 cut(s) 136
BtrI CACGTC 1 cut(s) 168
BtsCI GGATG 1 cut(s) 868
BtsIMutI CAGTG 2 cut(s) 137, 552
BtuMI TCGCGA 1 cut(s) 34
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 4 cut(s) 122, 287, 404, 408
CfoI GCGC 1 cut(s) 788
Cfr13I GGNCC 3 cut(s) 14, 104, 157
Csp6I GTAC 4 cut(s) 190, 605, 640, 719
CviAII CATG 7 cut(s) 137, 233, 318, 348, 637, 703, 806
CviQI GTAC 4 cut(s) 190, 605, 640, 719
DdeI CTNAG 1 cut(s) 472
DinI GGCGCC 1 cut(s) 787
DpnI GATC 3 cut(s) 164, 479, 558
DpnII GATC 3 cut(s) 162, 477, 556
EaeI YGGCCR 2 cut(s) 127, 235
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 3 cut(s) 85, 136, 421
Eco24I GRGCYC 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 667
Eco47I GGWCC 2 cut(s) 14, 104
Eco57I CTGAAG 2 cut(s) 296, 524
EcoO109I RGGNCCY 1 cut(s) 104
EcoRI GAATTC 2 cut(s) 76, 531
EcoRII CCWGG 2 cut(s) 16, 855
EcoT14I CCWWGG 3 cut(s) 85, 136, 421
EcoT38I GRGCYC 1 cut(s) 74
EgeI GGCGCC 1 cut(s) 787
EheI GGCGCC 1 cut(s) 787
ErhI CCWWGG 3 cut(s) 85, 136, 421
FaeI CATG 7 cut(s) 140, 236, 321, 351, 640, 706, 809
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 1 cut(s) 90
FatI CATG 7 cut(s) 136, 232, 317, 347, 636, 702, 805
FauI CCCGC 1 cut(s) 676
FbaI TGATCA 2 cut(s) 162, 556
FblI GTMKAC 1 cut(s) 546
Fnu4HI GCNGC 3 cut(s) 6, 238, 268
FokI GGATG 1 cut(s) 875
FriOI GRGCYC 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 6, 238, 268
FspBI CTAG 3 cut(s) 86, 602, 722
GlaI GCGC 1 cut(s) 787
GluI GCNGC 3 cut(s) 6, 238, 268
HaeII RGCGCY 1 cut(s) 789
HaeIII GGCC 5 cut(s) 129, 158, 197, 237, 257
HapII CCGG 1 cut(s) 378
HhaI GCGC 1 cut(s) 788
Hin1I GRCGYC 1 cut(s) 786
Hin1II CATG 7 cut(s) 140, 236, 321, 351, 640, 706, 809
Hin6I GCGC 1 cut(s) 786
HinP1I GCGC 1 cut(s) 786
HincII GTYRAC 2 cut(s) 453, 547
HindII GTYRAC 2 cut(s) 453, 547
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 378
Hpy166II GTNNAC 5 cut(s) 369, 440, 453, 547, 740
Hpy188I TCNGA 4 cut(s) 504, 570, 711, 895
Hpy188III TCNNGA 2 cut(s) 33, 378
Hpy8I GTNNAC 5 cut(s) 369, 440, 453, 547, 740
Hpy99I CGWCG 1 cut(s) 551
HpyAV CCTTC 2 cut(s) 499, 820
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 4 cut(s) 327, 434, 614, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 40, 126, 677, 731
HpyF3I CTNAG 1 cut(s) 472
HpySE526I ACGT 1 cut(s) 167
Hsp92I GRCGYC 1 cut(s) 786
Hsp92II CATG 7 cut(s) 140, 236, 321, 351, 640, 706, 809
HspAI GCGC 1 cut(s) 786
KasI GGCGCC 1 cut(s) 785
KflI GGGWCCC 1 cut(s) 104
Kpn2I TCCGGA 1 cut(s) 377
Ksp22I TGATCA 2 cut(s) 162, 556
Kzo9I GATC 3 cut(s) 162, 477, 556
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 48, 758
Lsp1109I GCAGC 2 cut(s) 17, 254
LweI GCATC 2 cut(s) 895, 910
MaeI CTAG 3 cut(s) 86, 602, 722
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 800, 832
MalI GATC 3 cut(s) 164, 479, 558
MbiI CCGCTC 1 cut(s) 240
MboI GATC 3 cut(s) 162, 477, 556
MboII GAAGA 4 cut(s) 223, 302, 809, 844
MflI RGATCY 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 9 cut(s) 48, 54, 60, 76, 151, 427, 510, 531, 688
Mly113I GGCGCC 1 cut(s) 786
MnlI CCTC 7 cut(s) 48, 181, 281, 491, 749, 831, 853
MroI TCCGGA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 322
MspA1I CMGCKG 2 cut(s) 120, 538
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 2 cut(s) 18, 857
Mva1269I GAATGC 2 cut(s) 329, 680
MvaI CCWGG 2 cut(s) 18, 857
MvnI CGCG 2 cut(s) 34, 671
MwoI GCNNNNNNNGC 4 cut(s) 40, 126, 677, 731
NarI GGCGCC 1 cut(s) 786
NcoI CCATGG 1 cut(s) 136
NdeII GATC 3 cut(s) 162, 477, 556
NlaIII CATG 7 cut(s) 140, 236, 321, 351, 640, 706, 809
NlaIV GGNNCC 4 cut(s) 105, 106, 479, 787
NmeAIII GCCGAG 1 cut(s) 105
NruI TCGCGA 1 cut(s) 34
NspV TTCGAA 1 cut(s) 221
PciSI GCTCTTC 1 cut(s) 206
PctI GAATGC 2 cut(s) 329, 680
PfeI GAWTC 1 cut(s) 111
PfoI TCCNGGA 2 cut(s) 16, 855
PkrI GCNGC 3 cut(s) 7, 239, 269
PluTI GGCGCC 1 cut(s) 789
PpuMI RGGWCCY 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 2 cut(s) 16, 855
PspGI CCWGG 2 cut(s) 16, 855
PspN4I GGNNCC 4 cut(s) 105, 106, 479, 787
PspPI GGNCC 3 cut(s) 14, 104, 157
PspPPI RGGWCCY 1 cut(s) 104
PstI CTGCAG 1 cut(s) 616
PsuI RGATCY 1 cut(s) 477
PvuII CAGCTG 1 cut(s) 120
RruI TCGCGA 1 cut(s) 34
RsaI GTAC 4 cut(s) 191, 606, 641, 720
RsaNI GTAC 4 cut(s) 190, 605, 640, 719
RseI CAYNNNNRTG 1 cut(s) 322
SalI GTCGAC 1 cut(s) 545
SapI GCTCTTC 1 cut(s) 206
SatI GCNGC 3 cut(s) 6, 238, 268
Sau3AI GATC 3 cut(s) 162, 477, 556
Sau96I GGNCC 3 cut(s) 14, 104, 157
ScaI AGTACT 1 cut(s) 606
ScrFI CCNGG 2 cut(s) 18, 857
SduI GDGCHC 1 cut(s) 74
SfaNI GCATC 2 cut(s) 895, 910
SfcI CTRYAG 2 cut(s) 115, 612
SfoI GGCGCC 1 cut(s) 787
SfuI TTCGAA 1 cut(s) 221
SinI GGWCC 2 cut(s) 14, 104
SmiMI CAYNNNNRTG 1 cut(s) 322
Sse9I AATT 9 cut(s) 48, 54, 60, 76, 151, 427, 510, 531, 688
SsiI CCGC 3 cut(s) 238, 536, 669
SspDI GGCGCC 1 cut(s) 785
SspMI CTAG 3 cut(s) 86, 602, 722
StyD4I CCNGG 2 cut(s) 16, 855
StyI CCWWGG 3 cut(s) 85, 136, 421
TaiI ACGT 1 cut(s) 170
TaqI TCGA 3 cut(s) 74, 221, 546
TasI AATT 9 cut(s) 48, 54, 60, 76, 151, 427, 510, 531, 688
TatI WGTACW 3 cut(s) 189, 604, 718
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 111
TscAI CASTG 2 cut(s) 137, 559
TseI GCWGC 2 cut(s) 5, 267
TspDTI ATGAA 5 cut(s) 587, 616, 625, 728, 914
TspRI CASTG 2 cut(s) 137, 559
VpaK11BI GGWCC 2 cut(s) 14, 104
XapI RAATTY 2 cut(s) 76, 531
XmaJI CCTAGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 546
XspI CTAG 3 cut(s) 86, 602, 722
ZrmI AGTACT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.