Rh3BG104400

Transmembrane protein 87B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003014
Physical Location & Seq
Forward (+)
8355349 .. 8358576
3228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG104400.1

Sequence Viewer

Length: 1185 bp
ATGGAACGAGGCGGATGGTTTTGGGGAGAAAAGGGGTCAGCTTTAGGGTTGTTCATAGTTGGGCTCATTTTGATCATCAACGGCTGTAATGCTTCCATCCACGAGTACAGAAACGAAGCTTTTACTCCTCAGTCAAACGCCTTCTTCTTCCATGGAGGCAGCGAAGGTCTCTACGCTTCTAAGGTCGTCGATTCCTCTTCTTCTTCTTCAGATACTCACGTCAAGGGCAAGTCCTTCATCAGGTTTGAGAGTGTTACTTTTGTGAGGACAAAGGAGTCTGCGAATACGCAGAATGAAATGCAGCAGAGTACTGGTTTGGTGGAAGCTATAATTCTTGAGGTGAAGGACAGGGCTAGGATTGGGGCTTCCTTCCTGAAATCGGATCTGATATGCTGCACCAGGAATCTTTCCGAGGATGGACAATGCACGGCGGGGGAGGTTGTTATCCACAAAAATCCAGACAATCCCGAGTGGCCTAGGCGCATCCAAACAGTCTTTAATGGAAAGAACGAAGAGGCTAAGATGCAGTCTGAGACGGTTGAGATAAAAAGTTCTGGAATGTACTACCTGTATTTTATGTTTTGTAATCCGGAACTCAAGGGCACGCTGATTAAAGGAAGGACTGATTGGAGAAATCCATATGGTTATTTGCCGGGGAAGATGGCTCCTCTGATGACATTCTATGGCTTAATGTCTTTAGCTTACCTTGTGCTTGGCCTTGCCTGGTTTCTGAGGTTTGTTCAGTTTTGGAAGGATATCATACAATTGCACTACCACATCACAGCCGTGATTGCTCTTGGAATGTGTGAAATGGCTGTCTGGTACTTTGAGTACGTCAATTTCAATTCGACTGGAACCAGACCTATGGGCATTACACTCTGGGCGGTAACCTTTAGATCTGTCAAGAAGACACTCTCTCGTCTTCTTCTGTTAGTAGTTTCAATGGGCTTTGGTGTGGTGAAGCCTACACTTGGTGGTATAACCCCAAAAGTATTTCTGCTTGGCGTGGTATATTTTATGGCATCAGAAGCACTCGAGCTTATTGAAAATTTGGGGAATATCAATGATTTTTCTGGAAAAGCAAAGTTATTTTTGGTCTTACCAGTTGCCTTCTTAGATTCGTGCTTTATTCTGTGGATTTTCTCTTCGTTATCAAAAACTTTGGAGAAACTTCAGGTACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

394

Amino Acids

44.27

Weight (kDa)

8.55

Isoelectric Point (pI)

37.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 223 - 394 1.2e-60 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 274
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 3 cut(s) 12, 431, 884
AclWI GGATC 1 cut(s) 390
AcsI RAATTY 1 cut(s) 1048
AcuI CTGAAG 2 cut(s) 192, 1157
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 6 cut(s) 107, 310, 563, 824, 833, 1179
AfiI CCNNNNNNNGG 3 cut(s) 240, 379, 971
AgsI TTSAA 3 cut(s) 844, 942, 1046
AjiI CACGTC 1 cut(s) 220
AjnI CCWGG 2 cut(s) 398, 722
AjuI GAANNNNNNNTTGG 2 cut(s) 610, 642
AleI CACNNNNGTG 1 cut(s) 785
AluBI AGCT 5 cut(s) 41, 119, 326, 701, 1039
AluI AGCT 5 cut(s) 41, 119, 326, 701, 1039
Alw26I GTCTC 2 cut(s) 173, 527
AlwI GGATC 1 cut(s) 390
Ama87I CYCGRG 2 cut(s) 467, 1034
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 2 cut(s) 473, 715
ApeKI GCWGC 3 cut(s) 159, 301, 393
ApoI RAATTY 1 cut(s) 1048
AspA2I CCTAGG 1 cut(s) 476
AspLEI GCGC 1 cut(s) 483
AsuC2I CCSGG 1 cut(s) 654
AsuHPI GGTGA 2 cut(s) 352, 970
AvaI CYCGRG 2 cut(s) 467, 1034
AvrII CCTAGG 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 605
BaeI ACNNNNGTAYC 2 cut(s) 204, 237
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 1 cut(s) 101
BbsI GAAGAC 2 cut(s) 914, 914
BbvI GCAGC 3 cut(s) 171, 313, 380
BccI CCATC 4 cut(s) 9, 104, 410, 655
BceAI ACGGC 3 cut(s) 97, 444, 770
BciT130I CCWGG 2 cut(s) 400, 724
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 1 cut(s) 654
BcoDI GTCTC 2 cut(s) 173, 527
BfaI CTAG 2 cut(s) 354, 477
BglII AGATCT 1 cut(s) 896
BisI GCNGC 3 cut(s) 160, 302, 394
BlnI CCTAGG 1 cut(s) 476
BlsI GCNGC 3 cut(s) 161, 303, 395
BmcAI AGTACT 1 cut(s) 310
Bme1390I CCNGG 3 cut(s) 400, 654, 724
BmeT110I CYCGRG 2 cut(s) 467, 1034
BmgBI CACGTC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 666, 856
BmrFI CCNGG 3 cut(s) 400, 654, 724
BmsI GCATC 3 cut(s) 492, 513, 1031
BpiI GAAGAC 2 cut(s) 914, 914
BpuEI CTTGAG 2 cut(s) 356, 581
BpuMI CCSGG 1 cut(s) 654
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 151, 411, 476, 653
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 379, 971
Bse1I ACTGG 3 cut(s) 316, 856, 1103
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 2 cut(s) 400, 724
BseDI CCNNGG 4 cut(s) 151, 411, 476, 653
BseGI GGATG 4 cut(s) 20, 96, 421, 483
BseLI CCNNNNNNNGG 3 cut(s) 240, 379, 971
BseMII CTCAG 3 cut(s) 143, 522, 722
BseNI ACTGG 3 cut(s) 316, 856, 1103
BseRI GAGGAG 2 cut(s) 117, 657
BseSI GKGCMC 1 cut(s) 605
BseXI GCAGC 3 cut(s) 171, 313, 380
BsgI GTGCAG 1 cut(s) 379
BshFI GGCC 2 cut(s) 475, 717
BsiHKCI CYCGRG 2 cut(s) 467, 1034
BsiSI CCGG 2 cut(s) 590, 653
BslI CCNNNNNNNGG 3 cut(s) 240, 379, 971
BsmAI GTCTC 2 cut(s) 173, 527
BsmBI CGTCTC 1 cut(s) 527
BsnI GGCC 2 cut(s) 475, 717
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 2 cut(s) 467, 1034
Bsp1286I GDGCHC 2 cut(s) 66, 605
Bsp13I TCCGGA 1 cut(s) 589
Bsp143I GATC 3 cut(s) 72, 382, 896
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 3 cut(s) 12, 431, 884
BspANI GGCC 2 cut(s) 475, 717
BspCNI CTCAG 3 cut(s) 142, 523, 723
BspEI TCCGGA 1 cut(s) 589
BspLI GGNNCC 2 cut(s) 666, 856
BspPI GGATC 1 cut(s) 390
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 3 cut(s) 316, 856, 1103
BssECI CCNNGG 4 cut(s) 151, 411, 476, 653
BssMI GATC 3 cut(s) 72, 382, 896
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 2 cut(s) 151, 476
Bst2BI CACGAG 1 cut(s) 101
Bst2UI CCWGG 2 cut(s) 400, 724
Bst4CI ACNGT 2 cut(s) 493, 538
Bst6I CTCTTC 3 cut(s) 202, 507, 1150
BstC8I GCNNGC 1 cut(s) 605
BstDEI CTNAG 6 cut(s) 129, 180, 519, 531, 731, 1114
BstDSI CCRYGG 1 cut(s) 151
BstEII GGTNACC 1 cut(s) 886
BstENI CCTNNNNNAGG 1 cut(s) 238
BstF5I GGATG 4 cut(s) 20, 96, 421, 483
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 3 cut(s) 75, 385, 899
BstMAI GTCTC 2 cut(s) 173, 527
BstMBI GATC 3 cut(s) 72, 382, 896
BstMWI GCNNNNNNNGC 2 cut(s) 791, 1028
BstNI CCWGG 2 cut(s) 400, 724
BstPI GGTNACC 1 cut(s) 886
BstSCI CCNGG 3 cut(s) 398, 652, 722
BstSLI GKGCMC 1 cut(s) 605
BstV1I GCAGC 3 cut(s) 171, 313, 380
BstV2I GAAGAC 2 cut(s) 914, 914
BstX2I RGATCY 2 cut(s) 382, 896
BstXI CCANNNNNNTGG 1 cut(s) 865
BstYI RGATCY 2 cut(s) 382, 896
BsuRI GGCC 2 cut(s) 475, 717
BtgI CCRYGG 1 cut(s) 151
BtrI CACGTC 1 cut(s) 220
BtsCI GGATG 4 cut(s) 20, 96, 421, 483
Cac8I GCNNGC 1 cut(s) 605
CfoI GCGC 1 cut(s) 483
Csp6I GTAC 6 cut(s) 106, 309, 562, 823, 832, 1178
CviAII CATG 1 cut(s) 152
CviQI GTAC 6 cut(s) 106, 309, 562, 823, 832, 1178
DdeI CTNAG 6 cut(s) 129, 180, 519, 531, 731, 1114
DpnI GATC 3 cut(s) 74, 384, 898
DpnII GATC 3 cut(s) 72, 382, 896
DraIII CACNNNGTG 1 cut(s) 974
DrdI GACNNNNNNGTC 1 cut(s) 274
DseDI GACNNNNNNGTC 1 cut(s) 274
Eam1104I CTCTTC 3 cut(s) 202, 507, 1150
EarI CTCTTC 3 cut(s) 202, 507, 1150
EciI GGCGGA 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 151, 476
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 192, 1157
Eco88I CYCGRG 2 cut(s) 467, 1034
Eco91I GGTNACC 1 cut(s) 886
EcoNI CCTNNNNNAGG 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 886
EcoRII CCWGG 2 cut(s) 398, 722
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 151, 476
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 2 cut(s) 151, 476
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 1 cut(s) 155
FatI CATG 1 cut(s) 151
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 1 cut(s) 640
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 160, 302, 394
FokI GGATG 4 cut(s) 27, 83, 428, 470
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 160, 302, 394
FspBI CTAG 2 cut(s) 354, 477
GlaI GCGC 1 cut(s) 482
GluI GCNGC 3 cut(s) 160, 302, 394
HaeIII GGCC 2 cut(s) 475, 717
HapII CCGG 2 cut(s) 590, 653
HhaI GCGC 1 cut(s) 483
Hin1II CATG 1 cut(s) 155
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 4 cut(s) 191, 275, 403, 1118
HpaII CCGG 2 cut(s) 590, 653
HphI GGTGA 2 cut(s) 352, 970
Hpy188I TCNGA 8 cut(s) 211, 382, 387, 412, 532, 672, 732, 1027
Hpy188III TCNNGA 8 cut(s) 335, 373, 458, 467, 555, 590, 904, 1074
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 8 cut(s) 151, 158, 244, 337, 379, 612, 745, 1120
HpyCH4III ACNGT 2 cut(s) 493, 538
HpyCH4IV ACGT 2 cut(s) 219, 834
HpyCH4V TGCA 5 cut(s) 301, 396, 426, 526, 769
HpyF10VI GCNNNNNNNGC 2 cut(s) 791, 1028
HpyF3I CTNAG 6 cut(s) 129, 180, 519, 531, 731, 1114
HpySE526I ACGT 2 cut(s) 219, 834
Hsp92II CATG 1 cut(s) 155
HspAI GCGC 1 cut(s) 481
Kpn2I TCCGGA 1 cut(s) 589
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 3 cut(s) 72, 382, 896
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 3 cut(s) 171, 313, 380
LweI GCATC 3 cut(s) 492, 513, 1031
MaeI CTAG 2 cut(s) 354, 477
MaeII ACGT 2 cut(s) 219, 834
MaeIII GTNAC 2 cut(s) 253, 886
MalI GATC 3 cut(s) 74, 384, 898
MboI GATC 3 cut(s) 72, 382, 896
MfeI CAATTG 1 cut(s) 764
MflI RGATCY 2 cut(s) 382, 896
MhlI GDGCHC 2 cut(s) 66, 605
MluCI AATT 5 cut(s) 330, 764, 838, 844, 1048
MlyI GAGTC 1 cut(s) 284
MroI TCCGGA 1 cut(s) 589
MseI TTAA 3 cut(s) 498, 612, 689
MslI CAYNNNNRTG 1 cut(s) 785
MspI CCGG 2 cut(s) 590, 653
MspR9I CCNGG 3 cut(s) 400, 654, 724
MunI CAATTG 1 cut(s) 764
MvaI CCWGG 2 cut(s) 400, 724
MwoI GCNNNNNNNGC 2 cut(s) 791, 1028
NciI CCSGG 1 cut(s) 654
NcoI CCATGG 1 cut(s) 151
NdeI CATATG 1 cut(s) 640
NdeII GATC 3 cut(s) 72, 382, 896
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 2 cut(s) 666, 856
OliI CACNNNNGTG 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 1034
PfeI GAWTC 3 cut(s) 191, 403, 1118
PkrI GCNGC 3 cut(s) 161, 303, 395
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 398, 722
PspEI GGTNACC 1 cut(s) 886
PspGI CCWGG 2 cut(s) 398, 722
PspN4I GGNNCC 2 cut(s) 666, 856
PspXI VCTCGAGB 1 cut(s) 1034
PsuI RGATCY 2 cut(s) 382, 896
RsaI GTAC 6 cut(s) 107, 310, 563, 824, 833, 1179
RsaNI GTAC 6 cut(s) 106, 309, 562, 823, 832, 1178
RseI CAYNNNNRTG 1 cut(s) 785
SaqAI TTAA 3 cut(s) 498, 612, 689
SatI GCNGC 3 cut(s) 160, 302, 394
Sau3AI GATC 3 cut(s) 72, 382, 896
ScaI AGTACT 1 cut(s) 310
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 3 cut(s) 400, 654, 724
SduI GDGCHC 2 cut(s) 66, 605
SfaNI GCATC 3 cut(s) 492, 513, 1031
Sfr274I CTCGAG 1 cut(s) 1034
SlaI CTCGAG 1 cut(s) 1034
SmiMI CAYNNNNRTG 1 cut(s) 785
SmlI CTYRAG 3 cut(s) 335, 596, 1034
SmoI CTYRAG 3 cut(s) 335, 596, 1034
Sse9I AATT 5 cut(s) 330, 764, 838, 844, 1048
SsiI CCGC 3 cut(s) 12, 431, 884
SspMI CTAG 2 cut(s) 354, 477
StyD4I CCNGG 3 cut(s) 398, 652, 722
StyI CCWWGG 2 cut(s) 151, 476
TaaI ACNGT 2 cut(s) 493, 538
TaiI ACGT 2 cut(s) 222, 837
TaqI TCGA 3 cut(s) 189, 848, 1035
TasI AATT 5 cut(s) 330, 764, 838, 844, 1048
TatI WGTACW 3 cut(s) 105, 308, 561
TfiI GAWTC 3 cut(s) 191, 403, 1118
Tru1I TTAA 3 cut(s) 498, 612, 689
Tru9I TTAA 3 cut(s) 498, 612, 689
TseI GCWGC 3 cut(s) 159, 301, 393
TspDTI ATGAA 3 cut(s) 43, 226, 309
XagI CCTNNNNNAGG 1 cut(s) 238
XapI RAATTY 1 cut(s) 1048
XhoI CTCGAG 1 cut(s) 1034
XmaJI CCTAGG 1 cut(s) 476
XspI CTAG 2 cut(s) 354, 477
ZrmI AGTACT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.