pycom01g18130

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0003014
Physical Location & Seq
Reverse (-)
17243988 .. 17246020
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18130.2

Sequence Viewer

Length: 1122 bp
ATGGTTCCTGCAAGGTGGGAGAGGTTATCATCCAACAAAACCCAGACAACCCTGATGGGCCCAAAAGGATTCAGACCTTCTTCGAGGGTAAAAATGAAGAGGCTAATATGGATATCCAAACTATTGAGATCAACAGCACCGGAATGTACTATCTTTATTTTATGTTCTGTCGATCCAGAACTTGTTGGCACATTAATCAGCGGAAGAACTGTTTGGAGGAACCCTGACGGTTATTTACCCGGAAAGATGTCCCCATTGATGACATTTTTTGGCCTAATGTCTTTAGCATATCTTGTCCTCGGTCTTTTCTGGTTTCTCCGCTTTTTACAGTATTGGAAAGACATAATACAGTTGCACTACCACATCAGTGCTGTAATTGGACTTGGAATGTGTGAAATGGCCCTTTGGTATTTTGAATATGCAAATTTTAATTCCACTGGGAGCAGACCAATGGGAATTACCATATGGGCGGTAACCTTCAGCGCCGTTAAGAAAACTGTCTCTCGGCTTCTTCTTCTGGTGGTTTCAATGGGCTATGGTGTTGTGCGGCCAACTCTTGGTGGTATAACCTCGAAAGTACTTCTCCTTGGGGTAATATATTTTGTAGCGTCAGAAGCACTTGAGCTTGTTGAACATTTGGGGAATATCAATGACTTTTCTGGAAAAGCCAGGCTTTTTCTGGTGCTACCGGTTGCTCTTTTGGATGCCTGTTTTATTCTTTGGATCTTTTCCTCGTTATCTAAGACTTTGGAGAAGCTTCAGTTGTATTTCAACGCGACTGATCCGTTGAGTGAACTGTGGCGAAGAGCCTCGATCATCCCAGCTTTCTGGACCTTACTTGCTTATTTGCTGTTGGTGGTGATATGTGTTCTTTGGGCTCCATCCAATAACCCAACCGGATATGCATACTCGGAGGAGACTGCTGATGACTTCGACGACGAGGCTATCTCACTCACGGGAAGTGGAGTTAAGGTGGCGGGCGGAGACTTGGCAACCAAGTTAGAGAGAAAGGAAAGGAAGGCCTCGAGCGCAGCAGATCGATCACGTGTTTGGGCTTGGGGAAGATCTAGAGGAGGACAAGAGAGAATAACGACCGGCTTTTCTTCCGATATTTCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

374

Amino Acids

41.69

Weight (kDa)

9.37

Isoelectric Point (pI)

45.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 557
AccII CGCG 1 cut(s) 776
AciI CCGC 6 cut(s) 201, 319, 470, 547, 977, 981
AclWI GGATC 3 cut(s) 167, 731, 776
AcoI YGGCCR 1 cut(s) 548
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 2 cut(s) 463, 743
AcvI CACGTG 1 cut(s) 1046
AfaI GTAC 2 cut(s) 148, 579
AfiI CCNNNNNNNGG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 1045
AgeI ACCGGT 1 cut(s) 688
AgsI TTSAA 4 cut(s) 416, 528, 632, 772
AjnI CCWGG 1 cut(s) 668
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 3 cut(s) 625, 757, 824
AluI AGCT 3 cut(s) 625, 757, 824
Alw26I GTCTC 3 cut(s) 505, 911, 978
AlwI GGATC 3 cut(s) 167, 731, 776
Ama87I CYCGRG 1 cut(s) 1024
AoxI GGCC 5 cut(s) 58, 271, 399, 548, 1020
ApaI GGGCCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 1031
ApoI RAATTY 1 cut(s) 424
AseI ATTAAT 1 cut(s) 194
AsiGI ACCGGT 1 cut(s) 688
AspLEI GCGC 2 cut(s) 485, 1031
AspS9I GGNCC 4 cut(s) 58, 59, 400, 831
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 871
AvaI CYCGRG 1 cut(s) 1024
AvaII GGWCC 1 cut(s) 831
BaeGI GKGCMC 1 cut(s) 62
BanII GRGCYC 2 cut(s) 62, 880
BbrPI CACGTG 1 cut(s) 1046
BbvI GCAGC 1 cut(s) 1043
BccI CCATC 2 cut(s) 49, 889
BceAI ACGGC 1 cut(s) 470
BciT130I CCWGG 1 cut(s) 670
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 3 cut(s) 505, 911, 978
BfaI CTAG 1 cut(s) 1068
BfoI RGCGCY 1 cut(s) 486
BglII AGATCT 1 cut(s) 1064
BisI GCNGC 2 cut(s) 548, 1032
BlsI GCNGC 2 cut(s) 549, 1033
BmcAI AGTACT 1 cut(s) 579
Bme1390I CCNGG 2 cut(s) 240, 670
Bme18I GGWCC 1 cut(s) 831
BmeT110I CYCGRG 1 cut(s) 1024
BmgT120I GGNCC 4 cut(s) 58, 59, 400, 831
BmiI GGNNCC 4 cut(s) 6, 60, 221, 879
BmrFI CCNGG 2 cut(s) 240, 670
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 1 cut(s) 694
BmuI ACTGGG 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 932, 964
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 1039
BsaAI YACGTR 1 cut(s) 1046
BsaJI CCNNGG 2 cut(s) 298, 586
BsaWI WCCGGW 3 cut(s) 139, 688, 896
BsaXI ACNNNNNCTCC 2 cut(s) 957, 987
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse118I RCCGGY 2 cut(s) 688, 1094
Bse1I ACTGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 670
BseCI ATCGAT 1 cut(s) 1039
BseDI CCNNGG 2 cut(s) 298, 586
BseGI GGATG 4 cut(s) 29, 709, 816, 881
BseLI CCNNNNNNNGG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 2 cut(s) 929, 1086
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 1 cut(s) 1043
BseYI CCCAGC 1 cut(s) 820
Bsh1236I CGCG 1 cut(s) 776
Bsh1285I CGRYCG 1 cut(s) 1095
BshFI GGCC 5 cut(s) 60, 273, 401, 550, 1022
BshTI ACCGGT 1 cut(s) 688
BshVI ATCGAT 1 cut(s) 1039
BsiEI CGRYCG 1 cut(s) 1095
BsiHKCI CYCGRG 1 cut(s) 1024
BsiSI CCGG 5 cut(s) 140, 240, 689, 897, 1095
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 3 cut(s) 505, 911, 978
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 5 cut(s) 60, 273, 401, 550, 1022
BsoBI CYCGRG 1 cut(s) 1024
Bsp120I GGGCCC 1 cut(s) 58
Bsp1286I GDGCHC 2 cut(s) 62, 880
Bsp143I GATC 8 cut(s) 128, 172, 723, 781, 813, 1036, 1040, 1064
BspACI CCGC 6 cut(s) 201, 319, 470, 547, 977, 981
BspANI GGCC 5 cut(s) 60, 273, 401, 550, 1022
BspDI ATCGAT 1 cut(s) 1039
BspFNI CGCG 1 cut(s) 776
BspLI GGNNCC 4 cut(s) 6, 60, 221, 879
BspPI GGATC 3 cut(s) 167, 731, 776
BspQI GCTCTTC 1 cut(s) 799
BsrFI RCCGGY 2 cut(s) 688, 1094
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 2 cut(s) 688, 1094
BssECI CCNNGG 2 cut(s) 298, 586
BssMI GATC 8 cut(s) 128, 172, 723, 781, 813, 1036, 1040, 1064
BssT1I CCWWGG 1 cut(s) 586
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 6 cut(s) 211, 230, 330, 351, 499, 798
Bst6I CTCTTC 2 cut(s) 92, 799
BstBAI YACGTR 1 cut(s) 1046
BstC8I GCNNGC 1 cut(s) 979
BstDEI CTNAG 1 cut(s) 741
BstEII GGTNACC 1 cut(s) 472
BstF5I GGATG 4 cut(s) 29, 709, 816, 881
BstFNI CGCG 1 cut(s) 776
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 2 cut(s) 485, 1031
BstKTI GATC 8 cut(s) 131, 175, 726, 784, 816, 1039, 1043, 1067
BstMAI GTCTC 3 cut(s) 505, 911, 978
BstMBI GATC 8 cut(s) 128, 172, 723, 781, 813, 1036, 1040, 1064
BstMCI CGRYCG 1 cut(s) 1095
BstMWI GCNNNNNNNGC 2 cut(s) 614, 1028
BstNI CCWGG 1 cut(s) 670
BstPI GGTNACC 1 cut(s) 472
BstSCI CCNGG 2 cut(s) 238, 668
BstSLI GKGCMC 1 cut(s) 62
BstUI CGCG 1 cut(s) 776
BstV1I GCAGC 1 cut(s) 1043
BstX2I RGATCY 2 cut(s) 723, 1064
BstXI CCANNNNNNTGG 1 cut(s) 828
BstYI RGATCY 2 cut(s) 723, 1064
Bsu15I ATCGAT 1 cut(s) 1039
BsuRI GGCC 5 cut(s) 60, 273, 401, 550, 1022
BsuTUI ATCGAT 1 cut(s) 1039
BtsCI GGATG 4 cut(s) 29, 709, 816, 881
BtsIMutI CAGTG 2 cut(s) 373, 435
Cac8I GCNNGC 1 cut(s) 979
CfoI GCGC 2 cut(s) 485, 1031
Cfr10I RCCGGY 2 cut(s) 688, 1094
Cfr13I GGNCC 4 cut(s) 58, 59, 400, 831
ClaI ATCGAT 1 cut(s) 1039
CseI GACGC 1 cut(s) 597
Csp6I GTAC 2 cut(s) 147, 578
CspAI ACCGGT 1 cut(s) 688
CviQI GTAC 2 cut(s) 147, 578
DdeI CTNAG 1 cut(s) 741
DpnI GATC 8 cut(s) 130, 174, 725, 783, 815, 1038, 1042, 1066
DpnII GATC 8 cut(s) 128, 172, 723, 781, 813, 1036, 1040, 1064
EaeI YGGCCR 1 cut(s) 548
Eam1104I CTCTTC 2 cut(s) 92, 799
EarI CTCTTC 2 cut(s) 92, 799
EciI GGCGGA 1 cut(s) 996
Eco130I CCWWGG 1 cut(s) 586
Eco147I AGGCCT 1 cut(s) 1022
Eco24I GRGCYC 2 cut(s) 62, 880
Eco32I GATATC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 831
Eco57I CTGAAG 2 cut(s) 463, 743
Eco72I CACGTG 1 cut(s) 1046
Eco88I CYCGRG 1 cut(s) 1024
Eco91I GGTNACC 1 cut(s) 472
EcoO65I GGTNACC 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 668
EcoRV GATATC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 586
EcoT22I ATGCAT 1 cut(s) 907
EcoT38I GRGCYC 2 cut(s) 62, 880
ErhI CCWWGG 1 cut(s) 586
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FaqI GGGAC 1 cut(s) 235
FauI CCCGC 1 cut(s) 970
FauNDI CATATG 1 cut(s) 464
Fnu4HI GCNGC 2 cut(s) 548, 1032
FokI GGATG 4 cut(s) 16, 716, 803, 868
FriOI GRGCYC 2 cut(s) 62, 880
Fsp4HI GCNGC 2 cut(s) 548, 1032
FspBI CTAG 1 cut(s) 1068
GlaI GCGC 2 cut(s) 484, 1030
GluI GCNGC 2 cut(s) 548, 1032
GsaI CCCAGC 1 cut(s) 824
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 5 cut(s) 60, 273, 401, 550, 1022
HapII CCGG 5 cut(s) 140, 240, 689, 897, 1095
HgaI GACGC 1 cut(s) 597
HhaI GCGC 2 cut(s) 485, 1031
Hin6I GCGC 2 cut(s) 483, 1029
HinP1I GCGC 2 cut(s) 483, 1029
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 1 cut(s) 69
HpaII CCGG 5 cut(s) 140, 240, 689, 897, 1095
HphI GGTGA 1 cut(s) 871
Hpy166II GTNNAC 1 cut(s) 794
Hpy188I TCNGA 4 cut(s) 74, 613, 913, 1108
Hpy188III TCNNGA 4 cut(s) 176, 660, 829, 1068
Hpy8I GTNNAC 1 cut(s) 794
Hpy99I CGWCG 2 cut(s) 938, 941
HpyAV CCTTC 3 cut(s) 87, 487, 1012
HpyCH4III ACNGT 6 cut(s) 211, 230, 330, 351, 499, 798
HpyCH4IV ACGT 1 cut(s) 1045
HpyCH4V TGCA 4 cut(s) 11, 355, 422, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 614, 1028
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 1 cut(s) 1045
HspAI GCGC 2 cut(s) 483, 1029
Kzo9I GATC 8 cut(s) 128, 172, 723, 781, 813, 1036, 1040, 1064
LguI GCTCTTC 1 cut(s) 799
LmnI GCTCC 2 cut(s) 441, 883
Lsp1109I GCAGC 1 cut(s) 1043
LweI GCATC 1 cut(s) 694
MaeI CTAG 1 cut(s) 1068
MaeII ACGT 1 cut(s) 1045
MaeIII GTNAC 1 cut(s) 472
MalI GATC 8 cut(s) 130, 174, 725, 783, 815, 1038, 1042, 1066
MboI GATC 8 cut(s) 128, 172, 723, 781, 813, 1036, 1040, 1064
MboII GAAGA 8 cut(s) 72, 109, 216, 503, 506, 816, 1074, 1095
MflI RGATCY 2 cut(s) 723, 1064
MhlI GDGCHC 2 cut(s) 62, 880
MluCI AATT 4 cut(s) 375, 424, 430, 456
MmeI TCCRAC 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 907
MseI TTAA 4 cut(s) 194, 429, 489, 969
MslI CAYNNNNRTG 2 cut(s) 142, 366
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 5 cut(s) 140, 240, 689, 897, 1095
MspR9I CCNGG 2 cut(s) 240, 670
MvaI CCWGG 1 cut(s) 670
MvnI CGCG 1 cut(s) 776
MwoI GCNNNNNNNGC 2 cut(s) 614, 1028
NciI CCSGG 1 cut(s) 240
NdeI CATATG 1 cut(s) 464
NdeII GATC 8 cut(s) 128, 172, 723, 781, 813, 1036, 1040, 1064
NlaIV GGNNCC 4 cut(s) 6, 60, 221, 879
NmeAIII GCCGAG 1 cut(s) 484
NsiI ATGCAT 1 cut(s) 907
OliI CACNNNNGTG 1 cut(s) 366
PaeR7I CTCGAG 1 cut(s) 1024
PceI AGGCCT 1 cut(s) 1022
PciSI GCTCTTC 1 cut(s) 799
PfeI GAWTC 1 cut(s) 69
PflMI CCANNNNNTGG 1 cut(s) 557
PinAI ACCGGT 1 cut(s) 688
PkrI GCNGC 2 cut(s) 549, 1033
PmaCI CACGTG 1 cut(s) 1046
PmlI CACGTG 1 cut(s) 1046
Ppu21I YACGTR 1 cut(s) 1046
PshBI ATTAAT 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 668
PspCI CACGTG 1 cut(s) 1046
PspEI GGTNACC 1 cut(s) 472
PspFI CCCAGC 1 cut(s) 820
PspGI CCWGG 1 cut(s) 668
PspN4I GGNNCC 4 cut(s) 6, 60, 221, 879
PspOMI GGGCCC 1 cut(s) 58
PspPI GGNCC 4 cut(s) 58, 59, 400, 831
PspXI VCTCGAGB 1 cut(s) 1024
PsuI RGATCY 2 cut(s) 723, 1064
RsaI GTAC 2 cut(s) 148, 579
RsaNI GTAC 2 cut(s) 147, 578
RseI CAYNNNNRTG 2 cut(s) 142, 366
SapI GCTCTTC 1 cut(s) 799
SaqAI TTAA 4 cut(s) 194, 429, 489, 969
SatI GCNGC 2 cut(s) 548, 1032
Sau3AI GATC 8 cut(s) 128, 172, 723, 781, 813, 1036, 1040, 1064
Sau96I GGNCC 4 cut(s) 58, 59, 400, 831
ScaI AGTACT 1 cut(s) 579
ScrFI CCNGG 2 cut(s) 240, 670
SduI GDGCHC 2 cut(s) 62, 880
SfaNI GCATC 1 cut(s) 694
Sfr274I CTCGAG 1 cut(s) 1024
SinI GGWCC 1 cut(s) 831
SlaI CTCGAG 1 cut(s) 1024
SmiMI CAYNNNNRTG 2 cut(s) 142, 366
SmlI CTYRAG 2 cut(s) 620, 1024
SmoI CTYRAG 2 cut(s) 620, 1024
Sse9I AATT 4 cut(s) 375, 424, 430, 456
SseBI AGGCCT 1 cut(s) 1022
SsiI CCGC 6 cut(s) 201, 319, 470, 547, 977, 981
SspMI CTAG 1 cut(s) 1068
StuI AGGCCT 1 cut(s) 1022
StyD4I CCNGG 2 cut(s) 238, 668
StyI CCWWGG 1 cut(s) 586
TaaI ACNGT 6 cut(s) 211, 230, 330, 351, 499, 798
TaiI ACGT 1 cut(s) 1048
TaqI TCGA 7 cut(s) 83, 171, 572, 812, 933, 1025, 1039
TaqII GACCGA 1 cut(s) 290
TasI AATT 4 cut(s) 375, 424, 430, 456
TatI WGTACW 2 cut(s) 146, 577
TauI GCSGC 1 cut(s) 550
TfiI GAWTC 1 cut(s) 69
Tru1I TTAA 4 cut(s) 194, 429, 489, 969
Tru9I TTAA 4 cut(s) 194, 429, 489, 969
TscAI CASTG 2 cut(s) 373, 442
TseI GCWGC 1 cut(s) 1031
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 774
TspRI CASTG 2 cut(s) 373, 442
Van91I CCANNNNNTGG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 831
VspI ATTAAT 1 cut(s) 194
XapI RAATTY 1 cut(s) 424
XbaI TCTAGA 1 cut(s) 1067
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XhoI CTCGAG 1 cut(s) 1024
XspI CTAG 1 cut(s) 1068
ZrmI AGTACT 1 cut(s) 579
Zsp2I ATGCAT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.