FvH4_6g09800

Transmembrane protein 87B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003014
Physical Location & Seq
Forward (+)
5839405 .. 5842758
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09800.t1

Sequence Viewer

Length: 1263 bp
ATGCAGCAGAGTACTGGGATGGTGGAAGCTATCATTCTGGAGGTGAAGGACAGGACGAGGGTCGGGGCTTTGTTTTTGAAGTTGGATGTGATATGCTGCACCAGGAATCTTTCGAAGGATGGACAATGCACGGCTGGGGAGGTTGTTATACAGAAGAATCCGGACAATCCTGACTGGCCCAGGCGCATCAAGACCTCGTTTAATGGGAAGGACGAGGAGGCTAAGATGGAGTCTGAGACGGTTGAGATCAAGAGTTCGGGGATGTATTACCTGTACTTTATGTTCTGTAATCCGGAACTGAAAGGAACGCTGATTAAAGGGAGGACGGATTGGAGAAATCCAGATGGTTATTTGCCGGGGAAGATGGCTCCTTTGATGACATTCTATGGCTTAATGTCTTTGGCTTACCTTGTGCTTGGCCTTGCCTGGTTTCTGAGGTTTGTTCAGTATTGGAAGGATATTATACAATTGCACTACCATATCACAGCGGTGATTGCTCTTGGAATGTGTGAAATGGCTGTTTGGTACTTTGAGTATGTCAATTTCAATTTGACTGGAACAAGACCCATGGGAATTACACTGTGGGCAGTAACCTTTAGCTCTGTCAAGAAGACGCTCTCTCGTCTTCTTCTGTTAGTTGTTTCAATGGGCTTTGGTGTGGTGAAACCTACACTTGGTGGTATAACCCCAAAAGTGTTTCTGCTTGGCGGGGTCTATTTTATGGCATCAGAAGCGCTTGAGCTTGTTGAAAATCTGGGGAATATCAATGATTTTTCTGGAAAGGCAAAGTTATTTTTAGTCTTACCAGTTGCCTTCTTGGATTCATGCTTTATTCTGTGGATTTTCTCTTCGTTATCAAAAACTTTGGAGAAACTTCAGATGAGGAGAAACATGGCGAAGTTGGAGCTATATCGAAAATTTACCAACTCTCTTGCAGTGTCTGTGCTTCTGTCAGTTGCTTGGATTGGCTTTGAGCTATATTTCAATGCAACCGATCCATTGAGTGAGCTTTGGCAAATCGCCTGGGTTATTCCTGCATTTTGGACACTGCTTGCCTATGCTCTCTTGGCAGTGATATGTGTTCTCTGGGCTCCATCAAGTAACCCAACTAGATATGCATACTCAGAGGAGACGGGAGACGACTTTGATGAAGAGGGCGTCTCGTTAACAAGTGGTACTCTGAAGGTGAGCGGAGATACAGCAGCTATGAGAGAATTTAACAATGGGCTTGCAGAAGATCTGGAGGAGGATAAGCGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

421

Amino Acids

47.41

Weight (kDa)

5.43

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 124 - 369 2e-93 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1191
AccIII TCCGGA 2 cut(s) 160, 292
AciI CCGC 3 cut(s) 488, 708, 1191
AclWI GGATC 1 cut(s) 989
AcsI RAATTY 2 cut(s) 917, 1214
AcuI CTGAAG 2 cut(s) 860, 1202
AcyI GRCGYC 1 cut(s) 1158
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 4 cut(s) 13, 275, 527, 1177
AfeI AGCGCT 1 cut(s) 735
AfiI CCNNNNNNNGG 1 cut(s) 674
AgsI TTSAA 5 cut(s) 79, 547, 645, 749, 985
AjnI CCWGG 4 cut(s) 101, 179, 425, 1022
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 7 cut(s) 29, 600, 742, 907, 976, 1009, 1205
AluI AGCT 7 cut(s) 29, 600, 742, 907, 976, 1009, 1205
Alw26I GTCTC 4 cut(s) 230, 1124, 1131, 1165
AlwI GGATC 1 cut(s) 989
AlwNI CAGNNNCTG 1 cut(s) 941
Aor13HI TCCGGA 2 cut(s) 160, 292
Aor51HI AGCGCT 1 cut(s) 735
AoxI GGCC 2 cut(s) 176, 418
ApeKI GCWGC 3 cut(s) 4, 96, 1202
ApoI RAATTY 2 cut(s) 917, 1214
AspLEI GCGC 2 cut(s) 186, 736
AspS9I GGNCC 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 4 cut(s) 55, 502, 673, 1198
AsuII TTCGAA 1 cut(s) 113
BanII GRGCYC 1 cut(s) 1093
BbsI GAAGAC 2 cut(s) 617, 617
BbvI GCAGC 3 cut(s) 16, 83, 1214
BccI CCATC 6 cut(s) 13, 113, 220, 338, 358, 1102
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 4 cut(s) 103, 181, 427, 1024
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 4 cut(s) 230, 1124, 1131, 1165
BfaI CTAG 1 cut(s) 1110
BfoI RGCGCY 1 cut(s) 737
BglII AGATCT 1 cut(s) 1237
BisI GCNGC 3 cut(s) 5, 97, 1203
BlsI GCNGC 3 cut(s) 6, 98, 1204
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 5 cut(s) 103, 181, 357, 427, 1024
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 369, 1092
BmrFI CCNGG 5 cut(s) 103, 181, 357, 427, 1024
BmrI ACTGGG 1 cut(s) 24
BmsI GCATC 2 cut(s) 195, 734
BmuI ACTGGG 1 cut(s) 24
BoxI GACNNNNGTC 1 cut(s) 59
BpiI GAAGAC 2 cut(s) 617, 617
BplI GAGNNNNNCTC 2 cut(s) 1145, 1177
BpmI CTGGAG 2 cut(s) 59, 1262
Bpu14I TTCGAA 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 758
BpuMI CCSGG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 1158
BsaJI CCNNGG 4 cut(s) 179, 356, 567, 1023
BsaWI WCCGGW 2 cut(s) 160, 292
Bsc4I CCNNNNNNNGG 1 cut(s) 674
Bse1I ACTGG 4 cut(s) 19, 179, 559, 806
BseAI TCCGGA 2 cut(s) 160, 292
BseBI CCWGG 4 cut(s) 103, 181, 427, 1024
BseDI CCNNGG 4 cut(s) 179, 356, 567, 1023
BseGI GGATG 4 cut(s) 24, 91, 124, 267
BseLI CCNNNNNNNGG 1 cut(s) 674
BseMII CTCAG 3 cut(s) 225, 425, 1137
BseNI ACTGG 4 cut(s) 19, 179, 559, 806
BseRI GAGGAG 4 cut(s) 230, 898, 1142, 1259
BseXI GCAGC 3 cut(s) 16, 83, 1214
BseYI CCCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 82
BshFI GGCC 2 cut(s) 178, 420
BsiSI CCGG 3 cut(s) 161, 293, 356
BslI CCNNNNNNNGG 1 cut(s) 674
BsmAI GTCTC 4 cut(s) 230, 1124, 1131, 1165
BsmBI CGTCTC 4 cut(s) 230, 1124, 1131, 1165
BsnI GGCC 2 cut(s) 178, 420
Bsp119I TTCGAA 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 1093
Bsp13I TCCGGA 2 cut(s) 160, 292
Bsp143I GATC 3 cut(s) 246, 994, 1237
Bsp19I CCATGG 1 cut(s) 567
BspACI CCGC 3 cut(s) 488, 708, 1191
BspANI GGCC 2 cut(s) 178, 420
BspCNI CTCAG 3 cut(s) 226, 426, 1136
BspEI TCCGGA 2 cut(s) 160, 292
BspLI GGNNCC 2 cut(s) 369, 1092
BspPI GGATC 1 cut(s) 989
BspT104I TTCGAA 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 1191
BsrI ACTGG 4 cut(s) 19, 179, 559, 806
BssECI CCNNGG 4 cut(s) 179, 356, 567, 1023
BssMI GATC 3 cut(s) 246, 994, 1237
BssNI GRCGYC 1 cut(s) 1158
BssT1I CCWWGG 1 cut(s) 567
Bst2UI CCWGG 4 cut(s) 103, 181, 427, 1024
Bst4CI ACNGT 2 cut(s) 241, 582
Bst6I CTCTTC 2 cut(s) 853, 1146
BstACI GRCGYC 1 cut(s) 1158
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 1053, 1230
BstDEI CTNAG 4 cut(s) 222, 234, 434, 1123
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 4 cut(s) 24, 91, 124, 267
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 2 cut(s) 186, 736
BstKTI GATC 3 cut(s) 249, 997, 1240
BstMAI GTCTC 4 cut(s) 230, 1124, 1131, 1165
BstMBI GATC 3 cut(s) 246, 994, 1237
BstMWI GCNNNNNNNGC 3 cut(s) 494, 731, 1067
BstNI CCWGG 4 cut(s) 103, 181, 427, 1024
BstPAI GACNNNNGTC 1 cut(s) 59
BstSCI CCNGG 5 cut(s) 101, 179, 355, 425, 1022
BstV1I GCAGC 3 cut(s) 16, 83, 1214
BstV2I GAAGAC 2 cut(s) 617, 617
BstX2I RGATCY 1 cut(s) 1237
BstYI RGATCY 1 cut(s) 1237
BsuRI GGCC 2 cut(s) 178, 420
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 4 cut(s) 24, 91, 124, 267
BtsI GCAGTG 3 cut(s) 942, 1046, 1077
BtsIMutI CAGTG 4 cut(s) 578, 942, 1046, 1077
Cac8I GCNNGC 2 cut(s) 1053, 1230
CaiI CAGNNNCTG 1 cut(s) 941
CfoI GCGC 2 cut(s) 186, 736
Cfr13I GGNCC 1 cut(s) 177
CseI GACGC 2 cut(s) 622, 1147
Csp6I GTAC 4 cut(s) 12, 274, 526, 1176
CviAII CATG 3 cut(s) 568, 825, 892
CviQI GTAC 4 cut(s) 12, 274, 526, 1176
DdeI CTNAG 4 cut(s) 222, 234, 434, 1123
DpnI GATC 3 cut(s) 248, 996, 1239
DpnII GATC 3 cut(s) 246, 994, 1237
DraIII CACNNNGTG 1 cut(s) 677
Eam1104I CTCTTC 2 cut(s) 853, 1146
EarI CTCTTC 2 cut(s) 853, 1146
Eco130I CCWWGG 1 cut(s) 567
Eco24I GRGCYC 1 cut(s) 1093
Eco47III AGCGCT 1 cut(s) 735
Eco57I CTGAAG 2 cut(s) 860, 1202
EcoRII CCWGG 4 cut(s) 101, 179, 425, 1022
EcoT14I CCWWGG 1 cut(s) 567
EcoT22I ATGCAT 1 cut(s) 1120
EcoT38I GRGCYC 1 cut(s) 1093
ErhI CCWWGG 1 cut(s) 567
Esp3I CGTCTC 4 cut(s) 230, 1124, 1131, 1165
FaeI CATG 3 cut(s) 571, 828, 895
FatI CATG 3 cut(s) 567, 824, 891
FauI CCCGC 1 cut(s) 701
Fnu4HI GCNGC 3 cut(s) 5, 97, 1203
FokI GGATG 4 cut(s) 31, 98, 131, 274
FriOI GRGCYC 1 cut(s) 1093
Fsp4HI GCNGC 3 cut(s) 5, 97, 1203
FspBI CTAG 1 cut(s) 1110
GlaI GCGC 2 cut(s) 185, 735
GluI GCNGC 3 cut(s) 5, 97, 1203
GsaI CCCAGC 1 cut(s) 138
GsuI CTGGAG 2 cut(s) 59, 1262
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 2 cut(s) 178, 420
HapII CCGG 3 cut(s) 161, 293, 356
HgaI GACGC 2 cut(s) 622, 1147
HhaI GCGC 2 cut(s) 186, 736
Hin1I GRCGYC 1 cut(s) 1158
Hin1II CATG 3 cut(s) 571, 828, 895
Hin6I GCGC 2 cut(s) 184, 734
HinP1I GCGC 2 cut(s) 184, 734
HincII GTYRAC 1 cut(s) 1167
HindII GTYRAC 1 cut(s) 1167
HinfI GANTC 4 cut(s) 106, 157, 230, 821
HpaI GTTAAC 1 cut(s) 1167
HpaII CCGG 3 cut(s) 161, 293, 356
HphI GGTGA 4 cut(s) 55, 502, 673, 1198
Hpy166II GTNNAC 1 cut(s) 1167
Hpy188I TCNGA 6 cut(s) 235, 435, 730, 879, 1126, 1182
Hpy8I GTNNAC 1 cut(s) 1167
HpyAV CCTTC 6 cut(s) 40, 109, 202, 448, 823, 1177
HpyCH4III ACNGT 2 cut(s) 241, 582
HpyCH4V TGCA 9 cut(s) 4, 99, 129, 472, 935, 989, 1037, 1118, 1232
HpyF10VI GCNNNNNNNGC 3 cut(s) 494, 731, 1067
HpyF3I CTNAG 4 cut(s) 222, 234, 434, 1123
Hsp92I GRCGYC 1 cut(s) 1158
Hsp92II CATG 3 cut(s) 571, 828, 895
HspAI GCGC 2 cut(s) 184, 734
Kpn2I TCCGGA 2 cut(s) 160, 292
KspAI GTTAAC 1 cut(s) 1167
Kzo9I GATC 3 cut(s) 246, 994, 1237
LmnI GCTCC 3 cut(s) 373, 904, 1096
Lsp1109I GCAGC 3 cut(s) 16, 83, 1214
LweI GCATC 2 cut(s) 195, 734
MaeI CTAG 1 cut(s) 1110
MaeIII GTNAC 2 cut(s) 589, 1100
MalI GATC 3 cut(s) 248, 996, 1239
MbiI CCGCTC 1 cut(s) 1191
MboI GATC 3 cut(s) 246, 994, 1237
MboII GAAGA 8 cut(s) 166, 373, 617, 620, 622, 840, 1163, 1247
MfeI CAATTG 1 cut(s) 467
MflI RGATCY 1 cut(s) 1237
MhlI GDGCHC 1 cut(s) 1093
MluCI AATT 6 cut(s) 467, 541, 547, 573, 917, 1214
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 2 cut(s) 63, 882
Mph1103I ATGCAT 1 cut(s) 1120
MroI TCCGGA 2 cut(s) 160, 292
MseI TTAA 5 cut(s) 201, 315, 392, 1166, 1218
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 3 cut(s) 161, 293, 356
MspR9I CCNGG 5 cut(s) 103, 181, 357, 427, 1024
MunI CAATTG 1 cut(s) 467
MvaI CCWGG 4 cut(s) 103, 181, 427, 1024
MwoI GCNNNNNNNGC 3 cut(s) 494, 731, 1067
NciI CCSGG 1 cut(s) 357
NcoI CCATGG 1 cut(s) 567
NdeII GATC 3 cut(s) 246, 994, 1237
NlaIII CATG 3 cut(s) 571, 828, 895
NlaIV GGNNCC 2 cut(s) 369, 1092
NsiI ATGCAT 1 cut(s) 1120
NspV TTCGAA 1 cut(s) 113
OliI CACNNNNGTG 1 cut(s) 488
PfeI GAWTC 3 cut(s) 106, 157, 821
PkrI GCNGC 3 cut(s) 6, 98, 1204
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PshAI GACNNNNGTC 1 cut(s) 59
Psp6I CCWGG 4 cut(s) 101, 179, 425, 1022
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 4 cut(s) 101, 179, 425, 1022
PspN4I GGNNCC 2 cut(s) 369, 1092
PspPI GGNCC 1 cut(s) 177
PsrI GAACNNNNNNTAC 2 cut(s) 266, 298
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 1 cut(s) 1237
RsaI GTAC 4 cut(s) 13, 275, 527, 1177
RsaNI GTAC 4 cut(s) 12, 274, 526, 1176
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 5 cut(s) 201, 315, 392, 1166, 1218
SatI GCNGC 3 cut(s) 5, 97, 1203
Sau3AI GATC 3 cut(s) 246, 994, 1237
Sau96I GGNCC 1 cut(s) 177
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 5 cut(s) 103, 181, 357, 427, 1024
SduI GDGCHC 1 cut(s) 1093
SfaNI GCATC 2 cut(s) 195, 734
SfuI TTCGAA 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 6 cut(s) 467, 541, 547, 573, 917, 1214
SsiI CCGC 3 cut(s) 488, 708, 1191
SspMI CTAG 1 cut(s) 1110
StyD4I CCNGG 5 cut(s) 101, 179, 355, 425, 1022
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 2 cut(s) 241, 582
TaqI TCGA 2 cut(s) 113, 913
TasI AATT 6 cut(s) 467, 541, 547, 573, 917, 1214
TatI WGTACW 2 cut(s) 11, 273
TfiI GAWTC 3 cut(s) 106, 157, 821
Tru1I TTAA 5 cut(s) 201, 315, 392, 1166, 1218
Tru9I TTAA 5 cut(s) 201, 315, 392, 1166, 1218
TscAI CASTG 4 cut(s) 585, 942, 1053, 1077
TseI GCWGC 3 cut(s) 4, 96, 1202
TspDTI ATGAA 2 cut(s) 813, 1164
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 4 cut(s) 585, 942, 1053, 1077
XapI RAATTY 2 cut(s) 917, 1214
XspI CTAG 1 cut(s) 1110
ZrmI AGTACT 1 cut(s) 13
Zsp2I ATGCAT 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.