Rroxscaffold_6G00419530

Transmembrane protein 87B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003014
Physical Location & Seq
Reverse (-)
40973568 .. 40976750
3183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419530.1

Sequence Viewer

Length: 1170 bp
ATGCTGCACCAAGAATCTTTCCGAGGATGGACAATGCATGGCGGGGAGGTTGTTATCCACAAAAATCCAGACAATCCCGAGTGGCCTAGGCGCATCCAAACATTCTTTAATGGAAAGAACGAAGAGGCTAAAATGGACTCTGAGACGGTTGAGATAAACAGTTCTGGAATGTACTACCTGTATTTTATGTTTTGTAATCCGGAACTCAAGGGCACGCTGATTAAAGGAAGGACTGATTGGAGAAATCCGTATGGTTATTTGCCGGGGAAGATGGCTCCTTTGATGACATTCTATGGCTTAATGTCTTTAGCTTACCTTGTGCTTGGCCTTGCCTGGTTTCTGAGGTTTGTTCAGTTTTGGAAGGATATCATACAACTGCACTACCACATCACAGCGGTGATTGCTCTTGGAATGTGTGAAATGGCTGTCTGGTACTTTGAGTACGTCAATTTCAATTCAACTGGAACCAGACCTATGGGCATTACACTGTGGGCGGTAACCTTTAGCTCTGTCAAGAAGACACTCTCTCGTCTTCTTCTGTTAGTAGTTTCAATGGGCTTTGGTGTGGTGAAGCCTACACTTGGTGGTATAACCCCAAAAGTATTTCTGCTTGGTGTGGTATATTTTATGGCATCAGAAGCACTCGAGCTTATTGAAAATTTGGGGAATATCAATGATTTTTCTGGAAAAGCAAAGTTATTTTTGGTCTTACCAGTTGCCTTCTTAGATTCGTGCTTTATTCTGTGGATTTTCTCTTCATTATCAAAAACTTTGGAGAAACTTCAGATCAGGAGAAACATGGCTAAGTTGGAGCTATATCGAAAATTTACCAACTCTCTCGCAGTGTCTGTGCTTCTGTCAGTGGCCTGGATTGGCTTTGAGCTATATTTCAATGCAACCGATCCATTGAGTGAGTTTTGGCAAATCGCCTGGGTTATTCCTGCATTTTGGACTCTGCTTGCCTACGCTCTCTTGGCAGTGATATGTGTACTCTGGGCTCCATCAAGTAACCCAACTAGATATGCATACTTAGAGGAGACTGGAGATGACTTTGATGAGGAGGGCGTCTCGTTAACAAGTGGTGCTTTGAAGGTGAGTGGAGATACGGCAGCTATGCGAGAATTTAACAATGGGCTTGCAGAAGATCTGGAGGAGGATAAGCGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

389

Amino Acids

44.3

Weight (kDa)

5.56

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 93 - 338 5e-94 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 3 cut(s) 42, 395, 494
AclWI GGATC 1 cut(s) 896
AcsI RAATTY 3 cut(s) 658, 824, 1121
AcuI CTGAAG 1 cut(s) 767
AcyI GRCGYC 1 cut(s) 1065
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 4 cut(s) 173, 434, 443, 990
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 6 cut(s) 454, 459, 552, 656, 892, 1090
AjnI CCWGG 3 cut(s) 332, 866, 929
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 6 cut(s) 311, 507, 649, 814, 883, 1112
AluI AGCT 6 cut(s) 311, 507, 649, 814, 883, 1112
Alw26I GTCTC 3 cut(s) 137, 1031, 1072
AlwI GGATC 1 cut(s) 896
AlwNI CAGNNNCTG 1 cut(s) 848
Ama87I CYCGRG 2 cut(s) 77, 644
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 3 cut(s) 83, 325, 864
ApeKI GCWGC 2 cut(s) 4, 1109
ApoI RAATTY 3 cut(s) 658, 824, 1121
AspA2I CCTAGG 1 cut(s) 86
AspLEI GCGC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 3 cut(s) 409, 580, 1105
AvaI CYCGRG 2 cut(s) 77, 644
AvrII CCTAGG 1 cut(s) 86
BaeGI GKGCMC 1 cut(s) 215
BanII GRGCYC 1 cut(s) 1000
BbsI GAAGAC 2 cut(s) 524, 524
BbvI GCAGC 1 cut(s) 1121
BccI CCATC 3 cut(s) 21, 265, 1009
BceAI ACGGC 1 cut(s) 1122
BciT130I CCWGG 3 cut(s) 334, 868, 931
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 3 cut(s) 137, 1031, 1072
BfaI CTAG 2 cut(s) 87, 1017
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 2 cut(s) 5, 1110
BlnI CCTAGG 1 cut(s) 86
BlsI GCNGC 2 cut(s) 6, 1111
Bme1390I CCNGG 4 cut(s) 264, 334, 868, 931
BmeT110I CYCGRG 2 cut(s) 77, 644
BmiI GGNNCC 3 cut(s) 276, 466, 999
BmrFI CCNGG 4 cut(s) 264, 334, 868, 931
BmsI GCATC 2 cut(s) 102, 641
BpiI GAAGAC 2 cut(s) 524, 524
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
BpmI CTGGAG 2 cut(s) 1062, 1169
BpuEI CTTGAG 1 cut(s) 191
BpuMI CCSGG 1 cut(s) 264
BsaHI GRCGYC 1 cut(s) 1065
BsaJI CCNNGG 4 cut(s) 22, 86, 263, 930
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 3 cut(s) 466, 713, 1045
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 3 cut(s) 334, 868, 931
BseDI CCNNGG 4 cut(s) 22, 86, 263, 930
BseGI GGATG 2 cut(s) 32, 93
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMII CTCAG 2 cut(s) 132, 332
BseNI ACTGG 3 cut(s) 466, 713, 1045
BseRI GAGGAG 3 cut(s) 1049, 1073, 1166
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 1 cut(s) 1121
BsgI GTGCAG 1 cut(s) 362
BshFI GGCC 3 cut(s) 85, 327, 866
BsiHKCI CYCGRG 2 cut(s) 77, 644
BsiSI CCGG 2 cut(s) 200, 263
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 3 cut(s) 137, 1031, 1072
BsmBI CGTCTC 2 cut(s) 137, 1072
BsnI GGCC 3 cut(s) 85, 327, 866
BsoBI CYCGRG 2 cut(s) 77, 644
Bsp1286I GDGCHC 2 cut(s) 215, 1000
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 3 cut(s) 786, 901, 1144
BspACI CCGC 3 cut(s) 42, 395, 494
BspANI GGCC 3 cut(s) 85, 327, 866
BspCNI CTCAG 2 cut(s) 133, 333
BspEI TCCGGA 1 cut(s) 199
BspLI GGNNCC 3 cut(s) 276, 466, 999
BspPI GGATC 1 cut(s) 896
BsrI ACTGG 3 cut(s) 466, 713, 1045
BssECI CCNNGG 4 cut(s) 22, 86, 263, 930
BssMI GATC 3 cut(s) 786, 901, 1144
BssNI GRCGYC 1 cut(s) 1065
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 3 cut(s) 334, 868, 931
Bst4CI ACNGT 3 cut(s) 148, 161, 489
Bst6I CTCTTC 2 cut(s) 117, 760
BstACI GRCGYC 1 cut(s) 1065
BstC8I GCNNGC 3 cut(s) 215, 960, 1137
BstDEI CTNAG 5 cut(s) 141, 341, 724, 804, 1030
BstEII GGTNACC 1 cut(s) 496
BstF5I GGATG 2 cut(s) 32, 93
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 3 cut(s) 789, 904, 1147
BstMAI GTCTC 3 cut(s) 137, 1031, 1072
BstMBI GATC 3 cut(s) 786, 901, 1144
BstMWI GCNNNNNNNGC 3 cut(s) 401, 638, 974
BstNI CCWGG 3 cut(s) 334, 868, 931
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 4 cut(s) 262, 332, 866, 929
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 1121
BstV2I GAAGAC 2 cut(s) 524, 524
BstX2I RGATCY 1 cut(s) 1144
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 1 cut(s) 1144
BsuRI GGCC 3 cut(s) 85, 327, 866
BtsCI GGATG 2 cut(s) 32, 93
BtsI GCAGTG 2 cut(s) 849, 984
BtsIMutI CAGTG 4 cut(s) 485, 849, 867, 984
Cac8I GCNNGC 3 cut(s) 215, 960, 1137
CaiI CAGNNNCTG 1 cut(s) 848
CfoI GCGC 1 cut(s) 93
CseI GACGC 1 cut(s) 1054
Csp6I GTAC 4 cut(s) 172, 433, 442, 989
CviAII CATG 2 cut(s) 38, 799
CviQI GTAC 4 cut(s) 172, 433, 442, 989
DdeI CTNAG 5 cut(s) 141, 341, 724, 804, 1030
DpnI GATC 3 cut(s) 788, 903, 1146
DpnII GATC 3 cut(s) 786, 901, 1144
DraIII CACNNNGTG 1 cut(s) 584
Eam1104I CTCTTC 2 cut(s) 117, 760
EarI CTCTTC 2 cut(s) 117, 760
Eco130I CCWWGG 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 1000
Eco32I GATATC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 767
Eco88I CYCGRG 2 cut(s) 77, 644
Eco91I GGTNACC 1 cut(s) 496
EcoO65I GGTNACC 1 cut(s) 496
EcoRII CCWGG 3 cut(s) 332, 866, 929
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 86
EcoT22I ATGCAT 2 cut(s) 39, 1027
EcoT38I GRGCYC 1 cut(s) 1000
ErhI CCWWGG 1 cut(s) 86
Esp3I CGTCTC 2 cut(s) 137, 1072
FaeI CATG 2 cut(s) 41, 802
FalI AAGNNNNNCTT 2 cut(s) 1069, 1101
FatI CATG 2 cut(s) 37, 798
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 5, 1110
FokI GGATG 2 cut(s) 39, 80
FriOI GRGCYC 1 cut(s) 1000
Fsp4HI GCNGC 2 cut(s) 5, 1110
FspBI CTAG 2 cut(s) 87, 1017
GlaI GCGC 1 cut(s) 92
GluI GCNGC 2 cut(s) 5, 1110
GsuI CTGGAG 2 cut(s) 1062, 1169
HaeIII GGCC 3 cut(s) 85, 327, 866
HapII CCGG 2 cut(s) 200, 263
HgaI GACGC 1 cut(s) 1054
HhaI GCGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 1065
Hin1II CATG 2 cut(s) 41, 802
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 1 cut(s) 1074
HindII GTYRAC 1 cut(s) 1074
HinfI GANTC 4 cut(s) 14, 137, 728, 952
HpaI GTTAAC 1 cut(s) 1074
HpaII CCGG 2 cut(s) 200, 263
HphI GGTGA 3 cut(s) 409, 580, 1105
Hpy166II GTNNAC 2 cut(s) 989, 1074
Hpy188I TCNGA 5 cut(s) 23, 142, 342, 637, 786
Hpy188III TCNNGA 8 cut(s) 68, 77, 165, 200, 514, 684, 790, 1148
Hpy8I GTNNAC 2 cut(s) 989, 1074
HpyAV CCTTC 4 cut(s) 222, 355, 730, 1084
HpyCH4III ACNGT 3 cut(s) 148, 161, 489
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 7 cut(s) 7, 37, 379, 896, 944, 1025, 1139
HpyF10VI GCNNNNNNNGC 3 cut(s) 401, 638, 974
HpyF3I CTNAG 5 cut(s) 141, 341, 724, 804, 1030
HpySE526I ACGT 1 cut(s) 444
Hsp92I GRCGYC 1 cut(s) 1065
Hsp92II CATG 2 cut(s) 41, 802
HspAI GCGC 1 cut(s) 91
Kpn2I TCCGGA 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 1074
Kzo9I GATC 3 cut(s) 786, 901, 1144
LmnI GCTCC 3 cut(s) 280, 811, 1003
Lsp1109I GCAGC 1 cut(s) 1121
LweI GCATC 2 cut(s) 102, 641
MaeI CTAG 2 cut(s) 87, 1017
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 496, 1007
MalI GATC 3 cut(s) 788, 903, 1146
MboI GATC 3 cut(s) 786, 901, 1144
MboII GAAGA 7 cut(s) 134, 280, 524, 527, 529, 747, 1154
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 2 cut(s) 215, 1000
MluCI AATT 5 cut(s) 448, 454, 658, 824, 1121
MlyI GAGTC 2 cut(s) 131, 946
MmeI TCCRAC 1 cut(s) 789
MnlI CCTC 9 cut(s) 17, 40, 118, 336, 1027, 1051, 1054, 1144, 1147
Mph1103I ATGCAT 2 cut(s) 39, 1027
MroI TCCGGA 1 cut(s) 199
MseI TTAA 5 cut(s) 108, 222, 299, 1073, 1125
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 1 cut(s) 395
MspI CCGG 2 cut(s) 200, 263
MspR9I CCNGG 4 cut(s) 264, 334, 868, 931
MvaI CCWGG 3 cut(s) 334, 868, 931
MwoI GCNNNNNNNGC 3 cut(s) 401, 638, 974
NciI CCSGG 1 cut(s) 264
NdeII GATC 3 cut(s) 786, 901, 1144
NlaIII CATG 2 cut(s) 41, 802
NlaIV GGNNCC 3 cut(s) 276, 466, 999
NsiI ATGCAT 2 cut(s) 39, 1027
OliI CACNNNNGTG 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 644
PfeI GAWTC 2 cut(s) 14, 728
PkrI GCNGC 2 cut(s) 6, 1111
PleI GAGTC 2 cut(s) 131, 946
PpsI GAGTC 2 cut(s) 131, 946
Psp6I CCWGG 3 cut(s) 332, 866, 929
PspEI GGTNACC 1 cut(s) 496
PspGI CCWGG 3 cut(s) 332, 866, 929
PspN4I GGNNCC 3 cut(s) 276, 466, 999
PspXI VCTCGAGB 1 cut(s) 644
PstNI CAGNNNCTG 1 cut(s) 848
PsuI RGATCY 1 cut(s) 1144
RsaI GTAC 4 cut(s) 173, 434, 443, 990
RsaNI GTAC 4 cut(s) 172, 433, 442, 989
RseI CAYNNNNRTG 1 cut(s) 395
SaqAI TTAA 5 cut(s) 108, 222, 299, 1073, 1125
SatI GCNGC 2 cut(s) 5, 1110
Sau3AI GATC 3 cut(s) 786, 901, 1144
SchI GAGTC 2 cut(s) 131, 946
ScrFI CCNGG 4 cut(s) 264, 334, 868, 931
SduI GDGCHC 2 cut(s) 215, 1000
SfaNI GCATC 2 cut(s) 102, 641
Sfr274I CTCGAG 1 cut(s) 644
SlaI CTCGAG 1 cut(s) 644
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 2 cut(s) 206, 644
SmoI CTYRAG 2 cut(s) 206, 644
Sse9I AATT 5 cut(s) 448, 454, 658, 824, 1121
SsiI CCGC 3 cut(s) 42, 395, 494
SspMI CTAG 2 cut(s) 87, 1017
StyD4I CCNGG 4 cut(s) 262, 332, 866, 929
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 3 cut(s) 148, 161, 489
TaiI ACGT 1 cut(s) 447
TaqI TCGA 2 cut(s) 645, 820
TasI AATT 5 cut(s) 448, 454, 658, 824, 1121
TatI WGTACW 2 cut(s) 171, 988
TfiI GAWTC 2 cut(s) 14, 728
Tru1I TTAA 5 cut(s) 108, 222, 299, 1073, 1125
Tru9I TTAA 5 cut(s) 108, 222, 299, 1073, 1125
TscAI CASTG 4 cut(s) 492, 849, 867, 984
TseI GCWGC 2 cut(s) 4, 1109
TspDTI ATGAA 1 cut(s) 747
TspGWI ACGGA 1 cut(s) 237
TspRI CASTG 4 cut(s) 492, 849, 867, 984
XapI RAATTY 3 cut(s) 658, 824, 1121
XhoI CTCGAG 1 cut(s) 644
XmaJI CCTAGG 1 cut(s) 86
XspI CTAG 2 cut(s) 87, 1017
Zsp2I ATGCAT 2 cut(s) 39, 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.