FvH4_7g26010

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003014
Physical Location & Seq
Reverse (-)
19772065 .. 19775412
3348 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26010.t2

Sequence Viewer

Length: 1602 bp
ATGCTGGGTCACAGAGAGAGCATCAAGTTTGATCTTCATTCAAATGGGTTCATAATCATTTTAATGCTAGTGTACTTGAACAGATTCGTGGGTGCTTCGATCCACGAGTACCAAAACGAAACCTTTATTCGTCGTTCCAATTCATTCTTCTTCCATGGCGGAAGTGAGGGTCTCTATGCGTCCAGACTTCACTCTCATAATGAGAAGCTCGCTTCTGAAGACAAGATCATTGATGGCAAGTCCTTTATCAGGTTTGAATCGATCACCTTTCGACGGACCAAGGAATCTGCTGAAATGAAGAATGAGATGCAGCAGAGGACCGGCTTGGTTGAGGCTATAGTGCTTGAGGTTAGAGACAGGGAGAAGATTGGGGGGTCTTATTTGAACTCTGAGGCCATATGCTGTACACCTCAGCTTTCCAAGGATGGTTCTTGCAAGGTGGGGGAGGTTATCATACAACAAAATCCTGACAACCCTGATGGGCCAAAAAGGATGCAGACCTTCTTTGAGGGGAAAAATGAAGAGACTAATATGGACCTTCAGACTATTGAGATCAACAGCACTGGAATGTACTATCTTTATTTCATGTTTTGTGATCCAGAACTTGTTGGCACATCAATCAGTGGAAGAACTGTTTGGAGAAACCCGGATGGTTATTTACCTGGAAAGATGGCGCCGCTAATGACATTTTTCGGCCTTGTGTCTTTAGCTTACCTTGTTCTTGGTCTTTTCTGGTTTCTCCGCTTTGGGCAGTATTGGAAAGACATAATACAGTTGCACTATCACATTAGTGCTGTTATTGGTCTTGGAATGTGTGAGATGGCTCTATGGTATTTTGAGTATGCAAATTTTAATTCTACCGGAACCAGGCCAATGGGAATTACCATATGGGCAGTGAGCTTTGGTGCTGTCAAAAAAACTGTTTCCCGGCTTCTTCTTCTGGTGGTTTCAATGGGGTATGGTGTTGTGCGGCCAACCCTTGGTGGCATAACCTCGAAAGTACTACTCCTTGGTGTGATATACTTTGTAGCCTCAGAAGCACTTGAGCTTGTTGAGCATTTGGGAAATATCAATGACTTCTCTGGAAAAACAAGGCTTTTTCTGGTGCTACCGGTTGCTCTATTGGATGCCTGTTTTATTCTTTGGATCTTTTCATCATTGTCGAAAACTTTGGAGAAGCTTCAGATTCGAAGAAGCATGGCCAAACTTGAGCTCTACCGAAAGTTTACCAATGCCCTTGCAGTATCAGTGTTGGTGTCTGTTGCTTGGATTGGTTATGAGTTGTATTTCAATGCAAGTGATCCATTGAGTGAACTGTGGCGACGAGCCTGGATCATCTCAGCTTTCTGGGTTTTGCTTGCATACTTACTGTTGGTAGTGATATGTGTTCTCTGGGCTCCATCTCAGAACCCTACCGGATATGCATACTCCGAGGAGACTGTGGATGACTTCGATGAGGAGGCTATCTCGCTCACTGGAGGAAGTGGAGTTAAGGTGACCGGCATTGACTTGGCAAGCAAGCTAGAAAGAAAGGAAAGAAAGCTATCATTTTCAGCAGATCATTTGTTTCTTGGGGAAGATGAGGAGGATAAGAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

534

Amino Acids

60.42

Weight (kDa)

5.91

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 226 - 396 2.3e-60 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 673
AccB7I CCANNNNNTGG 1 cut(s) 980
AciI CCGC 4 cut(s) 159, 677, 742, 970
AclWI GGATC 5 cut(s) 94, 590, 1154, 1295, 1340
AcoI YGGCCR 2 cut(s) 971, 1200
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 3 cut(s) 237, 524, 1166
AcyI GRCGYC 1 cut(s) 674
AfaI GTAC 5 cut(s) 74, 110, 406, 572, 1002
AfiI CCNNNNNNNGG 4 cut(s) 249, 273, 867, 980
AgeI ACCGGT 1 cut(s) 1111
AgsI TTSAA 6 cut(s) 42, 79, 257, 385, 951, 1291
AjnI CCWGG 3 cut(s) 661, 866, 1328
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 619, 651
AleI CACNNNNGTG 1 cut(s) 789
Alw21I GWGCWC 1 cut(s) 1215
Alw26I GTCTC 4 cut(s) 176, 348, 518, 1430
AlwI GGATC 5 cut(s) 94, 590, 1154, 1295, 1340
AoxI GGCC 6 cut(s) 393, 482, 694, 869, 971, 1200
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 847
AsiGI ACCGGT 1 cut(s) 1111
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 4 cut(s) 276, 318, 482, 535
AsuC2I CCSGG 2 cut(s) 647, 928
AsuHPI GGTGA 2 cut(s) 256, 1507
AsuII TTCGAA 1 cut(s) 1189
AvaII GGWCC 3 cut(s) 276, 318, 535
BalI TGGCCA 1 cut(s) 1202
BanI GGYRCC 1 cut(s) 673
BanII GRGCYC 2 cut(s) 1215, 1399
BauI CACGAG 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 1215
BbvCI CCTCAGC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 322
BccI CCATC 7 cut(s) 227, 419, 473, 644, 664, 814, 1408
BciT130I CCWGG 3 cut(s) 663, 868, 1330
BcnI CCSGG 2 cut(s) 647, 928
BcoDI GTCTC 4 cut(s) 176, 348, 518, 1430
BfaI CTAG 2 cut(s) 68, 1523
BfmI CTRYAG 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 677
BisI GCNGC 3 cut(s) 311, 677, 971
BlsI GCNGC 3 cut(s) 312, 678, 972
BmcAI AGTACT 1 cut(s) 1002
Bme1390I CCNGG 5 cut(s) 647, 663, 868, 928, 1330
Bme18I GGWCC 3 cut(s) 276, 318, 535
BmgT120I GGNCC 4 cut(s) 276, 318, 482, 535
BmiI GGNNCC 3 cut(s) 675, 865, 1398
BmrFI CCNGG 5 cut(s) 647, 663, 868, 928, 1330
BmsI GCATC 4 cut(s) 30, 297, 483, 1117
BpiI GAAGAC 1 cut(s) 225
BplI GAGNNNNNCTC 2 cut(s) 1451, 1483
BpmI CTGGAG 1 cut(s) 1497
Bpu10I CCTNAGC 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 1189
BpuEI CTTGAG 3 cut(s) 365, 1064, 1229
BpuMI CCSGG 2 cut(s) 647, 928
Bsa29I ATCGAT 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 674
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 6 cut(s) 154, 279, 420, 979, 1009, 1431
BsaWI WCCGGW 3 cut(s) 860, 1111, 1415
BsaXI ACNNNNNCTCC 2 cut(s) 1479, 1509
Bsc4I CCNNNNNNNGG 4 cut(s) 249, 273, 867, 980
Bse118I RCCGGY 3 cut(s) 320, 1111, 1499
Bse1I ACTGG 2 cut(s) 568, 1480
BseBI CCWGG 3 cut(s) 663, 868, 1330
BseCI ATCGAT 1 cut(s) 260
BseDI CCNNGG 6 cut(s) 154, 279, 420, 979, 1009, 1431
BseGI GGATG 5 cut(s) 430, 498, 655, 1132, 1450
BseLI CCNNNNNNNGG 4 cut(s) 249, 273, 867, 980
BseMII CTCAG 5 cut(s) 381, 425, 1047, 1353, 1418
BseNI ACTGG 2 cut(s) 568, 1480
BseRI GAGGAG 3 cut(s) 1448, 1472, 1598
BseXI GCAGC 1 cut(s) 322
BseYI CCCAGC 1 cut(s) 4
BshFI GGCC 6 cut(s) 395, 484, 696, 871, 973, 1202
BshNI GGYRCC 1 cut(s) 673
BshTI ACCGGT 1 cut(s) 1111
BshVI ATCGAT 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 1215
BsiSI CCGG 7 cut(s) 321, 647, 861, 928, 1112, 1416, 1500
BslI CCNNNNNNNGG 4 cut(s) 249, 273, 867, 980
BsmAI GTCTC 4 cut(s) 176, 348, 518, 1430
BsnI GGCC 6 cut(s) 395, 484, 696, 871, 973, 1202
Bso31I GGTCTC 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 1189
Bsp1286I GDGCHC 2 cut(s) 1215, 1399
Bsp1407I TGTACA 1 cut(s) 404
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 4 cut(s) 159, 677, 742, 970
BspANI GGCC 6 cut(s) 395, 484, 696, 871, 973, 1202
BspCNI CTCAG 5 cut(s) 382, 424, 1046, 1352, 1417
BspDI ATCGAT 1 cut(s) 260
BspLI GGNNCC 3 cut(s) 675, 865, 1398
BspPI GGATC 5 cut(s) 94, 590, 1154, 1295, 1340
BspT104I TTCGAA 1 cut(s) 1189
BspT107I GGYRCC 1 cut(s) 673
BspTNI GGTCTC 1 cut(s) 176
BsrFI RCCGGY 3 cut(s) 320, 1111, 1499
BsrGI TGTACA 1 cut(s) 404
BsrI ACTGG 2 cut(s) 568, 1480
BssAI RCCGGY 3 cut(s) 320, 1111, 1499
BssECI CCNNGG 6 cut(s) 154, 279, 420, 979, 1009, 1431
BssNI GRCGYC 1 cut(s) 674
BssSI CACGAG 1 cut(s) 104
BssT1I CCWWGG 5 cut(s) 154, 279, 420, 979, 1009
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 3 cut(s) 663, 868, 1330
Bst4CI ACNGT 6 cut(s) 634, 774, 922, 1317, 1371, 1441
Bst6I CTCTTC 1 cut(s) 516
BstACI GRCGYC 1 cut(s) 674
BstAUI TGTACA 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 1189
BstC8I GCNNGC 4 cut(s) 210, 1359, 1516, 1520
BstDEI CTNAG 5 cut(s) 390, 411, 1033, 1339, 1404
BstDSI CCRYGG 1 cut(s) 154
BstEII GGTNACC 1 cut(s) 1495
BstENI CCTNNNNNAGG 1 cut(s) 247
BstF5I GGATG 5 cut(s) 430, 498, 655, 1132, 1450
BstH2I RGCGCY 1 cut(s) 677
BstHHI GCGC 1 cut(s) 676
BstMAI GTCTC 4 cut(s) 176, 348, 518, 1430
BstMWI GCNNNNNNNGC 2 cut(s) 1037, 1054
BstNI CCWGG 3 cut(s) 663, 868, 1330
BstPI GGTNACC 1 cut(s) 1495
BstSCI CCNGG 5 cut(s) 645, 661, 866, 926, 1328
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 1146
BstXI CCANNNNNNTGG 1 cut(s) 874
BstYI RGATCY 1 cut(s) 1146
Bsu15I ATCGAT 1 cut(s) 260
BsuRI GGCC 6 cut(s) 395, 484, 696, 871, 973, 1202
BsuTUI ATCGAT 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 154
BtsCI GGATG 5 cut(s) 430, 498, 655, 1132, 1450
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 5 cut(s) 561, 628, 900, 1254, 1473
Cac8I GCNNGC 4 cut(s) 210, 1359, 1516, 1520
CfoI GCGC 1 cut(s) 676
Cfr10I RCCGGY 3 cut(s) 320, 1111, 1499
Cfr13I GGNCC 4 cut(s) 276, 318, 482, 535
ClaI ATCGAT 1 cut(s) 260
CseI GACGC 1 cut(s) 168
Csp6I GTAC 5 cut(s) 73, 109, 405, 571, 1001
CspAI ACCGGT 1 cut(s) 1111
CviAII CATG 3 cut(s) 155, 586, 1198
CviQI GTAC 5 cut(s) 73, 109, 405, 571, 1001
DdeI CTNAG 5 cut(s) 390, 411, 1033, 1339, 1404
DinI GGCGCC 1 cut(s) 675
EaeI YGGCCR 2 cut(s) 971, 1200
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
EciI GGCGGA 1 cut(s) 174
Ecl136II GAGCTC 1 cut(s) 1213
Eco130I CCWWGG 5 cut(s) 154, 279, 420, 979, 1009
Eco24I GRGCYC 2 cut(s) 1215, 1399
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 3 cut(s) 276, 318, 535
Eco53kI GAGCTC 1 cut(s) 1213
Eco57I CTGAAG 3 cut(s) 237, 524, 1166
Eco91I GGTNACC 1 cut(s) 1495
EcoICRI GAGCTC 1 cut(s) 1213
EcoNI CCTNNNNNAGG 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 1495
EcoRII CCWGG 3 cut(s) 661, 866, 1328
EcoT14I CCWWGG 5 cut(s) 154, 279, 420, 979, 1009
EcoT22I ATGCAT 1 cut(s) 1426
EcoT38I GRGCYC 2 cut(s) 1215, 1399
EgeI GGCGCC 1 cut(s) 675
EheI GGCGCC 1 cut(s) 675
ErhI CCWWGG 5 cut(s) 154, 279, 420, 979, 1009
FaeI CATG 3 cut(s) 158, 589, 1201
FatI CATG 3 cut(s) 154, 585, 1197
FauNDI CATATG 2 cut(s) 398, 887
Fnu4HI GCNGC 3 cut(s) 311, 677, 971
FokI GGATG 5 cut(s) 437, 505, 662, 1139, 1457
FriOI GRGCYC 2 cut(s) 1215, 1399
Fsp4HI GCNGC 3 cut(s) 311, 677, 971
FspBI CTAG 2 cut(s) 68, 1523
GlaI GCGC 1 cut(s) 675
GluI GCNGC 3 cut(s) 311, 677, 971
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 1497
HaeII RGCGCY 1 cut(s) 677
HaeIII GGCC 6 cut(s) 395, 484, 696, 871, 973, 1202
HapII CCGG 7 cut(s) 321, 647, 861, 928, 1112, 1416, 1500
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 676
Hin1I GRCGYC 1 cut(s) 674
Hin1II CATG 3 cut(s) 158, 589, 1201
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HindIII AAGCTT 1 cut(s) 1178
HinfI GANTC 4 cut(s) 84, 257, 284, 1186
HpaII CCGG 7 cut(s) 321, 647, 861, 928, 1112, 1416, 1500
HphI GGTGA 2 cut(s) 256, 1507
Hpy166II GTNNAC 4 cut(s) 73, 407, 1227, 1313
Hpy188I TCNGA 7 cut(s) 217, 391, 543, 1036, 1185, 1407, 1432
Hpy188III TCNNGA 4 cut(s) 183, 467, 599, 1083
Hpy8I GTNNAC 4 cut(s) 73, 407, 1227, 1313
Hpy99I CGWCG 3 cut(s) 135, 276, 1326
HpyAV CCTTC 2 cut(s) 511, 548
HpyCH4III ACNGT 6 cut(s) 634, 774, 922, 1317, 1371, 1441
HpyCH4V TGCA 9 cut(s) 310, 435, 496, 778, 845, 1241, 1295, 1361, 1424
HpyF10VI GCNNNNNNNGC 2 cut(s) 1037, 1054
HpyF3I CTNAG 5 cut(s) 390, 411, 1033, 1339, 1404
Hsp92I GRCGYC 1 cut(s) 674
Hsp92II CATG 3 cut(s) 158, 589, 1201
HspAI GCGC 1 cut(s) 674
KasI GGCGCC 1 cut(s) 673
LmnI GCTCC 1 cut(s) 1402
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 4 cut(s) 30, 297, 483, 1117
MaeI CTAG 2 cut(s) 68, 1523
MaeIII GTNAC 2 cut(s) 8, 1495
MflI RGATCY 1 cut(s) 1146
MhlI GDGCHC 2 cut(s) 1215, 1399
MlsI TGGCCA 1 cut(s) 1202
MluCI AATT 4 cut(s) 139, 847, 853, 879
MluNI TGGCCA 1 cut(s) 1202
Mly113I GGCGCC 1 cut(s) 674
Mox20I TGGCCA 1 cut(s) 1202
Mph1103I ATGCAT 1 cut(s) 1426
MroXI GAANNNNTTC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 1202
MseI TTAA 3 cut(s) 62, 852, 1491
MslI CAYNNNNRTG 4 cut(s) 42, 62, 566, 789
Msp20I TGGCCA 1 cut(s) 1202
MspI CCGG 7 cut(s) 321, 647, 861, 928, 1112, 1416, 1500
MspR9I CCNGG 5 cut(s) 647, 663, 868, 928, 1330
MvaI CCWGG 3 cut(s) 663, 868, 1330
MwoI GCNNNNNNNGC 2 cut(s) 1037, 1054
NarI GGCGCC 1 cut(s) 674
NciI CCSGG 2 cut(s) 647, 928
NcoI CCATGG 1 cut(s) 154
NdeI CATATG 2 cut(s) 398, 887
NlaIII CATG 3 cut(s) 158, 589, 1201
NlaIV GGNNCC 3 cut(s) 675, 865, 1398
NmuCI GTSAC 2 cut(s) 8, 1495
NsiI ATGCAT 1 cut(s) 1426
NspV TTCGAA 1 cut(s) 1189
OliI CACNNNNGTG 1 cut(s) 789
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 4 cut(s) 84, 257, 284, 1186
PflMI CCANNNNNTGG 1 cut(s) 980
PinAI ACCGGT 1 cut(s) 1111
PkrI GCNGC 3 cut(s) 312, 678, 972
PluTI GGCGCC 1 cut(s) 677
Psp124BI GAGCTC 1 cut(s) 1215
Psp6I CCWGG 3 cut(s) 661, 866, 1328
PspEI GGTNACC 1 cut(s) 1495
PspFI CCCAGC 1 cut(s) 4
PspGI CCWGG 3 cut(s) 661, 866, 1328
PspN4I GGNNCC 3 cut(s) 675, 865, 1398
PspPI GGNCC 4 cut(s) 276, 318, 482, 535
PsuI RGATCY 1 cut(s) 1146
RsaI GTAC 5 cut(s) 74, 110, 406, 572, 1002
RsaNI GTAC 5 cut(s) 73, 109, 405, 571, 1001
RseI CAYNNNNRTG 4 cut(s) 42, 62, 566, 789
SacI GAGCTC 1 cut(s) 1215
SaqAI TTAA 3 cut(s) 62, 852, 1491
SatI GCNGC 3 cut(s) 311, 677, 971
Sau96I GGNCC 4 cut(s) 276, 318, 482, 535
ScaI AGTACT 1 cut(s) 1002
ScrFI CCNGG 5 cut(s) 647, 663, 868, 928, 1330
SduI GDGCHC 2 cut(s) 1215, 1399
SfaNI GCATC 4 cut(s) 30, 297, 483, 1117
SfcI CTRYAG 1 cut(s) 336
SfoI GGCGCC 1 cut(s) 675
SfuI TTCGAA 1 cut(s) 1189
SinI GGWCC 3 cut(s) 276, 318, 535
SmiMI CAYNNNNRTG 4 cut(s) 42, 62, 566, 789
SmlI CTYRAG 3 cut(s) 344, 1043, 1208
SmoI CTYRAG 3 cut(s) 344, 1043, 1208
Sse9I AATT 4 cut(s) 139, 847, 853, 879
SsiI CCGC 4 cut(s) 159, 677, 742, 970
SspDI GGCGCC 1 cut(s) 673
SspMI CTAG 2 cut(s) 68, 1523
SstI GAGCTC 1 cut(s) 1215
StyD4I CCNGG 5 cut(s) 645, 661, 866, 926, 1328
StyI CCWWGG 5 cut(s) 154, 279, 420, 979, 1009
TaaI ACNGT 6 cut(s) 634, 774, 922, 1317, 1371, 1441
TaqI TCGA 7 cut(s) 98, 260, 271, 995, 1163, 1189, 1452
TasI AATT 4 cut(s) 139, 847, 853, 879
TatI WGTACW 4 cut(s) 72, 404, 570, 1000
TauI GCSGC 2 cut(s) 679, 973
TfiI GAWTC 4 cut(s) 84, 257, 284, 1186
Tru1I TTAA 3 cut(s) 62, 852, 1491
Tru9I TTAA 3 cut(s) 62, 852, 1491
TscAI CASTG 5 cut(s) 568, 628, 900, 1254, 1480
TseFI GTSAC 2 cut(s) 8, 1495
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 2 cut(s) 8, 1495
TspDTI ATGAA 7 cut(s) 26, 40, 132, 311, 534, 574, 1143
TspGWI ACGGA 1 cut(s) 289
TspRI CASTG 5 cut(s) 568, 628, 900, 1254, 1480
Van91I CCANNNNNTGG 1 cut(s) 980
VpaK11BI GGWCC 3 cut(s) 276, 318, 535
XagI CCTNNNNNAGG 1 cut(s) 247
XapI RAATTY 1 cut(s) 847
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 2 cut(s) 68, 1523
ZrmI AGTACT 1 cut(s) 1002
Zsp2I ATGCAT 1 cut(s) 1426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.