Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003014

Physical Location & Seq

Genomic Coordinates Forward (+)

48532153 .. 48535374

Gene Structure 3222 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0371700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGACCTGCAGAACTTGGCTTCACATGGAACTAGAAGCGCTGAGAGTCCGCCTCACCAAGGTACTTTGGCAGTTCATCCAATATTTTCTGTTGCATTATGTTCAAAGTTCGTAGATGCTGAAGTTGCTTCTTTCTCCGTTGATACAGATATATGTGGGGATATCAAAATTGACACCAACACTACCAGAGGAAGAGAAATGCACCAAAATCTCCTGACGATACTTCAGAAGATAATAATATATCTCTTGGAAAAGCTAATTGGGATGCCAATCCGTTACAGTTACAAGGATCTTAAAACTGCAACTAACAACTTCTCAAATAAGCTTGGGCTAGGAGGTTTTGGCTCAGTTTACTTAGGGGTTCTCCCAGATGGAACTCGACTTGCTGTGAAGAAGTTGGAAGCCAATAAATGTCAGGGAAAGAAAGATTTTCAAGCTGAAGTTCCGGGGCTTCTGTGCAAAAGGAAGCTATCGACTTCTTGCCTACGAGTACATGGCAAATGGATCCCTGGACAAATGGATTTTCAGGAAAAAAAAAATGAAGAGTTCGTATGGGATTGGGAGACAAGATTCAACATAGCAGTGGGTATTGCCAAAGGACTAGCTTATCTCCATGAAGATTGTGATTTGAAGATTATTCACTGTGACATAAAACCAGCAAATGTGCTCCTTGACGACAATTACCATGCCAAAATCTCAGATTTTGGTCTGGCAAAGCTGGTGACCAGGGAGCAGAGCCATCTCCTCCCAACAGCAGCGCGAGGAACTATGGGATACATTGCCCCAGAGTGGTTCTATAAAAATCTGGGTGATGTTTCGGAGAGAAGTGACGTGTACAGCTATGGAATGCTGCTGCTGCTGGAGATCATTAGCGGAAGAAAGAACTTGGACGCATATCAATCCATCTCTGATGAAATTTATTTTCCATCGTATGCCTCCAAAATGTTGGAAGAAGGGAAACTCAAGGACATCTTCGACTCCAAGATGAGGATAGATGACGTTGACGAGAGGGTTTCTACTGCGATAGACATGACTTTGAGGCCACCAATGACCAAGGTTGTCCAAATGCTTGAAGGCATCTGCTCTGTTCCTCAGCCTCCAACTTCCTCGATTATCTTCAAACCGATGAGCGAAGGGGGGACTTCCTTGGGTCCATCGGACTGCAACAGCGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

392

Amino Acids

43.64

Weight (kDa)

6.03

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	187 - 297	3.5e-24	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	187 - 298	3.7e-20	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61670 AT1G61670
fragaria_vesca	FvH4_6g09800 FvH4_6g09800 FvH4_6g09800 FvH4_6g09800 FvH4_7g26010 FvH4_7g26010
malus_domestica	MD01G1168400.v1.1 MD07G1234400.v1.1 MD12G1189000.v1.1
prunus_persica	Prupe.2G264800_v2.0.a1 Prupe.6G294600_v2.0.a1
pyrus_communis	pycom01g18130 pycom07g21210 pycom12g17640
rosa_chinensis	RchiOBHm_Chr1g0372411 RchiOBHm_Chr3g0460391
rosa_laevigata	RLG00000025015 RLG00000026901
rosa_multiflora	Rmu_sc0001755.1_g000004 Rmu_sc0004267.1_g000014
rosa_roxburghii	Rroxscaffold_6G00419530
rosa_rugosa	Rorug01G0371500 Rorug01G0371600 Rorug01G0371700 Rorug01G0371700 Rorug03G0042500
rosa_samantha	Rh1AG380200 Rh1BG343700 Rh1CG357200 Rh1DG374900 Rh3AG100400 Rh3BG104400 Rh3CG106100 Rh3DG105700
rosa_wichuraiana	Rw1G033420 Rw3G008530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	15
AccII	CGCG	1 cut(s)	760
AciI	CCGC	2 cut(s)	50, 873
AclWI	GGATC	3 cut(s)	297, 499, 512
AcsI	RAATTY	1 cut(s)	915
AcuI	CTGAAG	3 cut(s)	141, 209, 459
AfaI	GTAC	3 cut(s)	64, 492, 836
AfeI	AGCGCT	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	59, 789, 987
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	6 cut(s)	105, 434, 574, 631, 1073, 1120
AjiI	CACGTC	1 cut(s)	832
AjnI	CCWGG	2 cut(s)	508, 725
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	7 cut(s)	256, 325, 437, 469, 605, 718, 840
AluI	AGCT	7 cut(s)	256, 325, 437, 469, 605, 718, 840
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	1 cut(s)	557
AlwI	GGATC	3 cut(s)	297, 499, 512
Aor51HI	AGCGCT	1 cut(s)	40
AoxI	GGCC	1 cut(s)	1040
ApeKI	GCWGC	4 cut(s)	755, 850, 853, 856
ApoI	RAATTY	1 cut(s)	915
AspLEI	GCGC	2 cut(s)	41, 760
AspS9I	GGNCC	2 cut(s)	4, 1151
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	3 cut(s)	47, 733, 821
AvaII	GGWCC	2 cut(s)	4, 1151
BamHI	GGATCC	1 cut(s)	504
Bbv12I	GWGCWC	1 cut(s)	669
BbvCI	CCTCAGC	1 cut(s)	1092
BbvI	GCAGC	4 cut(s)	767, 837, 840, 843
BccI	CCATC	5 cut(s)	365, 747, 911, 934, 1162
BciT130I	CCWGG	2 cut(s)	510, 727
BciVI	GTATCC	1 cut(s)	767
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	1 cut(s)	557
BfaI	CTAG	3 cut(s)	33, 332, 602
BfmI	CTRYAG	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	15
BfuI	GTATCC	1 cut(s)	767
BisI	GCNGC	4 cut(s)	756, 851, 854, 857
BlsI	GCNGC	4 cut(s)	757, 852, 855, 858
Bme1390I	CCNGG	3 cut(s)	447, 510, 727
Bme18I	GGWCC	2 cut(s)	4, 1151
BmgBI	CACGTC	1 cut(s)	832
BmgT120I	GGNCC	2 cut(s)	4, 1151
BmiI	GGNNCC	2 cut(s)	506, 1152
BmrFI	CCNGG	3 cut(s)	447, 510, 727
BmsI	GCATC	4 cut(s)	106, 255, 1086, 1162
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	1 cut(s)	881
Bpu10I	CCTNAGC	1 cut(s)	1092
BpuEI	CTTGAG	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	447
BsaBI	GATNNNNATC	1 cut(s)	269
BsaJI	CCNNGG	6 cut(s)	58, 446, 508, 726, 1053, 1146
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 789, 987
Bse3DI	GCAATG	1 cut(s)	777
Bse8I	GATNNNNATC	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	510, 727
BseDI	CCNNGG	6 cut(s)	58, 446, 508, 726, 1053, 1146
BseGI	GGATG	2 cut(s)	76, 270
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	3 cut(s)	59, 789, 987
BseMI	GCAATG	1 cut(s)	777
BseMII	CTCAG	4 cut(s)	33, 360, 711, 1106
BseRI	GAGGAG	1 cut(s)	734
BseXI	GCAGC	4 cut(s)	767, 837, 840, 843
Bsh1236I	CGCG	1 cut(s)	760
BshFI	GGCC	1 cut(s)	1042
BsiHKAI	GWGCWC	1 cut(s)	669
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	1153
BslI	CCNNNNNNNGG	3 cut(s)	59, 789, 987
BsmAI	GTCTC	1 cut(s)	557
BsmFI	GGGAC	1 cut(s)	1153
BsmI	GAATGC	1 cut(s)	852
BsnI	GGCC	1 cut(s)	1042
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp1407I	TGTACA	1 cut(s)	834
Bsp143I	GATC	3 cut(s)	289, 504, 864
BspACI	CCGC	2 cut(s)	50, 873
BspANI	GGCC	1 cut(s)	1042
BspCNI	CTCAG	4 cut(s)	34, 359, 710, 1105
BspFNI	CGCG	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	506, 1152
BspMAI	CTGCAG	1 cut(s)	12
BspMI	ACCTGC	1 cut(s)	15
BspPI	GGATC	3 cut(s)	297, 499, 512
BsrDI	GCAATG	1 cut(s)	777
BsrGI	TGTACA	1 cut(s)	834
BssECI	CCNNGG	6 cut(s)	58, 446, 508, 726, 1053, 1146
BssMI	GATC	3 cut(s)	289, 504, 864
BssT1I	CCWWGG	3 cut(s)	58, 1053, 1146
Bst2UI	CCWGG	2 cut(s)	510, 727
Bst4CI	ACNGT	2 cut(s)	281, 644
Bst6I	CTCTTC	2 cut(s)	187, 537
BstAUI	TGTACA	1 cut(s)	834
BstDEI	CTNAG	5 cut(s)	42, 346, 355, 697, 1092
BstEII	GGTNACC	1 cut(s)	721
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	76, 270
BstFNI	CGCG	1 cut(s)	760
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 760
BstKTI	GATC	3 cut(s)	292, 507, 867
BstMAI	GTCTC	1 cut(s)	557
BstMBI	GATC	3 cut(s)	289, 504, 864
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 856
BstNI	CCWGG	2 cut(s)	510, 727
BstPI	GGTNACC	1 cut(s)	721
BstSCI	CCNGG	3 cut(s)	445, 508, 725
BstSFI	CTRYAG	1 cut(s)	8
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	4 cut(s)	767, 837, 840, 843
BstX2I	RGATCY	2 cut(s)	289, 504
BstXI	CCANNNNNNTGG	1 cut(s)	946
BstYI	RGATCY	2 cut(s)	289, 504
BsuI	GTATCC	1 cut(s)	767
BsuRI	GGCC	1 cut(s)	1042
BtrI	CACGTC	1 cut(s)	832
BtsCI	GGATG	2 cut(s)	76, 270
BtsI	GCAGTG	1 cut(s)	588
BtsIMutI	CAGTG	2 cut(s)	588, 640
BveI	ACCTGC	1 cut(s)	15
CfoI	GCGC	2 cut(s)	41, 760
Cfr13I	GGNCC	2 cut(s)	4, 1151
CseI	GACGC	1 cut(s)	899
Csp6I	GTAC	3 cut(s)	63, 491, 835
CviAII	CATG	5 cut(s)	26, 494, 614, 686, 1030
CviQI	GTAC	3 cut(s)	63, 491, 835
DdeI	CTNAG	5 cut(s)	42, 346, 355, 697, 1092
DpnI	GATC	3 cut(s)	291, 506, 866
DpnII	GATC	3 cut(s)	289, 504, 864
Eam1104I	CTCTTC	2 cut(s)	187, 537
EarI	CTCTTC	2 cut(s)	187, 537
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	3 cut(s)	58, 1053, 1146
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	4, 1151
Eco47III	AGCGCT	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	141, 209, 459
Eco91I	GGTNACC	1 cut(s)	721
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	721
EcoRII	CCWGG	2 cut(s)	508, 725
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	3 cut(s)	58, 1053, 1146
ErhI	CCWWGG	3 cut(s)	58, 1053, 1146
FaeI	CATG	5 cut(s)	29, 497, 617, 689, 1033
FalI	AAGNNNNNCTT	2 cut(s)	956, 988
FaqI	GGGAC	1 cut(s)	1153
FatI	CATG	5 cut(s)	25, 493, 613, 685, 1029
Fnu4HI	GCNGC	4 cut(s)	756, 851, 854, 857
FokI	GGATG	2 cut(s)	63, 277
Fsp4HI	GCNGC	4 cut(s)	756, 851, 854, 857
FspBI	CTAG	3 cut(s)	33, 332, 602
GlaI	GCGC	2 cut(s)	40, 759
GluI	GCNGC	4 cut(s)	756, 851, 854, 857
GsuI	CTGGAG	1 cut(s)	881
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	1042
HapII	CCGG	1 cut(s)	446
HgaI	GACGC	1 cut(s)	899
HhaI	GCGC	2 cut(s)	41, 760
Hin1II	CATG	5 cut(s)	29, 497, 617, 689, 1033
Hin6I	GCGC	2 cut(s)	39, 758
HinP1I	GCGC	2 cut(s)	39, 758
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	3 cut(s)	46, 570, 977
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	3 cut(s)	47, 733, 821
Hpy166II	GTNNAC	3 cut(s)	352, 835, 1003
Hpy188I	TCNGA	5 cut(s)	228, 700, 820, 910, 1159
Hpy188III	TCNNGA	2 cut(s)	214, 527
Hpy8I	GTNNAC	3 cut(s)	352, 835, 1003
HpyAV	CCTTC	3 cut(s)	947, 1067, 1127
HpyCH4III	ACNGT	2 cut(s)	281, 644
HpyCH4IV	ACGT	2 cut(s)	831, 999
HpyCH4V	TGCA	6 cut(s)	10, 95, 202, 302, 459, 1164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 856
HpyF3I	CTNAG	5 cut(s)	42, 346, 355, 697, 1092
HpySE526I	ACGT	2 cut(s)	831, 999
Hsp92II	CATG	5 cut(s)	29, 497, 617, 689, 1033
HspAI	GCGC	2 cut(s)	39, 758
Kzo9I	GATC	3 cut(s)	289, 504, 864
LmnI	GCTCC	2 cut(s)	672, 730
Lsp1109I	GCAGC	4 cut(s)	767, 837, 840, 843
LweI	GCATC	4 cut(s)	106, 255, 1086, 1162
MaeI	CTAG	3 cut(s)	33, 332, 602
MaeII	ACGT	2 cut(s)	831, 999
MaeIII	GTNAC	5 cut(s)	275, 281, 644, 721, 827
MalI	GATC	3 cut(s)	291, 506, 866
MboI	GATC	3 cut(s)	289, 504, 864
MflI	RGATCY	2 cut(s)	289, 504
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	4 cut(s)	168, 258, 679, 915
MlyI	GAGTC	2 cut(s)	55, 971
MmeI	TCCRAC	3 cut(s)	378, 927, 1124
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	3 cut(s)	447, 510, 727
Mva1269I	GAATGC	1 cut(s)	852
MvaI	CCWGG	2 cut(s)	510, 727
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	2 cut(s)	125, 856
NciI	CCSGG	1 cut(s)	447
NdeII	GATC	3 cut(s)	289, 504, 864
NlaIII	CATG	5 cut(s)	29, 497, 617, 689, 1033
NlaIV	GGNNCC	2 cut(s)	506, 1152
NmuCI	GTSAC	3 cut(s)	644, 721, 827
PctI	GAATGC	1 cut(s)	852
PfeI	GAWTC	1 cut(s)	570
PkrI	GCNGC	4 cut(s)	757, 852, 855, 858
PleI	GAGTC	2 cut(s)	54, 971
PpsI	GAGTC	2 cut(s)	54, 971
Psp6I	CCWGG	2 cut(s)	508, 725
PspEI	GGTNACC	1 cut(s)	721
PspGI	CCWGG	2 cut(s)	508, 725
PspN4I	GGNNCC	2 cut(s)	506, 1152
PspPI	GGNCC	2 cut(s)	4, 1151
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	2 cut(s)	289, 504
RsaI	GTAC	3 cut(s)	64, 492, 836
RsaNI	GTAC	3 cut(s)	63, 491, 835
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	4 cut(s)	756, 851, 854, 857
Sau3AI	GATC	3 cut(s)	289, 504, 864
Sau96I	GGNCC	2 cut(s)	4, 1151
SchI	GAGTC	2 cut(s)	55, 971
ScrFI	CCNGG	3 cut(s)	447, 510, 727
SduI	GDGCHC	1 cut(s)	669
SfaNI	GCATC	4 cut(s)	106, 255, 1086, 1162
SfcI	CTRYAG	1 cut(s)	8
SinI	GGWCC	2 cut(s)	4, 1151
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	4 cut(s)	168, 258, 679, 915
SsiI	CCGC	2 cut(s)	50, 873
SspI	AATATT	1 cut(s)	84
SspMI	CTAG	3 cut(s)	33, 332, 602
StyD4I	CCNGG	3 cut(s)	445, 508, 725
StyI	CCWWGG	3 cut(s)	58, 1053, 1146
TaaI	ACNGT	2 cut(s)	281, 644
TaiI	ACGT	2 cut(s)	834, 1002
TaqI	TCGA	4 cut(s)	379, 473, 975, 1109
TasI	AATT	4 cut(s)	168, 258, 679, 915
TatI	WGTACW	2 cut(s)	490, 834
TfiI	GAWTC	1 cut(s)	570
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	2 cut(s)	588, 647
TseFI	GTSAC	3 cut(s)	644, 721, 827
TseI	GCWGC	4 cut(s)	755, 850, 853, 856
Tsp45I	GTSAC	3 cut(s)	644, 721, 827
TspDTI	ATGAA	4 cut(s)	65, 555, 630, 927
TspGWI	ACGGA	2 cut(s)	127, 263
TspRI	CASTG	2 cut(s)	588, 647
VpaK11BI	GGWCC	2 cut(s)	4, 1151
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	915
XspI	CTAG	3 cut(s)	33, 332, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.