Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003014

Physical Location & Seq

Genomic Coordinates Reverse (-)

23018080 .. 23021717

Gene Structure 3638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g21210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGGGTCACAGAGATCTGCCTTCTCCAAATTCAAATGGATATTTTATAATCTTGATGCTGATGCACTTGATTATTTTAGCCCGAGCTTCGATCCATGACTACCAAGACGAGTCCTTCATCCGTCGTTCCAATTCCTTCTTCTTCCATGGCGGAAGTGAAGGCCTTTACGCTTCCAAGCTCGACTCTGGCAATGATAAGTCCAGCTCTGAGGATAAGCCCCTCAATGGCAAGTCATTCATCAGGTTCGAATCAATCATCTTTCGAAGAACCAAGGAATCTGCTGAAAAGAAGAATGAGATGCAGCAGAGGACTGGCTTAGTCGAGGCTATTGTTCTTGAGGTTAGGGACAGGGAGAAGATTGGGGGTTCTTATTTGAACTCCAATGCAATATGCTGCACCCCAGAGCTATCCAAGGACGGTTCCTGCAAGGTGGGAGAGGTTATCATCCAACAATACCCAGACAATCCTGATGGGCCAAAAAGGATTCAGACCTTCTTCGAGGGGAAAAATGAAGAGGCTAATATGGATATACAAACTATTGAAATCAATAGCACTGGAATGTACTATCTCTATTTTATGTTCTGTGATCCAGAACTTGTTGGCACATTAATCAGTGGAAGAACTGTTTGGAGGAACCCTGATGGTTATTTACCTGGAAAGATGTCCCCATTGATGACATTTTTTGGCCTAATGTCTTTAGCTTACCTAGTCCTCGGTCTTTTCTGGTTTCTCCGCTTTTTACAGTATTGGAAAGACATAATACAGTTGCACTACCACATCAGTGCTGTAATTGGACTTGGAATGTGTGAAATGGCCCTTTGGTATTTTGAATATGCAAATTTCAATTCCACTGGAAGCAGACCAATGGGAATTACCATATGGGCAGTAACCTTCAGCGCCGTTAAAAAAACTGTCTCCCGGCTTCTTCTTCTGGTGGTTTCAATGGGCTATGGTGTTGTGCGGCCAACTCTCGGTGGTATAACCTCGAAAGTACTTCTCCTTGGTGTGATATATTTTGTAGCATCAGAAGCACTTGAGCTTGTTGAGCATTTGGGGAATATCAACGACTTTTCTGGAAAAGCAAGGCTTTTTCTGGTGCTGCCTGTTGCTCTTTTGGATGCCTGTTTTATTCTTTGGATCTTTTCCTCGTTATCTAAAACTTTGGAGAAGCTTCAGATTCGAAGAAGCATGGCCAAACTTGAGCTGTACCGAAAGTTTACGAATTCTCTTGCAGTATCAGTGCTGCTCTCTGTTGCTTGGATTGGCTATGAGTTGTATTTCAATGCCACTGACCCGTTGAGTGAGCTGTGGCGAAGAGCCTGGGTCATCCCAGCTTTCTGGACTTTGCTTGCTTATTTGCTGTTGGTGGTGATATGTGTTCTTTGGGCTCCATCTCATAACCCAACCGGATATGCGTACTCGGAGGAGACTGTGGATGACTTTGATGACGAGGGTATCTCGCTCACGGGAAGTGGAGTCAAGGTGGCGGGCGGAGACTTGGCAACCAAGCTAGAAAGAAAGGAAAGGAAGGCGTCGAGTGCAGCAGAACATCATGTGTTTGGGCTTGGGGAAGATGTAGAGGAGGACAAGAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lung_7-TM_R

Protein Analysis

533

Amino Acids

60.01

Weight (kDa)

5.9

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003014)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61670 AT1G61670
fragaria_vesca	FvH4_6g09800 FvH4_6g09800 FvH4_6g09800 FvH4_6g09800 FvH4_7g26010 FvH4_7g26010
malus_domestica	MD01G1168400.v1.1 MD07G1234400.v1.1 MD12G1189000.v1.1
prunus_persica	Prupe.2G264800_v2.0.a1 Prupe.6G294600_v2.0.a1
pyrus_communis	pycom01g18130 pycom07g21210 pycom12g17640
rosa_chinensis	RchiOBHm_Chr1g0372411 RchiOBHm_Chr3g0460391
rosa_laevigata	RLG00000025015 RLG00000026901
rosa_multiflora	Rmu_sc0001755.1_g000004 Rmu_sc0004267.1_g000014
rosa_roxburghii	Rroxscaffold_6G00419530
rosa_rugosa	Rorug01G0371500 Rorug01G0371600 Rorug01G0371700 Rorug01G0371700 Rorug03G0042500
rosa_samantha	Rh1AG380200 Rh1BG343700 Rh1CG357200 Rh1DG374900 Rh3AG100400 Rh3BG104400 Rh3CG106100 Rh3DG105700
rosa_wichuraiana	Rw1G033420 Rw3G008530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AciI	CCGC	5 cut(s)	150, 733, 961, 1487, 1491
AclWI	GGATC	3 cut(s)	85, 581, 1145
AcoI	YGGCCR	2 cut(s)	962, 1191
AcsI	RAATTY	3 cut(s)	28, 838, 1222
AcuI	CTGAAG	2 cut(s)	877, 1157
AcyI	GRCGYC	1 cut(s)	1532
AfaI	GTAC	4 cut(s)	563, 993, 1208, 1418
AfiI	CCNNNNNNNGG	2 cut(s)	224, 971
AgsI	TTSAA	7 cut(s)	33, 376, 542, 830, 844, 942, 1282
AjnI	CCWGG	2 cut(s)	652, 1319
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 610, 642
AleI	CACNNNNGTG	1 cut(s)	780
Alw26I	GTCTC	3 cut(s)	919, 1421, 1488
AlwI	GGATC	3 cut(s)	85, 581, 1145
Ama87I	CYCGRG	1 cut(s)	81
AoxI	GGCC	6 cut(s)	160, 473, 685, 813, 962, 1191
ApeKI	GCWGC	5 cut(s)	301, 393, 1099, 1243, 1541
ApoI	RAATTY	3 cut(s)	28, 838, 1222
AseI	ATTAAT	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	899
AspS9I	GGNCC	2 cut(s)	473, 814
AsuC2I	CCSGG	1 cut(s)	919
AsuHPI	GGTGA	1 cut(s)	1381
AsuII	TTCGAA	3 cut(s)	246, 262, 1180
AvaI	CYCGRG	1 cut(s)	81
BaeI	ACNNNNGTAYC	2 cut(s)	1438, 1471
BalI	TGGCCA	1 cut(s)	1193
BanII	GRGCYC	1 cut(s)	1390
BbvI	GCAGC	5 cut(s)	313, 380, 1086, 1230, 1553
BccI	CCATC	3 cut(s)	464, 635, 1399
BceAI	ACGGC	1 cut(s)	884
BciT130I	CCWGG	2 cut(s)	654, 1321
BcnI	CCSGG	1 cut(s)	919
BcoDI	GTCTC	3 cut(s)	919, 1421, 1488
BfaI	CTAG	2 cut(s)	707, 1511
BfoI	RGCGCY	1 cut(s)	900
BglII	AGATCT	1 cut(s)	13
BisI	GCNGC	6 cut(s)	302, 394, 962, 1100, 1244, 1542
BlsI	GCNGC	6 cut(s)	303, 395, 963, 1101, 1245, 1543
BmcAI	AGTACT	1 cut(s)	993
Bme1390I	CCNGG	3 cut(s)	654, 919, 1321
BmeT110I	CYCGRG	1 cut(s)	81
BmgT120I	GGNCC	2 cut(s)	473, 814
BmiI	GGNNCC	3 cut(s)	421, 635, 1389
BmrFI	CCNGG	3 cut(s)	654, 919, 1321
BmsI	GCATC	5 cut(s)	45, 51, 288, 1031, 1108
BplI	GAGNNNNNCTC	2 cut(s)	1442, 1474
Bpu14I	TTCGAA	3 cut(s)	246, 262, 1180
BpuEI	CTTGAG	3 cut(s)	356, 1055, 1220
BpuMI	CCSGG	1 cut(s)	919
BsaHI	GRCGYC	1 cut(s)	1532
BsaJI	CCNNGG	6 cut(s)	145, 270, 411, 712, 1000, 1320
BsaWI	WCCGGW	1 cut(s)	1406
BsaXI	ACNNNNNCTCC	2 cut(s)	1467, 1497
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 971
Bse1I	ACTGG	3 cut(s)	316, 559, 856
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	654, 1321
BseDI	CCNNGG	6 cut(s)	145, 270, 411, 712, 1000, 1320
BseGI	GGATG	5 cut(s)	117, 444, 1123, 1326, 1441
BseLI	CCNNNNNNNGG	2 cut(s)	224, 971
BseMI	GCAATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	316, 559, 856
BseRI	GAGGAG	2 cut(s)	1439, 1595
BseXI	GCAGC	5 cut(s)	313, 380, 1086, 1230, 1553
BseYI	CCCAGC	1 cut(s)	1330
BsgI	GTGCAG	2 cut(s)	379, 1560
BshFI	GGCC	6 cut(s)	162, 475, 687, 815, 964, 1193
BsiHKCI	CYCGRG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	919, 1407
BslFI	GGGAC	2 cut(s)	359, 649
BslI	CCNNNNNNNGG	2 cut(s)	224, 971
BsmAI	GTCTC	3 cut(s)	919, 1421, 1488
BsmFI	GGGAC	2 cut(s)	359, 649
BsnI	GGCC	6 cut(s)	162, 475, 687, 815, 964, 1193
BsoBI	CYCGRG	1 cut(s)	81
Bsp119I	TTCGAA	3 cut(s)	246, 262, 1180
Bsp1286I	GDGCHC	1 cut(s)	1390
Bsp143I	GATC	4 cut(s)	13, 90, 586, 1137
Bsp19I	CCATGG	1 cut(s)	145
BspACI	CCGC	5 cut(s)	150, 733, 961, 1487, 1491
BspANI	GGCC	6 cut(s)	162, 475, 687, 815, 964, 1193
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	3 cut(s)	421, 635, 1389
BspPI	GGATC	3 cut(s)	85, 581, 1145
BspQI	GCTCTTC	1 cut(s)	1309
BspT104I	TTCGAA	3 cut(s)	246, 262, 1180
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	3 cut(s)	316, 559, 856
BssECI	CCNNGG	6 cut(s)	145, 270, 411, 712, 1000, 1320
BssMI	GATC	4 cut(s)	13, 90, 586, 1137
BssNI	GRCGYC	1 cut(s)	1532
BssT1I	CCWWGG	4 cut(s)	145, 270, 411, 1000
Bst2UI	CCWGG	2 cut(s)	654, 1321
Bst4CI	ACNGT	6 cut(s)	419, 625, 744, 765, 913, 1432
Bst6I	CTCTTC	2 cut(s)	507, 1309
BstACI	GRCGYC	1 cut(s)	1532
BstBI	TTCGAA	3 cut(s)	246, 262, 1180
BstC8I	GCNNGC	2 cut(s)	1350, 1489
BstDEI	CTNAG	2 cut(s)	207, 316
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	5 cut(s)	117, 444, 1123, 1326, 1441
BstH2I	RGCGCY	1 cut(s)	900
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	4 cut(s)	16, 93, 589, 1140
BstMAI	GTCTC	3 cut(s)	919, 1421, 1488
BstMBI	GATC	4 cut(s)	13, 90, 586, 1137
BstMWI	GCNNNNNNNGC	3 cut(s)	1028, 1045, 1538
BstNI	CCWGG	2 cut(s)	654, 1321
BstSCI	CCNGG	3 cut(s)	652, 917, 1319
BstV1I	GCAGC	5 cut(s)	313, 380, 1086, 1230, 1553
BstX2I	RGATCY	2 cut(s)	13, 1137
BstXI	CCANNNNNNTGG	1 cut(s)	1338
BstYI	RGATCY	2 cut(s)	13, 1137
BsuRI	GGCC	6 cut(s)	162, 475, 687, 815, 964, 1193
BtgI	CCRYGG	1 cut(s)	145
BtsCI	GGATG	5 cut(s)	117, 444, 1123, 1326, 1441
BtsIMutI	CAGTG	6 cut(s)	552, 619, 787, 849, 1245, 1287
Cac8I	GCNNGC	2 cut(s)	1350, 1489
CfoI	GCGC	1 cut(s)	899
Cfr13I	GGNCC	2 cut(s)	473, 814
CseI	GACGC	1 cut(s)	1521
Csp6I	GTAC	4 cut(s)	562, 992, 1207, 1417
CviAII	CATG	4 cut(s)	95, 146, 1189, 1553
CviQI	GTAC	4 cut(s)	562, 992, 1207, 1417
DdeI	CTNAG	2 cut(s)	207, 316
DpnI	GATC	4 cut(s)	15, 92, 588, 1139
DpnII	GATC	4 cut(s)	13, 90, 586, 1137
EaeI	YGGCCR	2 cut(s)	962, 1191
Eam1104I	CTCTTC	2 cut(s)	507, 1309
EarI	CTCTTC	2 cut(s)	507, 1309
EciI	GGCGGA	2 cut(s)	165, 1506
Eco130I	CCWWGG	4 cut(s)	145, 270, 411, 1000
Eco147I	AGGCCT	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	1390
Eco57I	CTGAAG	2 cut(s)	877, 1157
Eco88I	CYCGRG	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	1222
EcoRII	CCWGG	2 cut(s)	652, 1319
EcoT14I	CCWWGG	4 cut(s)	145, 270, 411, 1000
EcoT38I	GRGCYC	1 cut(s)	1390
ErhI	CCWWGG	4 cut(s)	145, 270, 411, 1000
FaeI	CATG	4 cut(s)	98, 149, 1192, 1556
FalI	AAGNNNNNCTT	2 cut(s)	1071, 1103
FaqI	GGGAC	2 cut(s)	359, 649
FatI	CATG	4 cut(s)	94, 145, 1188, 1552
FauI	CCCGC	1 cut(s)	1480
FauNDI	CATATG	1 cut(s)	878
Fnu4HI	GCNGC	6 cut(s)	302, 394, 962, 1100, 1244, 1542
FokI	GGATG	5 cut(s)	104, 431, 1130, 1313, 1448
FriOI	GRGCYC	1 cut(s)	1390
Fsp4HI	GCNGC	6 cut(s)	302, 394, 962, 1100, 1244, 1542
FspBI	CTAG	2 cut(s)	707, 1511
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	6 cut(s)	302, 394, 962, 1100, 1244, 1542
GsaI	CCCAGC	1 cut(s)	1334
HaeII	RGCGCY	1 cut(s)	900
HaeIII	GGCC	6 cut(s)	162, 475, 687, 815, 964, 1193
HapII	CCGG	2 cut(s)	919, 1407
HgaI	GACGC	1 cut(s)	1521
HhaI	GCGC	1 cut(s)	899
Hin1I	GRCGYC	1 cut(s)	1532
Hin1II	CATG	4 cut(s)	98, 149, 1192, 1556
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HindIII	AAGCTT	1 cut(s)	1169
HinfI	GANTC	7 cut(s)	110, 182, 248, 275, 484, 1177, 1476
HpaII	CCGG	2 cut(s)	919, 1407
HphI	GGTGA	1 cut(s)	1381
Hpy166II	GTNNAC	1 cut(s)	1218
Hpy188I	TCNGA	5 cut(s)	208, 489, 1027, 1176, 1423
Hpy188III	TCNNGA	6 cut(s)	52, 335, 467, 590, 1074, 1339
Hpy8I	GTNNAC	1 cut(s)	1218
Hpy99I	CGWCG	2 cut(s)	126, 1537
HpyAV	CCTTC	7 cut(s)	30, 124, 145, 152, 502, 901, 1522
HpyCH4III	ACNGT	6 cut(s)	419, 625, 744, 765, 913, 1432
HpyCH4V	TGCA	9 cut(s)	64, 301, 386, 396, 426, 769, 836, 1232, 1541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1028, 1045, 1538
HpyF3I	CTNAG	2 cut(s)	207, 316
Hsp92I	GRCGYC	1 cut(s)	1532
Hsp92II	CATG	4 cut(s)	98, 149, 1192, 1556
HspAI	GCGC	1 cut(s)	897
Kzo9I	GATC	4 cut(s)	13, 90, 586, 1137
LguI	GCTCTTC	1 cut(s)	1309
LmnI	GCTCC	1 cut(s)	1393
Lsp1109I	GCAGC	5 cut(s)	313, 380, 1086, 1230, 1553
LweI	GCATC	5 cut(s)	45, 51, 288, 1031, 1108
MaeI	CTAG	2 cut(s)	707, 1511
MaeIII	GTNAC	2 cut(s)	5, 886
MalI	GATC	4 cut(s)	15, 92, 588, 1139
MboI	GATC	4 cut(s)	13, 90, 586, 1137
MflI	RGATCY	2 cut(s)	13, 1137
MhlI	GDGCHC	1 cut(s)	1390
MlsI	TGGCCA	1 cut(s)	1193
MluCI	AATT	7 cut(s)	28, 130, 789, 838, 844, 870, 1222
MluNI	TGGCCA	1 cut(s)	1193
MlyI	GAGTC	3 cut(s)	119, 176, 1485
MmeI	TCCRAC	1 cut(s)	472
Mox20I	TGGCCA	1 cut(s)	1193
MscI	TGGCCA	1 cut(s)	1193
MseI	TTAA	2 cut(s)	608, 903
MslI	CAYNNNNRTG	2 cut(s)	557, 780
Msp20I	TGGCCA	1 cut(s)	1193
MspI	CCGG	2 cut(s)	919, 1407
MspR9I	CCNGG	3 cut(s)	654, 919, 1321
MvaI	CCWGG	2 cut(s)	654, 1321
MwoI	GCNNNNNNNGC	3 cut(s)	1028, 1045, 1538
NciI	CCSGG	1 cut(s)	919
NcoI	CCATGG	1 cut(s)	145
NdeI	CATATG	1 cut(s)	878
NdeII	GATC	4 cut(s)	13, 90, 586, 1137
NlaIII	CATG	4 cut(s)	98, 149, 1192, 1556
NlaIV	GGNNCC	3 cut(s)	421, 635, 1389
NmuCI	GTSAC	1 cut(s)	5
NspV	TTCGAA	3 cut(s)	246, 262, 1180
OliI	CACNNNNGTG	1 cut(s)	780
PceI	AGGCCT	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	1309
PfeI	GAWTC	4 cut(s)	248, 275, 484, 1177
PkrI	GCNGC	6 cut(s)	303, 395, 963, 1101, 1245, 1543
PleI	GAGTC	3 cut(s)	118, 176, 1484
PpsI	GAGTC	3 cut(s)	118, 176, 1484
PshBI	ATTAAT	1 cut(s)	608
PsiI	TTATAA	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	652, 1319
PspFI	CCCAGC	1 cut(s)	1330
PspGI	CCWGG	2 cut(s)	652, 1319
PspN4I	GGNNCC	3 cut(s)	421, 635, 1389
PspPI	GGNCC	2 cut(s)	473, 814
PsuI	RGATCY	2 cut(s)	13, 1137
RsaI	GTAC	4 cut(s)	563, 993, 1208, 1418
RsaNI	GTAC	4 cut(s)	562, 992, 1207, 1417
RseI	CAYNNNNRTG	2 cut(s)	557, 780
SapI	GCTCTTC	1 cut(s)	1309
SaqAI	TTAA	2 cut(s)	608, 903
SatI	GCNGC	6 cut(s)	302, 394, 962, 1100, 1244, 1542
Sau3AI	GATC	4 cut(s)	13, 90, 586, 1137
Sau96I	GGNCC	2 cut(s)	473, 814
ScaI	AGTACT	1 cut(s)	993
SchI	GAGTC	3 cut(s)	119, 176, 1485
ScrFI	CCNGG	3 cut(s)	654, 919, 1321
SduI	GDGCHC	1 cut(s)	1390
SfaNI	GCATC	5 cut(s)	45, 51, 288, 1031, 1108
SfuI	TTCGAA	3 cut(s)	246, 262, 1180
SmiMI	CAYNNNNRTG	2 cut(s)	557, 780
SmlI	CTYRAG	3 cut(s)	335, 1034, 1199
SmoI	CTYRAG	3 cut(s)	335, 1034, 1199
Sse9I	AATT	7 cut(s)	28, 130, 789, 838, 844, 870, 1222
SseBI	AGGCCT	1 cut(s)	162
SsiI	CCGC	5 cut(s)	150, 733, 961, 1487, 1491
SspMI	CTAG	2 cut(s)	707, 1511
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	652, 917, 1319
StyI	CCWWGG	4 cut(s)	145, 270, 411, 1000
TaaI	ACNGT	6 cut(s)	419, 625, 744, 765, 913, 1432
TaqI	TCGA	9 cut(s)	89, 180, 246, 262, 321, 498, 986, 1180, 1535
TaqII	GACCGA	1 cut(s)	704
TasI	AATT	7 cut(s)	28, 130, 789, 838, 844, 870, 1222
TatI	WGTACW	2 cut(s)	561, 991
TauI	GCSGC	1 cut(s)	964
TfiI	GAWTC	4 cut(s)	248, 275, 484, 1177
Tru1I	TTAA	2 cut(s)	608, 903
Tru9I	TTAA	2 cut(s)	608, 903
TscAI	CASTG	6 cut(s)	559, 619, 787, 856, 1245, 1294
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	5 cut(s)	301, 393, 1099, 1243, 1541
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	3 cut(s)	106, 226, 525
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	6 cut(s)	559, 619, 787, 856, 1245, 1294
VspI	ATTAAT	1 cut(s)	608
XapI	RAATTY	3 cut(s)	28, 838, 1222
XspI	CTAG	2 cut(s)	707, 1511
ZrmI	AGTACT	1 cut(s)	993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.