Rh3CG106100

Transmembrane protein 87B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003014
Physical Location & Seq
Forward (+)
8364542 .. 8367787
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG106100.1

Sequence Viewer

Length: 1125 bp
ATGCAGCAGAGTACTGGTTTGGTGGAAGCTATAATTCTTGAGGTGAAGGACAGGGCTAGGATTGGGGCTTCCTTCCTGAAATTGGATCTGATATGCTGCACCAAGAATCTTTCCGAGGATGGACAATGCAGAGCGGGGGAGGTTGTTATCCACAAAAATCCAGACAATCCCGAGTGGCCTAGGCGCATCCAAACAGTCTTTAATGGAAAGAACGAAGAGGCTAAAATGGACTCTGAGACGGTTGAGATAAAAAGTTCTGGAATGTACTACCTGTATTTTATATTTTGTAATCCGGAGCTCAAGGGCACGCTGATTAAAGGAAGGACTGATTGGAGAAATCCATATGGTTATTTGCCGGGGAAGATGGCTCCTCTGATGACATTCTATGGCTTAATGTCTTTAGCTTACCTTGTGCTTGGCCTTGCCTGGTTTCTGAGGTTTGTTCAGTTTTGGAAGGATATCATACAATTGCACTACCACATCACAGCGGTGATTGCTCTTGGAATGTGTGAAATGGCTGTCTGGTACTTTGAGTACGTCAATTTCAATTCGACTGGAACCAGACCTATGGGCATTACACTGTGGGCAGTAACCTTTAGATCTGTCAAGAAGACACTCTCTCGTCTTCTTCTGTTAGTAGTTTCAATGGGCTTTGGTGTGGTGAAGCCTACACTTGGTGGTATAACCCCAAAAGTACTTCTGCTTGGCGTGGTATATTTTATGGCATCAGAAGCACTCGAGCTTATTGAAAATTTGGGGAATATCAATGATTTTTCTGGAAAAGCAAAGTTATTTTTGGTCTTACCAGTTGCCTTCTTAGATTCGTGCTTTATTCTGTGGATTTTCTCTTCGTTATCAAAAACTTTGGAGAAACTTCAGATCAGGAGAAACATGGCTAAGTTGGAGCTATATCGAAAATTTACCAACTCTCTCGCAGTCTCTGTGCTTCTATCAGTGGCCTGGATTGGCTTTGAGCTATATTTCAATGCAACCGATCCATTGAGTGAGTTTTGGCAAATCGCCTGGGTTATTCCTGCATTTTGGACTCTGCTTGCCTACGCTCTCTTGGCAGTGATATGTATACTCTGGGCTCCATCAAGTAACCCAACTAGGTATTTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

374

Amino Acids

42.57

Weight (kDa)

8.93

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 124 - 369 7.2e-94 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 134
AccI GTMKAC 1 cut(s) 1081
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 2 cut(s) 134, 488
AclWI GGATC 2 cut(s) 93, 989
AcsI RAATTY 2 cut(s) 751, 917
AcuI CTGAAG 1 cut(s) 860
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 5 cut(s) 13, 266, 527, 536, 696
AfiI CCNNNNNNNGG 2 cut(s) 82, 674
AgsI TTSAA 4 cut(s) 547, 645, 749, 985
AjnI CCWGG 3 cut(s) 425, 959, 1022
AjuI GAANNNNNNNTTGG 2 cut(s) 313, 345
AleI CACNNNNGTG 1 cut(s) 488
AluBI AGCT 6 cut(s) 29, 298, 404, 742, 907, 976
AluI AGCT 6 cut(s) 29, 298, 404, 742, 907, 976
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 230, 943
AlwI GGATC 2 cut(s) 93, 989
AlwNI CAGNNNCTG 1 cut(s) 941
Ama87I CYCGRG 2 cut(s) 170, 737
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 3 cut(s) 176, 418, 957
ApeKI GCWGC 2 cut(s) 4, 96
ApoI RAATTY 2 cut(s) 751, 917
AspA2I CCTAGG 1 cut(s) 179
AspLEI GCGC 1 cut(s) 186
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 3 cut(s) 55, 502, 673
AvaI CYCGRG 2 cut(s) 170, 737
AvrII CCTAGG 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 308
BanII GRGCYC 2 cut(s) 300, 1093
BbsI GAAGAC 2 cut(s) 617, 617
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 2 cut(s) 16, 83
BccI CCATC 3 cut(s) 113, 358, 1102
BciT130I CCWGG 3 cut(s) 427, 961, 1024
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 230, 943
BfaI CTAG 3 cut(s) 57, 180, 1110
BglII AGATCT 1 cut(s) 599
BisI GCNGC 2 cut(s) 5, 97
BlnI CCTAGG 1 cut(s) 179
BlsI GCNGC 2 cut(s) 6, 98
BmcAI AGTACT 2 cut(s) 13, 696
Bme1390I CCNGG 4 cut(s) 357, 427, 961, 1024
BmeT110I CYCGRG 2 cut(s) 170, 737
BmiI GGNNCC 3 cut(s) 369, 559, 1092
BmrFI CCNGG 4 cut(s) 357, 427, 961, 1024
BmsI GCATC 2 cut(s) 195, 734
BpiI GAAGAC 2 cut(s) 617, 617
BpuEI CTTGAG 2 cut(s) 59, 284
BpuMI CCSGG 1 cut(s) 357
BsaJI CCNNGG 4 cut(s) 114, 179, 356, 1023
BsaWI WCCGGW 1 cut(s) 292
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 674
Bse1I ACTGG 3 cut(s) 19, 559, 806
BseAI TCCGGA 1 cut(s) 292
BseBI CCWGG 3 cut(s) 427, 961, 1024
BseDI CCNNGG 4 cut(s) 114, 179, 356, 1023
BseGI GGATG 2 cut(s) 124, 186
BseLI CCNNNNNNNGG 2 cut(s) 82, 674
BseMII CTCAG 2 cut(s) 225, 425
BseNI ACTGG 3 cut(s) 19, 559, 806
BseRI GAGGAG 1 cut(s) 360
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 2 cut(s) 16, 83
BsgI GTGCAG 1 cut(s) 82
BshFI GGCC 3 cut(s) 178, 420, 959
BsiHKAI GWGCWC 1 cut(s) 300
BsiHKCI CYCGRG 2 cut(s) 170, 737
BsiSI CCGG 2 cut(s) 293, 356
BslI CCNNNNNNNGG 2 cut(s) 82, 674
BsmAI GTCTC 2 cut(s) 230, 943
BsmBI CGTCTC 1 cut(s) 230
BsnI GGCC 3 cut(s) 178, 420, 959
BsoBI CYCGRG 2 cut(s) 170, 737
Bsp1286I GDGCHC 3 cut(s) 300, 308, 1093
Bsp13I TCCGGA 1 cut(s) 292
Bsp143I GATC 4 cut(s) 85, 599, 879, 994
BspACI CCGC 2 cut(s) 134, 488
BspANI GGCC 3 cut(s) 178, 420, 959
BspCNI CTCAG 2 cut(s) 226, 426
BspEI TCCGGA 1 cut(s) 292
BspLI GGNNCC 3 cut(s) 369, 559, 1092
BspPI GGATC 2 cut(s) 93, 989
BsrBI CCGCTC 1 cut(s) 134
BsrI ACTGG 3 cut(s) 19, 559, 806
BssECI CCNNGG 4 cut(s) 114, 179, 356, 1023
BssMI GATC 4 cut(s) 85, 599, 879, 994
BssNAI GTATAC 1 cut(s) 1082
BssT1I CCWWGG 1 cut(s) 179
Bst1107I GTATAC 1 cut(s) 1082
Bst2UI CCWGG 3 cut(s) 427, 961, 1024
Bst4CI ACNGT 3 cut(s) 196, 241, 582
Bst6I CTCTTC 2 cut(s) 210, 853
BstC8I GCNNGC 2 cut(s) 308, 1053
BstDEI CTNAG 4 cut(s) 234, 434, 817, 897
BstF5I GGATG 2 cut(s) 124, 186
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 4 cut(s) 88, 602, 882, 997
BstMAI GTCTC 2 cut(s) 230, 943
BstMBI GATC 4 cut(s) 85, 599, 879, 994
BstMWI GCNNNNNNNGC 3 cut(s) 494, 731, 1067
BstNI CCWGG 3 cut(s) 427, 961, 1024
BstSCI CCNGG 4 cut(s) 355, 425, 959, 1022
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 16, 83
BstV2I GAAGAC 2 cut(s) 617, 617
BstX2I RGATCY 2 cut(s) 85, 599
BstXI CCANNNNNNTGG 1 cut(s) 568
BstYI RGATCY 2 cut(s) 85, 599
BstZ17I GTATAC 1 cut(s) 1082
BsuRI GGCC 3 cut(s) 178, 420, 959
BtsCI GGATG 2 cut(s) 124, 186
BtsI GCAGTG 1 cut(s) 1077
BtsIMutI CAGTG 3 cut(s) 578, 960, 1077
Cac8I GCNNGC 2 cut(s) 308, 1053
CaiI CAGNNNCTG 1 cut(s) 941
CfoI GCGC 1 cut(s) 186
Csp6I GTAC 5 cut(s) 12, 265, 526, 535, 695
CviAII CATG 1 cut(s) 892
CviQI GTAC 5 cut(s) 12, 265, 526, 535, 695
DdeI CTNAG 4 cut(s) 234, 434, 817, 897
DpnI GATC 4 cut(s) 87, 601, 881, 996
DpnII GATC 4 cut(s) 85, 599, 879, 994
DraIII CACNNNGTG 1 cut(s) 677
Eam1104I CTCTTC 2 cut(s) 210, 853
EarI CTCTTC 2 cut(s) 210, 853
Ecl136II GAGCTC 1 cut(s) 298
Eco130I CCWWGG 1 cut(s) 179
Eco24I GRGCYC 2 cut(s) 300, 1093
Eco32I GATATC 1 cut(s) 460
Eco53kI GAGCTC 1 cut(s) 298
Eco57I CTGAAG 1 cut(s) 860
Eco88I CYCGRG 2 cut(s) 170, 737
EcoICRI GAGCTC 1 cut(s) 298
EcoRII CCWGG 3 cut(s) 425, 959, 1022
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 2 cut(s) 300, 1093
ErhI CCWWGG 1 cut(s) 179
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 1 cut(s) 895
FatI CATG 1 cut(s) 891
FauI CCCGC 1 cut(s) 127
FauNDI CATATG 1 cut(s) 343
FblI GTMKAC 1 cut(s) 1081
Fnu4HI GCNGC 2 cut(s) 5, 97
FokI GGATG 2 cut(s) 131, 173
FriOI GRGCYC 2 cut(s) 300, 1093
Fsp4HI GCNGC 2 cut(s) 5, 97
FspBI CTAG 3 cut(s) 57, 180, 1110
GlaI GCGC 1 cut(s) 185
GluI GCNGC 2 cut(s) 5, 97
HaeIII GGCC 3 cut(s) 178, 420, 959
HapII CCGG 2 cut(s) 293, 356
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 895
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 4 cut(s) 106, 230, 821, 1045
HpaII CCGG 2 cut(s) 293, 356
HphI GGTGA 3 cut(s) 55, 502, 673
Hpy166II GTNNAC 1 cut(s) 1082
Hpy188I TCNGA 7 cut(s) 90, 115, 235, 375, 435, 730, 879
Hpy188III TCNNGA 9 cut(s) 38, 76, 161, 170, 258, 293, 607, 777, 883
Hpy8I GTNNAC 1 cut(s) 1082
HpyAV CCTTC 5 cut(s) 40, 82, 315, 448, 823
HpyCH4III ACNGT 3 cut(s) 196, 241, 582
HpyCH4IV ACGT 1 cut(s) 537
HpyCH4V TGCA 6 cut(s) 4, 99, 129, 472, 989, 1037
HpyF10VI GCNNNNNNNGC 3 cut(s) 494, 731, 1067
HpyF3I CTNAG 4 cut(s) 234, 434, 817, 897
HpySE526I ACGT 1 cut(s) 537
Hsp92II CATG 1 cut(s) 895
HspAI GCGC 1 cut(s) 184
Kpn2I TCCGGA 1 cut(s) 292
Kzo9I GATC 4 cut(s) 85, 599, 879, 994
LmnI GCTCC 4 cut(s) 295, 373, 904, 1096
Lsp1109I GCAGC 2 cut(s) 16, 83
LweI GCATC 2 cut(s) 195, 734
MaeI CTAG 3 cut(s) 57, 180, 1110
MaeII ACGT 1 cut(s) 537
MaeIII GTNAC 2 cut(s) 589, 1100
MalI GATC 4 cut(s) 87, 601, 881, 996
MbiI CCGCTC 1 cut(s) 134
MboI GATC 4 cut(s) 85, 599, 879, 994
MboII GAAGA 6 cut(s) 227, 373, 617, 620, 622, 840
MfeI CAATTG 1 cut(s) 467
MflI RGATCY 2 cut(s) 85, 599
MhlI GDGCHC 3 cut(s) 300, 308, 1093
MluCI AATT 7 cut(s) 33, 80, 467, 541, 547, 751, 917
MlyI GAGTC 2 cut(s) 224, 1039
MmeI TCCRAC 1 cut(s) 882
MnlI CCTC 6 cut(s) 34, 109, 133, 211, 381, 429
MroI TCCGGA 1 cut(s) 292
MseI TTAA 3 cut(s) 201, 315, 392
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 2 cut(s) 293, 356
MspR9I CCNGG 4 cut(s) 357, 427, 961, 1024
MunI CAATTG 1 cut(s) 467
MvaI CCWGG 3 cut(s) 427, 961, 1024
MwoI GCNNNNNNNGC 3 cut(s) 494, 731, 1067
NciI CCSGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 343
NdeII GATC 4 cut(s) 85, 599, 879, 994
NlaIII CATG 1 cut(s) 895
NlaIV GGNNCC 3 cut(s) 369, 559, 1092
OliI CACNNNNGTG 1 cut(s) 488
PaeR7I CTCGAG 1 cut(s) 737
PfeI GAWTC 2 cut(s) 106, 821
PkrI GCNGC 2 cut(s) 6, 98
PleI GAGTC 2 cut(s) 224, 1039
PpsI GAGTC 2 cut(s) 224, 1039
Psp124BI GAGCTC 1 cut(s) 300
Psp6I CCWGG 3 cut(s) 425, 959, 1022
PspGI CCWGG 3 cut(s) 425, 959, 1022
PspN4I GGNNCC 3 cut(s) 369, 559, 1092
PspXI VCTCGAGB 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 2 cut(s) 85, 599
RsaI GTAC 5 cut(s) 13, 266, 527, 536, 696
RsaNI GTAC 5 cut(s) 12, 265, 526, 535, 695
RseI CAYNNNNRTG 1 cut(s) 488
SacI GAGCTC 1 cut(s) 300
SaqAI TTAA 3 cut(s) 201, 315, 392
SatI GCNGC 2 cut(s) 5, 97
Sau3AI GATC 4 cut(s) 85, 599, 879, 994
ScaI AGTACT 2 cut(s) 13, 696
SchI GAGTC 2 cut(s) 224, 1039
ScrFI CCNGG 4 cut(s) 357, 427, 961, 1024
SduI GDGCHC 3 cut(s) 300, 308, 1093
SfaNI GCATC 2 cut(s) 195, 734
Sfr274I CTCGAG 1 cut(s) 737
SlaI CTCGAG 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 488
SmlI CTYRAG 3 cut(s) 38, 299, 737
SmoI CTYRAG 3 cut(s) 38, 299, 737
Sse9I AATT 7 cut(s) 33, 80, 467, 541, 547, 751, 917
SsiI CCGC 2 cut(s) 134, 488
SspMI CTAG 3 cut(s) 57, 180, 1110
SstI GAGCTC 1 cut(s) 300
StyD4I CCNGG 4 cut(s) 355, 425, 959, 1022
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 3 cut(s) 196, 241, 582
TaiI ACGT 1 cut(s) 540
TaqI TCGA 3 cut(s) 551, 738, 913
TasI AATT 7 cut(s) 33, 80, 467, 541, 547, 751, 917
TatI WGTACW 3 cut(s) 11, 264, 694
TfiI GAWTC 2 cut(s) 106, 821
Tru1I TTAA 3 cut(s) 201, 315, 392
Tru9I TTAA 3 cut(s) 201, 315, 392
TscAI CASTG 3 cut(s) 585, 960, 1077
TseI GCWGC 2 cut(s) 4, 96
TspRI CASTG 3 cut(s) 585, 960, 1077
XapI RAATTY 2 cut(s) 751, 917
XhoI CTCGAG 1 cut(s) 737
XmaJI CCTAGG 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 1081
XspI CTAG 3 cut(s) 57, 180, 1110
ZrmI AGTACT 2 cut(s) 13, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.