RchiOBHm_Chr1g0372411

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003014
Physical Location & Seq
Reverse (-)
61109269 .. 61111403
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59640

Sequence Viewer

Length: 1215 bp
ATGGGTCACAGAGAGAGCACCAAGTATGATCTTCATTCAAATGGGTTTATAATCATTTTGATGCTAGTGTACTTAAACACCTTGGTGGATGCTTCGATCCATGAATACCAAGATGACACCTTTATACGTCGTTCCAATTCATTCTTCTTCCATGGCGGAAGTGAGGGTCTCTATGCTTCCAAAATTCACTCTGGTAATGACAAACTCGCTTCTGAAGACAAGACCATTGATGGCAAGTCCTTTATCAGGTTTGAATCTATCACCTTTCGAAGGACCAAGGAGTCTGCTGAAAAGAAGAATGAGATGCAGCAGAGAACTGGCTTGGTTGAGGCTATAGTACTTGAGGTTAGAGACAGGGAGAAGATTGGGGGTTCTTATTTGAACTCTGAGGCAATATGCTGTACCCCGGAGCTCTCCAAGGATGGTTCGTGCAAGGTGGGAGAGGTTATCATCCAGCAAAAACCCGACAACCCTGATGGGCCAAAAAGGATGCAGACCTTCTTTGAGGGGAAAAATGAAGAGACCAACATGGAACTTCAGACTATTCAGATCAACAGAACTGGAATGTACTATCTTTATTTCATGTTTTGTGATCCAGAACTTGTTGGCACATCAATTAGTGGAAGAACTGTTTGGAGGAACCCGGATGGTTATTTACCTGGAAAGATGTCGCCGCTGATGACATTTTTCGGCCTCATGTCTTTAGCTTACCTTGTCCTTGGTCTTTTCTGGTTTCTCCGCTTTGTGCAGTATTGGAAAGATATAATACAGTTGCACTACCACATCAGTGCTGTTATTGGTCTTGGAATGTGTGAGATGGCTCTATGGTATTTTGAATATGCAAATTTCAATTCAACCGGAACCAGACCAATGGGAATTACCATGTGGGCAGTAACCTTCAGTGCAGTCAAAAAAACTGTTTCCCGGCTTCTTCTTCTGGTGGTTTCAATGGGGTATGGTGTTGTGCGGCCAACCCTTGGTGGCATTACCACGAAAGTAGTACTCCTTGGTGTGATATACTTTGTAGCATCAGAAGCACTTGAGCTTGTTGAACATTTGGGAAATATCAATGACTTTTCTGGAAAAACAAGGCTCTTTCTGGTGCTACCGGTTGCTCTATTGGATGCCTGTTTTATTCTTTGGATCTTTTCATCACTATCTAAAACTTTGGAGAAGCTTCAGATGTCTGTTTTGCCTATATCATGGATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

404

Amino Acids

45.89

Weight (kDa)

6.48

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 225 - 395 1.3e-62 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AasI GACNNNNNNGTC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 977
AciI CCGC 4 cut(s) 156, 674, 739, 967
AclWI GGATC 3 cut(s) 91, 587, 1151
AcoI YGGCCR 1 cut(s) 968
AcsI RAATTY 2 cut(s) 183, 844
AcuI CTGAAG 4 cut(s) 234, 521, 883, 1163
AfaI GTAC 5 cut(s) 71, 339, 403, 569, 1002
AfiI CCNNNNNNNGG 3 cut(s) 246, 270, 977
AgeI ACCGGT 1 cut(s) 1108
AgsI TTSAA 8 cut(s) 39, 254, 382, 836, 850, 855, 948, 1052
AjnI CCWGG 1 cut(s) 658
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 616, 648
AleI CACNNNNGTG 2 cut(s) 83, 786
AluBI AGCT 4 cut(s) 412, 707, 1045, 1177
AluI AGCT 4 cut(s) 412, 707, 1045, 1177
Alw21I GWGCWC 2 cut(s) 20, 414
Alw26I GTCTC 3 cut(s) 173, 345, 515
AlwI GGATC 3 cut(s) 91, 587, 1151
AoxI GGCC 3 cut(s) 479, 691, 968
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 2 cut(s) 183, 844
AsiGI ACCGGT 1 cut(s) 1108
AspS9I GGNCC 2 cut(s) 273, 479
AsuC2I CCSGG 3 cut(s) 407, 644, 925
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 20, 414
BbvI GCAGC 1 cut(s) 319
BccI CCATC 6 cut(s) 224, 416, 470, 641, 811, 1201
BciT130I CCWGG 1 cut(s) 660
BcnI CCSGG 3 cut(s) 407, 644, 925
BcoDI GTCTC 3 cut(s) 173, 345, 515
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 3 cut(s) 308, 674, 968
BlsI GCNGC 3 cut(s) 309, 675, 969
BmcAI AGTACT 2 cut(s) 339, 1002
Bme1390I CCNGG 4 cut(s) 407, 644, 660, 925
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 273, 479
BmiI GGNNCC 2 cut(s) 641, 862
BmrFI CCNGG 4 cut(s) 407, 644, 660, 925
BmsI GCATC 6 cut(s) 51, 79, 294, 480, 1037, 1114
BpiI GAAGAC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 362, 1061
BpuMI CCSGG 3 cut(s) 407, 644, 925
BsaI GGTCTC 2 cut(s) 173, 515
BsaJI CCNNGG 8 cut(s) 81, 151, 276, 405, 417, 718, 976, 1006
BsaWI WCCGGW 2 cut(s) 857, 1108
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 270, 977
Bse118I RCCGGY 1 cut(s) 1108
Bse1I ACTGG 2 cut(s) 322, 565
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 8 cut(s) 81, 151, 276, 405, 417, 718, 976, 1006
BseGI GGATG 7 cut(s) 94, 427, 450, 495, 652, 1129, 1212
BseLI CCNNNNNNNGG 3 cut(s) 246, 270, 977
BseMII CTCAG 1 cut(s) 378
BseNI ACTGG 2 cut(s) 322, 565
BseXI GCAGC 1 cut(s) 319
BsgI GTGCAG 2 cut(s) 767, 924
BshFI GGCC 3 cut(s) 481, 693, 970
BshTI ACCGGT 1 cut(s) 1108
BsiHKAI GWGCWC 2 cut(s) 20, 414
BsiSI CCGG 5 cut(s) 407, 644, 858, 925, 1109
BslI CCNNNNNNNGG 3 cut(s) 246, 270, 977
BsmAI GTCTC 3 cut(s) 173, 345, 515
BsnI GGCC 3 cut(s) 481, 693, 970
Bso31I GGTCTC 2 cut(s) 173, 515
Bsp119I TTCGAA 1 cut(s) 268
Bsp1286I GDGCHC 2 cut(s) 20, 414
Bsp143I GATC 5 cut(s) 28, 96, 549, 592, 1143
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 4 cut(s) 156, 674, 739, 967
BspANI GGCC 3 cut(s) 481, 693, 970
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 641, 862
BspPI GGATC 3 cut(s) 91, 587, 1151
BspT104I TTCGAA 1 cut(s) 268
BspTNI GGTCTC 2 cut(s) 173, 515
BsrFI RCCGGY 1 cut(s) 1108
BsrI ACTGG 2 cut(s) 322, 565
BssAI RCCGGY 1 cut(s) 1108
BssECI CCNNGG 8 cut(s) 81, 151, 276, 405, 417, 718, 976, 1006
BssMI GATC 5 cut(s) 28, 96, 549, 592, 1143
BssT1I CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 3 cut(s) 631, 771, 919
Bst6I CTCTTC 1 cut(s) 513
BstBI TTCGAA 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 151
BstENI CCTNNNNNAGG 2 cut(s) 244, 268
BstF5I GGATG 7 cut(s) 94, 427, 450, 495, 652, 1129, 1212
BstKTI GATC 5 cut(s) 31, 99, 552, 595, 1146
BstMAI GTCTC 3 cut(s) 173, 345, 515
BstMBI GATC 5 cut(s) 28, 96, 549, 592, 1143
BstMWI GCNNNNNNNGC 1 cut(s) 1034
BstNI CCWGG 1 cut(s) 660
BstSCI CCNGG 4 cut(s) 405, 642, 658, 923
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 1143
BstXI CCANNNNNNTGG 1 cut(s) 871
BstYI RGATCY 1 cut(s) 1143
BsuRI GGCC 3 cut(s) 481, 693, 970
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 7 cut(s) 94, 427, 450, 495, 652, 1129, 1212
BtsIMutI CAGTG 2 cut(s) 793, 907
Cfr10I RCCGGY 1 cut(s) 1108
Cfr13I GGNCC 2 cut(s) 273, 479
Csp6I GTAC 5 cut(s) 70, 338, 402, 568, 1001
CspAI ACCGGT 1 cut(s) 1108
CviAII CATG 7 cut(s) 101, 152, 529, 583, 697, 883, 1203
CviQI GTAC 5 cut(s) 70, 338, 402, 568, 1001
DdeI CTNAG 1 cut(s) 387
DpnI GATC 5 cut(s) 30, 98, 551, 594, 1145
DpnII GATC 5 cut(s) 28, 96, 549, 592, 1143
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 968
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
EciI GGCGGA 1 cut(s) 171
Ecl136II GAGCTC 1 cut(s) 412
Eco130I CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
Eco24I GRGCYC 1 cut(s) 414
Eco31I GGTCTC 2 cut(s) 173, 515
Eco47I GGWCC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 412
Eco57I CTGAAG 4 cut(s) 234, 521, 883, 1163
EcoICRI GAGCTC 1 cut(s) 412
EcoNI CCTNNNNNAGG 2 cut(s) 244, 268
EcoRII CCWGG 1 cut(s) 658
EcoT14I CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
EcoT38I GRGCYC 1 cut(s) 414
ErhI CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
FaeI CATG 7 cut(s) 104, 155, 532, 586, 700, 886, 1206
FatI CATG 7 cut(s) 100, 151, 528, 582, 696, 882, 1202
Fnu4HI GCNGC 3 cut(s) 308, 674, 968
FokI GGATG 6 cut(s) 101, 434, 437, 502, 659, 1136
FriOI GRGCYC 1 cut(s) 414
Fsp4HI GCNGC 3 cut(s) 308, 674, 968
FspBI CTAG 1 cut(s) 65
GluI GCNGC 3 cut(s) 308, 674, 968
HaeIII GGCC 3 cut(s) 481, 693, 970
HapII CCGG 5 cut(s) 407, 644, 858, 925, 1109
Hin1II CATG 7 cut(s) 104, 155, 532, 586, 700, 886, 1206
HindIII AAGCTT 1 cut(s) 1175
HinfI GANTC 2 cut(s) 254, 281
HpaII CCGG 5 cut(s) 407, 644, 858, 925, 1109
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 6 cut(s) 214, 388, 540, 549, 1033, 1182
Hpy188III TCNNGA 2 cut(s) 596, 1080
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 264, 508, 907
HpyCH4III ACNGT 3 cut(s) 631, 771, 919
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 7 cut(s) 307, 432, 493, 748, 775, 842, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 1034
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 7 cut(s) 104, 155, 532, 586, 700, 886, 1206
Kzo9I GATC 5 cut(s) 28, 96, 549, 592, 1143
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 6 cut(s) 51, 79, 294, 480, 1037, 1114
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 5, 892
MalI GATC 5 cut(s) 30, 98, 551, 594, 1145
MboI GATC 5 cut(s) 28, 96, 549, 592, 1143
MflI RGATCY 1 cut(s) 1143
MhlI GDGCHC 2 cut(s) 20, 414
MluCI AATT 6 cut(s) 136, 183, 615, 844, 850, 876
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 8 cut(s) 157, 322, 337, 382, 436, 499, 630, 704
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 4 cut(s) 39, 59, 83, 786
MspA1I CMGCKG 1 cut(s) 676
MspI CCGG 5 cut(s) 407, 644, 858, 925, 1109
MspR9I CCNGG 4 cut(s) 407, 644, 660, 925
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 1 cut(s) 1034
NciI CCSGG 3 cut(s) 407, 644, 925
NcoI CCATGG 1 cut(s) 151
NdeII GATC 5 cut(s) 28, 96, 549, 592, 1143
NlaIII CATG 7 cut(s) 104, 155, 532, 586, 700, 886, 1206
NlaIV GGNNCC 2 cut(s) 641, 862
NmuCI GTSAC 1 cut(s) 5
NspV TTCGAA 1 cut(s) 268
OliI CACNNNNGTG 2 cut(s) 83, 786
PfeI GAWTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 977
PinAI ACCGGT 1 cut(s) 1108
PkrI GCNGC 3 cut(s) 309, 675, 969
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PsiI TTATAA 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspN4I GGNNCC 2 cut(s) 641, 862
PspPI GGNCC 2 cut(s) 273, 479
PsuI RGATCY 1 cut(s) 1143
RsaI GTAC 5 cut(s) 71, 339, 403, 569, 1002
RsaNI GTAC 5 cut(s) 70, 338, 402, 568, 1001
RseI CAYNNNNRTG 4 cut(s) 39, 59, 83, 786
SacI GAGCTC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 3 cut(s) 308, 674, 968
Sau3AI GATC 5 cut(s) 28, 96, 549, 592, 1143
Sau96I GGNCC 2 cut(s) 273, 479
ScaI AGTACT 2 cut(s) 339, 1002
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 4 cut(s) 407, 644, 660, 925
SduI GDGCHC 2 cut(s) 20, 414
SfaNI GCATC 6 cut(s) 51, 79, 294, 480, 1037, 1114
SfcI CTRYAG 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 268
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 4 cut(s) 39, 59, 83, 786
SmlI CTYRAG 2 cut(s) 341, 1040
SmoI CTYRAG 2 cut(s) 341, 1040
Sse9I AATT 6 cut(s) 136, 183, 615, 844, 850, 876
SsiI CCGC 4 cut(s) 156, 674, 739, 967
SspMI CTAG 1 cut(s) 65
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 405, 642, 658, 923
StyI CCWWGG 7 cut(s) 81, 151, 276, 417, 718, 976, 1006
TaaI ACNGT 3 cut(s) 631, 771, 919
TaiI ACGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 95, 268
TasI AATT 6 cut(s) 136, 183, 615, 844, 850, 876
TatI WGTACW 4 cut(s) 69, 337, 567, 1000
TauI GCSGC 2 cut(s) 676, 970
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 2 cut(s) 793, 907
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 6 cut(s) 23, 117, 129, 531, 571, 1140
TspRI CASTG 2 cut(s) 793, 907
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 1 cut(s) 273
XagI CCTNNNNNAGG 2 cut(s) 244, 268
XapI RAATTY 2 cut(s) 183, 844
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 2 cut(s) 339, 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.