Rorug01G0371500

Transmembrane protein 87A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003014
Physical Location & Seq
Forward (+)
48519983 .. 48523181
3199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0371500.1

Sequence Viewer

Length: 1353 bp
ATGGGTGGGGGAATTCGCACAAGCGTGAAGGGGTACCTCCTTTCGCAGCGGATCACTACGGCTTCAGACACAGTGCATGCAAACGAGAGCACCAATAGAAATTTCACTGCGCCCCAAGCTGCTGATTCAGAACAAGAGACGAGCACGGACTTGGATTCATCTAACTCATATTGGCTCAGTAGGTTTAGTGGTAGCATTCCTTGCTTGCCGATATTGGGCTCTGCTTCAAAGAGCAGGGTTTCAAATAGAACTAGAATCAGAGCTGAGAGTCTGCCTCACAAAGTGCCTTCAACTCCTCGGACAGAGGTTGAGATCTTGCTAAAGAGCTTCTTTTTTAATGAACTGAAAACCGCCACCAGCAACTTTCGGCCTGATAATGTGGTGGGTGAGGGTGGTTTTGGTCCCGTCTTTAAGGGGTGGATTGATCAGAATTCATTAGCAGCTGCCAAGCCTGGTGAAGGAATGGCTGTTGCTATAAAGAGGCTTAACCAAGAAAGTTATCAGGGTCGGGAGGAATGGTTTACAGAAATTTACTACCTTGGACAGCTGCGTCACCCAAATCTTGTGAAGTTGATAGGCTATTGTTCAGAGGATAACGAACTGCTTCTGGTGTATGACTTTGTGCCCCGTGGCAGTTTGGAGAATCATATATTTAGACGGAGTTCTCACTTTCAACCACTTTCGTGGACTGTTCGTATGAAGATTGCTCTTGGTGCTGCAAAGGCTCTAGCATTTCTTCACAATGAAGCAAAAGTTATACATCGTGACTTTAAAACATCTAATATCCTGTTGGATTCAACCTACAATGTTAAAATCTCTGATTTTGGTTTGGCTGTGGATGCACGAGCATTTGACAGACACCGAGGTGCTAAAACAAGGGTCATGGGCACATATGGATATGCAGCTCCTGAGTATTTAGCTACAGGTCGTTTGACCACCAAATGTGATGTGTATGGTTTTGGAGTTGTTATGCTTGAATTGCTTTCGGGAAAACGAGTTTTTGACCGGAACCGGCCACCTGGGGAACAGAACTTAGTTGAATGGGCCAAACCTTACCTCGTCAGCAAACACAGAGTCCTCCAAATTTTTGATCATCATATCAAAGGCCAGTTTTCTGTGACCAGAGCTCTTAAAGAAGTTGACCTTGCATTTCTTTGCCTATCAAGAGATCCCAAGCTTAGGCCAAACATGAATAATGTGGTAAAAACATTGGAGAAGCTTCAGGCATCCAGTGACATGGACGGCTTGGGGATCTCTCAAAATCAACGTCGCCAAAATCCAATGTCAGTTCAATCAATGGTCCCAAATAGTGCAGGAGAAGTATCAATGGAACCAGCAATTCAACACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

450

Amino Acids

50.32

Weight (kDa)

9.38

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 125 - 402 2e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 126 - 404 1.4e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 549
Acc65I GGTACC 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 33
AciI CCGC 2 cut(s) 49, 351
AclWI GGATC 3 cut(s) 59, 1163, 1259
AcoI YGGCCR 1 cut(s) 1013
AcsI RAATTY 5 cut(s) 12, 100, 430, 528, 1083
AcuI CTGAAG 2 cut(s) 48, 1205
AdeI CACNNNGTG 1 cut(s) 283
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 3 cut(s) 215, 458, 1179
AgsI TTSAA 9 cut(s) 228, 243, 291, 674, 798, 977, 1040, 1292, 1343
AjnI CCWGG 2 cut(s) 451, 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AleI CACNNNNGTG 3 cut(s) 23, 682, 864
Alw21I GWGCWC 3 cut(s) 92, 146, 1129
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 3 cut(s) 59, 1163, 1259
AlwNI CAGNNNCTG 1 cut(s) 908
AoxI GGCC 5 cut(s) 368, 1013, 1044, 1105, 1181
ApeKI GCWGC 7 cut(s) 46, 119, 440, 443, 547, 716, 902
ApoI RAATTY 5 cut(s) 12, 100, 430, 528, 1083
ArsI GACNNNNNNTTYG 4 cut(s) 1059, 1091, 1252, 1284
Asp700I GAANNNNTTC 1 cut(s) 603
Asp718I GGTACC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 3 cut(s) 401, 1044, 1300
AsuHPI GGTGA 3 cut(s) 398, 467, 545
AvaII GGWCC 2 cut(s) 401, 1300
BaeGI GKGCMC 2 cut(s) 627, 890
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 2 cut(s) 221, 1129
BauI CACGAG 1 cut(s) 843
Bbv12I GWGCWC 3 cut(s) 92, 146, 1129
BbvI GCAGC 7 cut(s) 58, 106, 430, 452, 534, 703, 914
BceAI ACGGC 2 cut(s) 75, 1258
BciT130I CCWGG 2 cut(s) 453, 1020
BclI TGATCA 2 cut(s) 424, 1090
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 252, 728
BfmI CTRYAG 1 cut(s) 921
BglII AGATCT 1 cut(s) 312
BisI GCNGC 7 cut(s) 47, 120, 441, 444, 548, 717, 903
BlsI GCNGC 7 cut(s) 48, 121, 442, 445, 549, 718, 904
Bme1390I CCNGG 2 cut(s) 453, 1020
Bme18I GGWCC 2 cut(s) 401, 1300
BmgT120I GGNCC 3 cut(s) 401, 1044, 1300
BmiI GGNNCC 5 cut(s) 35, 403, 1010, 1302, 1332
BmrFI CCNGG 2 cut(s) 453, 1020
BmsI GCATC 2 cut(s) 829, 1235
BplI GAGNNNNNCTC 2 cut(s) 259, 291
Bpu10I CCTNAGC 1 cut(s) 1178
BsaJI CCNNGG 5 cut(s) 296, 538, 628, 862, 1019
BsaWI WCCGGW 1 cut(s) 1005
BsaXI ACNNNNNCTCC 2 cut(s) 503, 533
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 458, 1179
Bse118I RCCGGY 1 cut(s) 1011
Bse1I ACTGG 2 cut(s) 1108, 1230
BseBI CCWGG 2 cut(s) 453, 1020
BseDI CCNNGG 5 cut(s) 296, 538, 628, 862, 1019
BseGI GGATG 2 cut(s) 844, 1226
BseLI CCNNNNNNNGG 3 cut(s) 215, 458, 1179
BseMII CTCAG 3 cut(s) 190, 255, 900
BseNI ACTGG 2 cut(s) 1108, 1230
BseRI GAGGAG 1 cut(s) 285
BseSI GKGCMC 2 cut(s) 627, 890
BseXI GCAGC 7 cut(s) 58, 106, 430, 452, 534, 703, 914
BsgI GTGCAG 1 cut(s) 1332
BshFI GGCC 5 cut(s) 370, 1015, 1046, 1107, 1183
BshNI GGYRCC 1 cut(s) 33
BsiHKAI GWGCWC 3 cut(s) 92, 146, 1129
BsiSI CCGG 2 cut(s) 1006, 1012
BslFI GGGAC 2 cut(s) 387, 1286
BslI CCNNNNNNNGG 3 cut(s) 215, 458, 1179
BsmAI GTCTC 1 cut(s) 131
BsmBI CGTCTC 1 cut(s) 131
BsmFI GGGAC 2 cut(s) 387, 1286
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 5 cut(s) 370, 1015, 1046, 1107, 1183
Bsp1286I GDGCHC 6 cut(s) 92, 146, 221, 627, 890, 1129
Bsp143I GATC 6 cut(s) 51, 312, 424, 1090, 1168, 1251
BspACI CCGC 2 cut(s) 49, 351
BspANI GGCC 5 cut(s) 370, 1015, 1046, 1107, 1183
BspCNI CTCAG 3 cut(s) 189, 256, 901
BspLI GGNNCC 5 cut(s) 35, 403, 1010, 1302, 1332
BspPI GGATC 3 cut(s) 59, 1163, 1259
BspT107I GGYRCC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 1011
BsrI ACTGG 2 cut(s) 1108, 1230
BssAI RCCGGY 1 cut(s) 1011
BssECI CCNNGG 5 cut(s) 296, 538, 628, 862, 1019
BssMI GATC 6 cut(s) 51, 312, 424, 1090, 1168, 1251
BssSI CACGAG 1 cut(s) 843
BssT1I CCWWGG 1 cut(s) 538
Bst2BI CACGAG 1 cut(s) 843
Bst2UI CCWGG 2 cut(s) 453, 1020
Bst4CI ACNGT 2 cut(s) 73, 691
BstAPI GCANNNNNTGC 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 78, 206
BstDEI CTNAG 5 cut(s) 176, 264, 909, 1033, 1178
BstDSI CCRYGG 1 cut(s) 628
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 844, 1226
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 6 cut(s) 54, 315, 427, 1093, 1171, 1254
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 6 cut(s) 51, 312, 424, 1090, 1168, 1251
BstMWI GCNNNNNNNGC 6 cut(s) 116, 201, 713, 722, 839, 979
BstNI CCWGG 2 cut(s) 453, 1020
BstNSI RCATGY 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 451, 1018
BstSFI CTRYAG 1 cut(s) 921
BstSLI GKGCMC 2 cut(s) 627, 890
BstV1I GCAGC 7 cut(s) 58, 106, 430, 452, 534, 703, 914
BstX2I RGATCY 3 cut(s) 312, 1168, 1251
BstXI CCANNNNNNTGG 2 cut(s) 684, 1237
BstYI RGATCY 3 cut(s) 312, 1168, 1251
BsuRI GGCC 5 cut(s) 370, 1015, 1046, 1107, 1183
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 2 cut(s) 844, 1226
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 3 cut(s) 78, 105, 1237
Cac8I GCNNGC 2 cut(s) 78, 206
CaiI CAGNNNCTG 1 cut(s) 908
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 1011
Cfr13I GGNCC 3 cut(s) 401, 1044, 1300
CseI GACGC 1 cut(s) 539
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 77, 883, 1189, 1237
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 5 cut(s) 176, 264, 909, 1033, 1178
DpnI GATC 6 cut(s) 53, 314, 426, 1092, 1170, 1253
DpnII GATC 6 cut(s) 51, 312, 424, 1090, 1168, 1251
DraI TTTAAA 1 cut(s) 772
DraIII CACNNNGTG 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 549
DseDI GACNNNNNNGTC 1 cut(s) 549
EaeI YGGCCR 1 cut(s) 1013
Ecl136II GAGCTC 1 cut(s) 1127
Eco130I CCWWGG 1 cut(s) 538
Eco24I GRGCYC 2 cut(s) 221, 1129
Eco47I GGWCC 2 cut(s) 401, 1300
Eco53kI GAGCTC 1 cut(s) 1127
Eco57I CTGAAG 2 cut(s) 48, 1205
EcoICRI GAGCTC 1 cut(s) 1127
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRI GAATTC 2 cut(s) 12, 430
EcoRII CCWGG 2 cut(s) 451, 1018
EcoT14I CCWWGG 1 cut(s) 538
EcoT38I GRGCYC 2 cut(s) 221, 1129
ErhI CCWWGG 1 cut(s) 538
Esp3I CGTCTC 1 cut(s) 131
FaeI CATG 4 cut(s) 80, 886, 1192, 1240
FalI AAGNNNNNCTT 4 cut(s) 314, 346, 1128, 1160
FaqI GGGAC 2 cut(s) 387, 1286
FatI CATG 4 cut(s) 76, 882, 1188, 1236
FauNDI CATATG 1 cut(s) 892
FbaI TGATCA 2 cut(s) 424, 1090
Fnu4HI GCNGC 7 cut(s) 47, 120, 441, 444, 548, 717, 903
FokI GGATG 2 cut(s) 851, 1213
FriOI GRGCYC 2 cut(s) 221, 1129
Fsp4HI GCNGC 7 cut(s) 47, 120, 441, 444, 548, 717, 903
FspBI CTAG 2 cut(s) 252, 728
GlaI GCGC 1 cut(s) 111
GluI GCNGC 7 cut(s) 47, 120, 441, 444, 548, 717, 903
HaeIII GGCC 5 cut(s) 370, 1015, 1046, 1107, 1183
HapII CCGG 2 cut(s) 1006, 1012
HgaI GACGC 1 cut(s) 539
HhaI GCGC 1 cut(s) 112
Hin1II CATG 4 cut(s) 80, 886, 1192, 1240
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 1141
HindII GTYRAC 1 cut(s) 1141
HindIII AAGCTT 2 cut(s) 1175, 1217
HinfI GANTC 7 cut(s) 125, 155, 255, 268, 643, 794, 1074
HpaII CCGG 2 cut(s) 1006, 1012
HphI GGTGA 3 cut(s) 398, 467, 545
Hpy166II GTNNAC 3 cut(s) 522, 687, 1141
Hpy188I TCNGA 7 cut(s) 67, 130, 260, 300, 429, 589, 820
Hpy188III TCNNGA 5 cut(s) 509, 764, 908, 987, 1164
Hpy8I GTNNAC 3 cut(s) 522, 687, 1141
Hpy99I CGWCG 1 cut(s) 1272
HpyAV CCTTC 3 cut(s) 22, 297, 452
HpyCH4III ACNGT 2 cut(s) 73, 691
HpyCH4IV ACGT 1 cut(s) 1267
HpyCH4V TGCA 7 cut(s) 76, 80, 719, 842, 902, 1148, 1313
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 201, 713, 722, 839, 979
HpyF3I CTNAG 5 cut(s) 176, 264, 909, 1033, 1178
HpySE526I ACGT 1 cut(s) 1267
Hsp92II CATG 4 cut(s) 80, 886, 1192, 1240
HspAI GCGC 1 cut(s) 110
KpnI GGTACC 1 cut(s) 37
Ksp22I TGATCA 2 cut(s) 424, 1090
Kzo9I GATC 6 cut(s) 51, 312, 424, 1090, 1168, 1251
LmnI GCTCC 1 cut(s) 910
Lsp1109I GCAGC 7 cut(s) 58, 106, 430, 452, 534, 703, 914
LweI GCATC 2 cut(s) 829, 1235
MaeI CTAG 2 cut(s) 252, 728
MaeII ACGT 1 cut(s) 1267
MaeIII GTNAC 4 cut(s) 551, 764, 1117, 1232
MalI GATC 6 cut(s) 53, 314, 426, 1092, 1170, 1253
MboI GATC 6 cut(s) 51, 312, 424, 1090, 1168, 1251
MboII GAAGA 2 cut(s) 712, 728
MflI RGATCY 3 cut(s) 312, 1168, 1251
MhlI GDGCHC 6 cut(s) 92, 146, 221, 627, 890, 1129
MluCI AATT 7 cut(s) 12, 100, 430, 528, 977, 1083, 1338
MlyI GAGTC 2 cut(s) 277, 1083
MmeI TCCRAC 1 cut(s) 771
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 6 cut(s) 336, 411, 486, 771, 810, 1131
MslI CAYNNNNRTG 3 cut(s) 23, 682, 864
MspA1I CMGCKG 3 cut(s) 49, 443, 547
MspI CCGG 2 cut(s) 1006, 1012
MspR9I CCNGG 2 cut(s) 453, 1020
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 2 cut(s) 453, 1020
MwoI GCNNNNNNNGC 6 cut(s) 116, 201, 713, 722, 839, 979
NdeI CATATG 1 cut(s) 892
NdeII GATC 6 cut(s) 51, 312, 424, 1090, 1168, 1251
NlaIII CATG 4 cut(s) 80, 886, 1192, 1240
NlaIV GGNNCC 5 cut(s) 35, 403, 1010, 1302, 1332
NmuCI GTSAC 4 cut(s) 551, 764, 1117, 1232
NspI RCATGY 1 cut(s) 80
OliI CACNNNNGTG 3 cut(s) 23, 682, 864
PaeI GCATGC 1 cut(s) 80
PctI GAATGC 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 5 cut(s) 125, 155, 255, 643, 794
PkrI GCNGC 7 cut(s) 48, 121, 442, 445, 549, 718, 904
PleI GAGTC 2 cut(s) 276, 1082
PpsI GAGTC 2 cut(s) 276, 1082
Psp124BI GAGCTC 1 cut(s) 1129
Psp6I CCWGG 2 cut(s) 451, 1018
PspGI CCWGG 2 cut(s) 451, 1018
PspN4I GGNNCC 5 cut(s) 35, 403, 1010, 1302, 1332
PspPI GGNCC 3 cut(s) 401, 1044, 1300
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 3 cut(s) 312, 1168, 1251
PvuII CAGCTG 2 cut(s) 443, 547
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 3 cut(s) 23, 682, 864
SacI GAGCTC 1 cut(s) 1129
SaqAI TTAA 6 cut(s) 336, 411, 486, 771, 810, 1131
SatI GCNGC 7 cut(s) 47, 120, 441, 444, 548, 717, 903
Sau3AI GATC 6 cut(s) 51, 312, 424, 1090, 1168, 1251
Sau96I GGNCC 3 cut(s) 401, 1044, 1300
SchI GAGTC 2 cut(s) 277, 1083
ScrFI CCNGG 2 cut(s) 453, 1020
SduI GDGCHC 6 cut(s) 92, 146, 221, 627, 890, 1129
SfaNI GCATC 2 cut(s) 829, 1235
SfcI CTRYAG 1 cut(s) 921
SinI GGWCC 2 cut(s) 401, 1300
SmiMI CAYNNNNRTG 3 cut(s) 23, 682, 864
SphI GCATGC 1 cut(s) 80
Sse9I AATT 7 cut(s) 12, 100, 430, 528, 977, 1083, 1338
SsiI CCGC 2 cut(s) 49, 351
SspMI CTAG 2 cut(s) 252, 728
SstI GAGCTC 1 cut(s) 1129
StyD4I CCNGG 2 cut(s) 451, 1018
StyI CCWWGG 1 cut(s) 538
TaaI ACNGT 2 cut(s) 73, 691
TaiI ACGT 1 cut(s) 1270
TasI AATT 7 cut(s) 12, 100, 430, 528, 977, 1083, 1338
TfiI GAWTC 5 cut(s) 125, 155, 255, 643, 794
Tru1I TTAA 6 cut(s) 336, 411, 486, 771, 810, 1131
Tru9I TTAA 6 cut(s) 336, 411, 486, 771, 810, 1131
TscAI CASTG 3 cut(s) 78, 112, 1237
TseFI GTSAC 4 cut(s) 551, 764, 1117, 1232
TseI GCWGC 7 cut(s) 46, 119, 440, 443, 547, 716, 902
Tsp45I GTSAC 4 cut(s) 551, 764, 1117, 1232
TspDTI ATGAA 6 cut(s) 147, 354, 423, 713, 759, 1205
TspGWI ACGGA 2 cut(s) 161, 673
TspRI CASTG 3 cut(s) 78, 112, 1237
VpaK11BI GGWCC 2 cut(s) 401, 1300
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 5 cut(s) 12, 100, 430, 528, 1083
XceI RCATGY 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 2 cut(s) 252, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.