Rw3G008530

Transmembrane protein 87B-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003014
Physical Location & Seq
Forward (+)
7923458 .. 7926484
3027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008530.1

Sequence Viewer

Length: 1305 bp
ATGGAACGAGGCGGATGGTTTTGGGGAGAAAAGGGGTCAGCTTTAGGGTTGTTCATAGTTGGGCTCATTTTGATCATCAACGGCTGTAATGCTTCCATCCACGAGTACAGAAACGAAGCTTTTACTCCTCAGTCAAACGCCTTCTTCTTCCATGGAGGCAGCGAAGGTCTCTACGCTTCTAAGGTCGTCGATTCCTCTTCTTCTTCAGATACTCACGTCAAGGGCAAGTCCTTCATCAGGTTTGAGAGTGTTACTTTTGTGAGGACAAAGGAGTCTGCGAATACGCAGAATGAAATGCAGCAGAGTACTGGTTTGGTGGAAGCTATAATTCTTGAGGTGAAGGACAGGGCTAGGATTGGGGCTTCCTTCCTGAAATCGGATCTGATATGCTGCACCAGGAATCTTTCCGAGGATGGACAATGCACGGCGGGGGAGGTTGTTATCCACAAAAATCCAGACAATCCCGAGTGGCCTAGGCGCATCCAAACAGTCTTTAATGGAAAGAACGAAGAGGCTAAGATGGAGTCTGAGATGGTTGAGATAAAAAGTTCTGGAATGTACTACCTGTATTTTATGTTTTGTAATCCGGAACTCAAGGGCACGCTGATTAAAGGAAGGACTGATTGGAGAAATCCATATGGTTATTTGCCGGGGAAGATGGCTCCTCTGATGACATTCTATGGCTTAATGTCTTTAGCTTACCTTGTGCTTGGCCTTGCCTGGTTTCTGAGGTTTGTTCAGTTTTGGAAGGATATCATACAATTGCACTACCACATCACAGCGGTGATTGCTCTTGGAATGTGTGAAATGGCTGTCTGGTACTTTGAGTACGTCAATTTCAATTCGACTGGAACCAGACCTATGGGCATTACACTCTGGGCGGTAACCTTTAGATCTGTCAAGAAGACACTCTCTCGTCTTCTTCTGTTAGTAGTTTCAATGGGCTTTGGTGTGGTGAAGCCTACACTTGGTGGTATAACCCCAAAAGTACTTCTGCTTGGCGTGGTATATTTTATGGCATCAGAAGCGCTCGAGCTTATTGAAAATTTGGGGAATATCAATGATTTTTCTGGAAAAGCAAGGTTATTTTTGGTCTTACCAGTTGCCTTCTTAGATTCGTGCTTTATTCTGTGGATTTTCTCTTCGTTATCAAAAACTTTGGAGAAACTTCAGATCAGGAGAAACATGGCTAAGTTGGAGCTATATCGAAAATTTACCAACTCTCTCGCAGTGTCTGTGCTTCTGTCAGTGGCCTGGATTGGCTTTGAGGTATTATTACTGGTCATAAAATCATATATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0008150 GO:0016192 GO:0016197 GO:0016482 GO:0042147 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lung_7-TM_R

Protein Analysis

434

Amino Acids

48.94

Weight (kDa)

8.9

Isoelectric Point (pI)

35.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GOST_TM PF06814 222 - 428 2.7e-75 GOST, seven transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 586
AciI CCGC 4 cut(s) 12, 428, 782, 881
AclWI GGATC 1 cut(s) 387
AcsI RAATTY 2 cut(s) 1045, 1211
AcuI CTGAAG 2 cut(s) 189, 1154
AdeI CACNNNGTG 1 cut(s) 971
AfaI GTAC 6 cut(s) 107, 307, 560, 821, 830, 990
AfeI AGCGCT 1 cut(s) 1029
AfiI CCNNNNNNNGG 3 cut(s) 237, 376, 968
AgsI TTSAA 3 cut(s) 841, 939, 1043
AjiI CACGTC 1 cut(s) 217
AjnI CCWGG 3 cut(s) 395, 719, 1253
AjuI GAANNNNNNNTTGG 2 cut(s) 607, 639
AleI CACNNNNGTG 1 cut(s) 782
AluBI AGCT 6 cut(s) 41, 119, 323, 698, 1036, 1201
AluI AGCT 6 cut(s) 41, 119, 323, 698, 1036, 1201
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 387
AlwNI CAGNNNCTG 1 cut(s) 1235
Ama87I CYCGRG 2 cut(s) 464, 1031
Aor13HI TCCGGA 1 cut(s) 586
Aor51HI AGCGCT 1 cut(s) 1029
AoxI GGCC 3 cut(s) 470, 712, 1251
ApeKI GCWGC 3 cut(s) 159, 298, 390
ApoI RAATTY 2 cut(s) 1045, 1211
AspA2I CCTAGG 1 cut(s) 473
AspLEI GCGC 2 cut(s) 480, 1030
AsuC2I CCSGG 1 cut(s) 651
AsuHPI GGTGA 3 cut(s) 349, 796, 967
AvaI CYCGRG 2 cut(s) 464, 1031
AvrII CCTAGG 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 602
BaeI ACNNNNGTAYC 2 cut(s) 201, 234
BanII GRGCYC 1 cut(s) 66
BauI CACGAG 1 cut(s) 101
BbsI GAAGAC 2 cut(s) 911, 911
BbvI GCAGC 3 cut(s) 171, 310, 377
BccI CCATC 6 cut(s) 9, 104, 407, 514, 526, 652
BceAI ACGGC 2 cut(s) 97, 441
BciT130I CCWGG 3 cut(s) 397, 721, 1255
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 1 cut(s) 651
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 2 cut(s) 351, 474
BfoI RGCGCY 1 cut(s) 1031
BglII AGATCT 1 cut(s) 893
BisI GCNGC 3 cut(s) 160, 299, 391
BlnI CCTAGG 1 cut(s) 473
BlsI GCNGC 3 cut(s) 161, 300, 392
BmcAI AGTACT 2 cut(s) 307, 990
Bme1390I CCNGG 4 cut(s) 397, 651, 721, 1255
BmeT110I CYCGRG 2 cut(s) 464, 1031
BmgBI CACGTC 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 663, 853
BmrFI CCNGG 4 cut(s) 397, 651, 721, 1255
BmsI GCATC 2 cut(s) 489, 1028
BpiI GAAGAC 2 cut(s) 911, 911
BpuEI CTTGAG 2 cut(s) 353, 578
BpuMI CCSGG 1 cut(s) 651
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 151, 408, 473, 650
BsaWI WCCGGW 1 cut(s) 586
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 376, 968
Bse1I ACTGG 4 cut(s) 313, 853, 1100, 1284
BseAI TCCGGA 1 cut(s) 586
BseBI CCWGG 3 cut(s) 397, 721, 1255
BseDI CCNNGG 4 cut(s) 151, 408, 473, 650
BseGI GGATG 4 cut(s) 20, 96, 418, 480
BseLI CCNNNNNNNGG 3 cut(s) 237, 376, 968
BseMII CTCAG 3 cut(s) 143, 519, 719
BseNI ACTGG 4 cut(s) 313, 853, 1100, 1284
BseRI GAGGAG 2 cut(s) 117, 654
BseSI GKGCMC 1 cut(s) 602
BseXI GCAGC 3 cut(s) 171, 310, 377
BsgI GTGCAG 1 cut(s) 376
BshFI GGCC 3 cut(s) 472, 714, 1253
BsiHKCI CYCGRG 2 cut(s) 464, 1031
BsiSI CCGG 2 cut(s) 587, 650
BslI CCNNNNNNNGG 3 cut(s) 237, 376, 968
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 3 cut(s) 472, 714, 1253
Bso31I GGTCTC 1 cut(s) 173
BsoBI CYCGRG 2 cut(s) 464, 1031
Bsp1286I GDGCHC 2 cut(s) 66, 602
Bsp13I TCCGGA 1 cut(s) 586
Bsp143I GATC 4 cut(s) 72, 379, 893, 1173
Bsp19I CCATGG 1 cut(s) 151
BspACI CCGC 4 cut(s) 12, 428, 782, 881
BspANI GGCC 3 cut(s) 472, 714, 1253
BspCNI CTCAG 3 cut(s) 142, 520, 720
BspEI TCCGGA 1 cut(s) 586
BspLI GGNNCC 2 cut(s) 663, 853
BspPI GGATC 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 173
BsrI ACTGG 4 cut(s) 313, 853, 1100, 1284
BssECI CCNNGG 4 cut(s) 151, 408, 473, 650
BssMI GATC 4 cut(s) 72, 379, 893, 1173
BssSI CACGAG 1 cut(s) 101
BssT1I CCWWGG 2 cut(s) 151, 473
Bst2BI CACGAG 1 cut(s) 101
Bst2UI CCWGG 3 cut(s) 397, 721, 1255
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 3 cut(s) 202, 504, 1147
BstC8I GCNNGC 1 cut(s) 602
BstDEI CTNAG 7 cut(s) 129, 180, 516, 528, 728, 1111, 1191
BstDSI CCRYGG 1 cut(s) 151
BstEII GGTNACC 1 cut(s) 883
BstENI CCTNNNNNAGG 1 cut(s) 235
BstF5I GGATG 4 cut(s) 20, 96, 418, 480
BstH2I RGCGCY 1 cut(s) 1031
BstHHI GCGC 2 cut(s) 480, 1030
BstKTI GATC 4 cut(s) 75, 382, 896, 1176
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 4 cut(s) 72, 379, 893, 1173
BstMWI GCNNNNNNNGC 2 cut(s) 788, 1025
BstNI CCWGG 3 cut(s) 397, 721, 1255
BstPI GGTNACC 1 cut(s) 883
BstSCI CCNGG 4 cut(s) 395, 649, 719, 1253
BstSLI GKGCMC 1 cut(s) 602
BstV1I GCAGC 3 cut(s) 171, 310, 377
BstV2I GAAGAC 2 cut(s) 911, 911
BstX2I RGATCY 2 cut(s) 379, 893
BstXI CCANNNNNNTGG 1 cut(s) 862
BstYI RGATCY 2 cut(s) 379, 893
BsuRI GGCC 3 cut(s) 472, 714, 1253
BtgI CCRYGG 1 cut(s) 151
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 4 cut(s) 20, 96, 418, 480
BtsI GCAGTG 1 cut(s) 1236
BtsIMutI CAGTG 2 cut(s) 1236, 1254
Cac8I GCNNGC 1 cut(s) 602
CaiI CAGNNNCTG 1 cut(s) 1235
CfoI GCGC 2 cut(s) 480, 1030
Csp6I GTAC 6 cut(s) 106, 306, 559, 820, 829, 989
CviAII CATG 2 cut(s) 152, 1186
CviQI GTAC 6 cut(s) 106, 306, 559, 820, 829, 989
DdeI CTNAG 7 cut(s) 129, 180, 516, 528, 728, 1111, 1191
DpnI GATC 4 cut(s) 74, 381, 895, 1175
DpnII GATC 4 cut(s) 72, 379, 893, 1173
DraIII CACNNNGTG 1 cut(s) 971
DrdI GACNNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 202, 504, 1147
EarI CTCTTC 3 cut(s) 202, 504, 1147
EciI GGCGGA 1 cut(s) 27
Eco130I CCWWGG 2 cut(s) 151, 473
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 754
Eco47III AGCGCT 1 cut(s) 1029
Eco57I CTGAAG 2 cut(s) 189, 1154
Eco88I CYCGRG 2 cut(s) 464, 1031
Eco91I GGTNACC 1 cut(s) 883
EcoNI CCTNNNNNAGG 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 883
EcoRII CCWGG 3 cut(s) 395, 719, 1253
EcoRV GATATC 1 cut(s) 754
EcoT14I CCWWGG 2 cut(s) 151, 473
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 2 cut(s) 151, 473
FaeI CATG 2 cut(s) 155, 1189
FatI CATG 2 cut(s) 151, 1185
FauI CCCGC 1 cut(s) 421
FauNDI CATATG 1 cut(s) 637
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 160, 299, 391
FokI GGATG 4 cut(s) 27, 83, 425, 467
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 160, 299, 391
FspBI CTAG 2 cut(s) 351, 474
GlaI GCGC 2 cut(s) 479, 1029
GluI GCNGC 3 cut(s) 160, 299, 391
HaeII RGCGCY 1 cut(s) 1031
HaeIII GGCC 3 cut(s) 472, 714, 1253
HapII CCGG 2 cut(s) 587, 650
HhaI GCGC 2 cut(s) 480, 1030
Hin1II CATG 2 cut(s) 155, 1189
Hin6I GCGC 2 cut(s) 478, 1028
HinP1I GCGC 2 cut(s) 478, 1028
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 5 cut(s) 191, 272, 400, 524, 1115
HpaII CCGG 2 cut(s) 587, 650
HphI GGTGA 3 cut(s) 349, 796, 967
Hpy188I TCNGA 9 cut(s) 208, 379, 384, 409, 529, 669, 729, 1024, 1173
Hpy188III TCNNGA 9 cut(s) 332, 370, 455, 464, 552, 587, 901, 1071, 1177
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 8 cut(s) 151, 158, 241, 334, 376, 609, 742, 1117
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 2 cut(s) 216, 831
HpyCH4V TGCA 4 cut(s) 298, 393, 423, 766
HpyF10VI GCNNNNNNNGC 2 cut(s) 788, 1025
HpyF3I CTNAG 7 cut(s) 129, 180, 516, 528, 728, 1111, 1191
HpySE526I ACGT 2 cut(s) 216, 831
Hsp92II CATG 2 cut(s) 155, 1189
HspAI GCGC 2 cut(s) 478, 1028
Kpn2I TCCGGA 1 cut(s) 586
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 4 cut(s) 72, 379, 893, 1173
LmnI GCTCC 2 cut(s) 667, 1198
Lsp1109I GCAGC 3 cut(s) 171, 310, 377
LweI GCATC 2 cut(s) 489, 1028
MaeI CTAG 2 cut(s) 351, 474
MaeII ACGT 2 cut(s) 216, 831
MaeIII GTNAC 2 cut(s) 250, 883
MalI GATC 4 cut(s) 74, 381, 895, 1175
MboI GATC 4 cut(s) 72, 379, 893, 1173
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 2 cut(s) 379, 893
MhlI GDGCHC 2 cut(s) 66, 602
MluCI AATT 6 cut(s) 327, 761, 835, 841, 1045, 1211
MlyI GAGTC 2 cut(s) 281, 533
MmeI TCCRAC 1 cut(s) 1176
MroI TCCGGA 1 cut(s) 586
MseI TTAA 3 cut(s) 495, 609, 686
MslI CAYNNNNRTG 1 cut(s) 782
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 2 cut(s) 587, 650
MspR9I CCNGG 4 cut(s) 397, 651, 721, 1255
MunI CAATTG 1 cut(s) 761
MvaI CCWGG 3 cut(s) 397, 721, 1255
MwoI GCNNNNNNNGC 2 cut(s) 788, 1025
NciI CCSGG 1 cut(s) 651
NcoI CCATGG 1 cut(s) 151
NdeI CATATG 1 cut(s) 637
NdeII GATC 4 cut(s) 72, 379, 893, 1173
NlaIII CATG 2 cut(s) 155, 1189
NlaIV GGNNCC 2 cut(s) 663, 853
OliI CACNNNNGTG 1 cut(s) 782
PaeR7I CTCGAG 1 cut(s) 1031
PfeI GAWTC 3 cut(s) 191, 400, 1115
PkrI GCNGC 3 cut(s) 161, 300, 392
PleI GAGTC 2 cut(s) 280, 532
PpsI GAGTC 2 cut(s) 280, 532
Psp6I CCWGG 3 cut(s) 395, 719, 1253
PspEI GGTNACC 1 cut(s) 883
PspGI CCWGG 3 cut(s) 395, 719, 1253
PspN4I GGNNCC 2 cut(s) 663, 853
PspXI VCTCGAGB 1 cut(s) 1031
PstNI CAGNNNCTG 1 cut(s) 1235
PsuI RGATCY 2 cut(s) 379, 893
RsaI GTAC 6 cut(s) 107, 307, 560, 821, 830, 990
RsaNI GTAC 6 cut(s) 106, 306, 559, 820, 829, 989
RseI CAYNNNNRTG 1 cut(s) 782
SaqAI TTAA 3 cut(s) 495, 609, 686
SatI GCNGC 3 cut(s) 160, 299, 391
Sau3AI GATC 4 cut(s) 72, 379, 893, 1173
ScaI AGTACT 2 cut(s) 307, 990
SchI GAGTC 2 cut(s) 281, 533
ScrFI CCNGG 4 cut(s) 397, 651, 721, 1255
SduI GDGCHC 2 cut(s) 66, 602
SfaNI GCATC 2 cut(s) 489, 1028
Sfr274I CTCGAG 1 cut(s) 1031
SlaI CTCGAG 1 cut(s) 1031
SmiMI CAYNNNNRTG 1 cut(s) 782
SmlI CTYRAG 3 cut(s) 332, 593, 1031
SmoI CTYRAG 3 cut(s) 332, 593, 1031
Sse9I AATT 6 cut(s) 327, 761, 835, 841, 1045, 1211
SsiI CCGC 4 cut(s) 12, 428, 782, 881
SspMI CTAG 2 cut(s) 351, 474
StyD4I CCNGG 4 cut(s) 395, 649, 719, 1253
StyI CCWWGG 2 cut(s) 151, 473
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 2 cut(s) 219, 834
TaqI TCGA 4 cut(s) 189, 845, 1032, 1207
TasI AATT 6 cut(s) 327, 761, 835, 841, 1045, 1211
TatI WGTACW 4 cut(s) 105, 305, 558, 988
TfiI GAWTC 3 cut(s) 191, 400, 1115
Tru1I TTAA 3 cut(s) 495, 609, 686
Tru9I TTAA 3 cut(s) 495, 609, 686
TscAI CASTG 2 cut(s) 1236, 1254
TseI GCWGC 3 cut(s) 159, 298, 390
TspDTI ATGAA 3 cut(s) 43, 223, 306
TspRI CASTG 2 cut(s) 1236, 1254
XagI CCTNNNNNAGG 1 cut(s) 235
XapI RAATTY 2 cut(s) 1045, 1211
XhoI CTCGAG 1 cut(s) 1031
XmaJI CCTAGG 1 cut(s) 473
XspI CTAG 2 cut(s) 351, 474
ZrmI AGTACT 2 cut(s) 307, 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.